Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 366 |
| Acc36I | ACCTGC | 1 cut(s) | 366 |
| AccI | GTMKAC | 3 cut(s) | 483, 866, 988 |
| AclWI | GGATC | 4 cut(s) | 14, 272, 402, 975 |
| AcuI | CTGAAG | 1 cut(s) | 56 |
| AfaI | GTAC | 2 cut(s) | 591, 645 |
| AflIII | ACRYGT | 1 cut(s) | 592 |
| AgsI | TTSAA | 5 cut(s) | 305, 310, 346, 850, 908 |
| AjnI | CCWGG | 2 cut(s) | 24, 795 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 162, 194 |
| AluBI | AGCT | 5 cut(s) | 198, 337, 750, 772, 840 |
| AluI | AGCT | 5 cut(s) | 198, 337, 750, 772, 840 |
| Alw21I | GWGCWC | 3 cut(s) | 357, 752, 921 |
| AlwI | GGATC | 4 cut(s) | 14, 272, 402, 975 |
| Ama87I | CYCGRG | 1 cut(s) | 313 |
| AoxI | GGCC | 2 cut(s) | 526, 946 |
| ApeKI | GCWGC | 1 cut(s) | 139 |
| AspLEI | GCGC | 1 cut(s) | 151 |
| AsuC2I | CCSGG | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 2 cut(s) | 271, 776 |
| AvaI | CYCGRG | 1 cut(s) | 313 |
| BanII | GRGCYC | 2 cut(s) | 565, 752 |
| BbsI | GAAGAC | 3 cut(s) | 293, 470, 618 |
| Bbv12I | GWGCWC | 3 cut(s) | 357, 752, 921 |
| BbvI | GCAGC | 1 cut(s) | 126 |
| BccI | CCATC | 3 cut(s) | 70, 224, 905 |
| BciT130I | CCWGG | 2 cut(s) | 26, 797 |
| BcnI | CCSGG | 1 cut(s) | 92 |
| BfaI | CTAG | 2 cut(s) | 225, 873 |
| BfmI | CTRYAG | 2 cut(s) | 835, 985 |
| BfuAI | ACCTGC | 1 cut(s) | 366 |
| BisI | GCNGC | 1 cut(s) | 140 |
| BlsI | GCNGC | 1 cut(s) | 141 |
| Bme1390I | CCNGG | 3 cut(s) | 26, 92, 797 |
| BmeT110I | CYCGRG | 1 cut(s) | 313 |
| BmrFI | CCNGG | 3 cut(s) | 26, 92, 797 |
| BpiI | GAAGAC | 3 cut(s) | 293, 470, 618 |
| BpuMI | CCSGG | 1 cut(s) | 92 |
| BsaAI | YACGTR | 2 cut(s) | 411, 593 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 652, 949 |
| Bse3DI | GCAATG | 1 cut(s) | 421 |
| BseBI | CCWGG | 2 cut(s) | 26, 797 |
| BseDI | CCNNGG | 3 cut(s) | 34, 652, 949 |
| BseGI | GGATG | 1 cut(s) | 637 |
| BseMI | GCAATG | 1 cut(s) | 421 |
| BseMII | CTCAG | 2 cut(s) | 432, 558 |
| BseRI | GAGGAG | 1 cut(s) | 782 |
| BseXI | GCAGC | 1 cut(s) | 126 |
| BshFI | GGCC | 2 cut(s) | 528, 948 |
| BsiHKAI | GWGCWC | 3 cut(s) | 357, 752, 921 |
| BsiHKCI | CYCGRG | 1 cut(s) | 313 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BslFI | GGGAC | 1 cut(s) | 910 |
| BsmFI | GGGAC | 1 cut(s) | 910 |
| BsnI | GGCC | 2 cut(s) | 528, 948 |
| BsoBI | CYCGRG | 1 cut(s) | 313 |
| Bsp1286I | GDGCHC | 4 cut(s) | 357, 565, 752, 921 |
| Bsp143I | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| Bsp19I | CCATGG | 1 cut(s) | 34 |
| BspANI | GGCC | 2 cut(s) | 528, 948 |
| BspCNI | CTCAG | 2 cut(s) | 433, 559 |
| BspMI | ACCTGC | 1 cut(s) | 366 |
| BspPI | GGATC | 4 cut(s) | 14, 272, 402, 975 |
| BsrDI | GCAATG | 1 cut(s) | 421 |
| BssECI | CCNNGG | 3 cut(s) | 34, 652, 949 |
| BssMI | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| BssT1I | CCWWGG | 2 cut(s) | 34, 652 |
| Bst2UI | CCWGG | 2 cut(s) | 26, 797 |
| Bst4CI | ACNGT | 4 cut(s) | 220, 327, 455, 577 |
| BstBAI | YACGTR | 2 cut(s) | 411, 593 |
| BstC8I | GCNNGC | 2 cut(s) | 296, 335 |
| BstDEI | CTNAG | 4 cut(s) | 284, 441, 567, 923 |
| BstDSI | CCRYGG | 1 cut(s) | 34 |
| BstF5I | GGATG | 1 cut(s) | 637 |
| BstHHI | GCGC | 1 cut(s) | 151 |
| BstKTI | GATC | 7 cut(s) | 9, 280, 397, 521, 573, 976, 983 |
| BstMBI | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 148, 195 |
| BstNI | CCWGG | 2 cut(s) | 26, 797 |
| BstNSI | RCATGY | 1 cut(s) | 298 |
| BstSCI | CCNGG | 3 cut(s) | 24, 90, 795 |
| BstSFI | CTRYAG | 2 cut(s) | 835, 985 |
| BstV1I | GCAGC | 1 cut(s) | 126 |
| BstV2I | GAAGAC | 3 cut(s) | 293, 470, 618 |
| BstX2I | RGATCY | 1 cut(s) | 980 |
| BstYI | RGATCY | 1 cut(s) | 980 |
| BsuRI | GGCC | 2 cut(s) | 528, 948 |
| BtgI | CCRYGG | 1 cut(s) | 34 |
| BtsCI | GGATG | 1 cut(s) | 637 |
| BtsIMutI | CAGTG | 1 cut(s) | 573 |
| BveI | ACCTGC | 1 cut(s) | 366 |
| Cac8I | GCNNGC | 2 cut(s) | 296, 335 |
| CfoI | GCGC | 1 cut(s) | 151 |
| CseI | GACGC | 3 cut(s) | 287, 475, 674 |
| Csp6I | GTAC | 2 cut(s) | 590, 644 |
| CviAII | CATG | 6 cut(s) | 35, 166, 295, 398, 512, 710 |
| CviQI | GTAC | 2 cut(s) | 590, 644 |
| DdeI | CTNAG | 4 cut(s) | 284, 441, 567, 923 |
| DpnI | GATC | 7 cut(s) | 8, 279, 396, 520, 572, 975, 982 |
| DpnII | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| Ecl136II | GAGCTC | 1 cut(s) | 750 |
| Eco130I | CCWWGG | 2 cut(s) | 34, 652 |
| Eco24I | GRGCYC | 2 cut(s) | 565, 752 |
| Eco32I | GATATC | 1 cut(s) | 969 |
| Eco53kI | GAGCTC | 1 cut(s) | 750 |
| Eco57I | CTGAAG | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 313 |
| EcoICRI | GAGCTC | 1 cut(s) | 750 |
| EcoRII | CCWGG | 2 cut(s) | 24, 795 |
| EcoRV | GATATC | 1 cut(s) | 969 |
| EcoT14I | CCWWGG | 2 cut(s) | 34, 652 |
| EcoT38I | GRGCYC | 2 cut(s) | 565, 752 |
| ErhI | CCWWGG | 2 cut(s) | 34, 652 |
| FaeI | CATG | 6 cut(s) | 38, 169, 298, 401, 515, 713 |
| FaqI | GGGAC | 1 cut(s) | 910 |
| FatI | CATG | 6 cut(s) | 34, 165, 294, 397, 511, 709 |
| FblI | GTMKAC | 3 cut(s) | 483, 866, 988 |
| Fnu4HI | GCNGC | 1 cut(s) | 140 |
| FokI | GGATG | 1 cut(s) | 644 |
| FriOI | GRGCYC | 2 cut(s) | 565, 752 |
| Fsp4HI | GCNGC | 1 cut(s) | 140 |
| FspBI | CTAG | 2 cut(s) | 225, 873 |
| GlaI | GCGC | 1 cut(s) | 150 |
| GluI | GCNGC | 1 cut(s) | 140 |
| HaeIII | GGCC | 2 cut(s) | 528, 948 |
| HapII | CCGG | 1 cut(s) | 91 |
| HgaI | GACGC | 3 cut(s) | 287, 475, 674 |
| HhaI | GCGC | 1 cut(s) | 151 |
| Hin1II | CATG | 6 cut(s) | 38, 169, 298, 401, 515, 713 |
| Hin6I | GCGC | 1 cut(s) | 149 |
| HinP1I | GCGC | 1 cut(s) | 149 |
| HincII | GTYRAC | 2 cut(s) | 100, 207 |
| HindII | GTYRAC | 2 cut(s) | 100, 207 |
| HinfI | GANTC | 4 cut(s) | 11, 212, 665, 706 |
| HpaII | CCGG | 1 cut(s) | 91 |
| HphI | GGTGA | 2 cut(s) | 271, 776 |
| Hpy166II | GTNNAC | 6 cut(s) | 100, 207, 383, 484, 867, 989 |
| Hpy188I | TCNGA | 7 cut(s) | 16, 75, 277, 680, 690, 787, 973 |
| Hpy188III | TCNNGA | 3 cut(s) | 225, 829, 908 |
| Hpy8I | GTNNAC | 6 cut(s) | 100, 207, 383, 484, 867, 989 |
| HpyAV | CCTTC | 4 cut(s) | 426, 538, 874, 940 |
| HpyCH4III | ACNGT | 4 cut(s) | 220, 327, 455, 577 |
| HpyCH4IV | ACGT | 2 cut(s) | 410, 592 |
| HpyCH4V | TGCA | 2 cut(s) | 414, 419 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 148, 195 |
| HpyF3I | CTNAG | 4 cut(s) | 284, 441, 567, 923 |
| HpySE526I | ACGT | 2 cut(s) | 410, 592 |
| Hsp92II | CATG | 6 cut(s) | 38, 169, 298, 401, 515, 713 |
| HspAI | GCGC | 1 cut(s) | 149 |
| Kzo9I | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| LmnI | GCTCC | 3 cut(s) | 195, 769, 916 |
| LpnPI | CCDG | 9 cut(s) | 11, 38, 104, 159, 371, 579, 682, 782, 809 |
| Lsp1109I | GCAGC | 1 cut(s) | 126 |
| MaeI | CTAG | 2 cut(s) | 225, 873 |
| MaeII | ACGT | 2 cut(s) | 410, 592 |
| MaeIII | GTNAC | 2 cut(s) | 507, 721 |
| MalI | GATC | 7 cut(s) | 8, 279, 396, 520, 572, 975, 982 |
| MboI | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| MboII | GAAGA | 8 cut(s) | 62, 187, 293, 475, 623, 952, 976, 990 |
| MfeI | CAATTG | 2 cut(s) | 305, 489 |
| MflI | RGATCY | 1 cut(s) | 980 |
| MhlI | GDGCHC | 4 cut(s) | 357, 565, 752, 921 |
| MluCI | AATT | 4 cut(s) | 48, 305, 489, 805 |
| MlyI | GAGTC | 1 cut(s) | 5 |
| MmeI | TCCRAC | 1 cut(s) | 609 |
| MseI | TTAA | 2 cut(s) | 329, 816 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| MspI | CCGG | 1 cut(s) | 91 |
| MspR9I | CCNGG | 3 cut(s) | 26, 92, 797 |
| MunI | CAATTG | 2 cut(s) | 305, 489 |
| MvaI | CCWGG | 2 cut(s) | 26, 797 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 148, 195 |
| NciI | CCSGG | 1 cut(s) | 92 |
| NcoI | CCATGG | 1 cut(s) | 34 |
| NdeII | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| NlaIII | CATG | 6 cut(s) | 38, 169, 298, 401, 515, 713 |
| NmeAIII | GCCGAG | 1 cut(s) | 974 |
| NmuCI | GTSAC | 1 cut(s) | 721 |
| NspI | RCATGY | 1 cut(s) | 298 |
| PaeI | GCATGC | 1 cut(s) | 298 |
| PaqCI | CACCTGC | 1 cut(s) | 366 |
| PfeI | GAWTC | 3 cut(s) | 212, 665, 706 |
| PflFI | GACNNNGTC | 1 cut(s) | 469 |
| PkrI | GCNGC | 1 cut(s) | 141 |
| PleI | GAGTC | 1 cut(s) | 5 |
| PpsI | GAGTC | 1 cut(s) | 5 |
| Ppu21I | YACGTR | 2 cut(s) | 411, 593 |
| Psp124BI | GAGCTC | 1 cut(s) | 752 |
| Psp6I | CCWGG | 2 cut(s) | 24, 795 |
| PspGI | CCWGG | 2 cut(s) | 24, 795 |
| PsuI | RGATCY | 1 cut(s) | 980 |
| PsyI | GACNNNGTC | 1 cut(s) | 469 |
| RsaI | GTAC | 2 cut(s) | 591, 645 |
| RsaNI | GTAC | 2 cut(s) | 590, 644 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SacI | GAGCTC | 1 cut(s) | 752 |
| SaqAI | TTAA | 2 cut(s) | 329, 816 |
| SatI | GCNGC | 1 cut(s) | 140 |
| Sau3AI | GATC | 7 cut(s) | 6, 277, 394, 518, 570, 973, 980 |
| SchI | GAGTC | 1 cut(s) | 5 |
| ScrFI | CCNGG | 3 cut(s) | 26, 92, 797 |
| SduI | GDGCHC | 4 cut(s) | 357, 565, 752, 921 |
| SfcI | CTRYAG | 2 cut(s) | 835, 985 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| SphI | GCATGC | 1 cut(s) | 298 |
| Sse9I | AATT | 4 cut(s) | 48, 305, 489, 805 |
| SspI | AATATT | 1 cut(s) | 904 |
| SspMI | CTAG | 2 cut(s) | 225, 873 |
| SstI | GAGCTC | 1 cut(s) | 752 |
| StyD4I | CCNGG | 3 cut(s) | 24, 90, 795 |
| StyI | CCWWGG | 2 cut(s) | 34, 652 |
| TaaI | ACNGT | 4 cut(s) | 220, 327, 455, 577 |
| TaiI | ACGT | 2 cut(s) | 413, 595 |
| TaqI | TCGA | 3 cut(s) | 9, 830, 976 |
| TasI | AATT | 4 cut(s) | 48, 305, 489, 805 |
| TfiI | GAWTC | 3 cut(s) | 212, 665, 706 |
| Tru1I | TTAA | 2 cut(s) | 329, 816 |
| Tru9I | TTAA | 2 cut(s) | 329, 816 |
| TscAI | CASTG | 1 cut(s) | 580 |
| TseFI | GTSAC | 1 cut(s) | 721 |
| TseI | GCWGC | 1 cut(s) | 139 |
| Tsp45I | GTSAC | 1 cut(s) | 721 |
| TspDTI | ATGAA | 1 cut(s) | 648 |
| TspGWI | ACGGA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 580 |
| Tth111I | GACNNNGTC | 1 cut(s) | 469 |
| XbaI | TCTAGA | 1 cut(s) | 224 |
| XceI | RCATGY | 1 cut(s) | 298 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 32 |
| XmiI | GTMKAC | 3 cut(s) | 483, 866, 988 |
| XspI | CTAG | 2 cut(s) | 225, 873 |