Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 35 - 108 | 5.5e-09 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1048 |
| Acc36I | ACCTGC | 3 cut(s) | 409, 514, 970 |
| AccB1I | GGYRCC | 1 cut(s) | 796 |
| AccI | GTMKAC | 1 cut(s) | 232 |
| AccIII | TCCGGA | 1 cut(s) | 771 |
| AciI | CCGC | 3 cut(s) | 425, 758, 992 |
| AclWI | GGATC | 8 cut(s) | 27, 61, 96, 185, 335, 348, 373, 386 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 3 cut(s) | 72, 587, 1045 |
| AcuI | CTGAAG | 1 cut(s) | 44 |
| AcvI | CACGTG | 1 cut(s) | 971 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 174, 329, 467, 751 |
| AgsI | TTSAA | 4 cut(s) | 152, 531, 896, 955 |
| AjiI | CACGTC | 1 cut(s) | 793 |
| AjnI | CCWGG | 1 cut(s) | 1052 |
| AleI | CACNNNNGTG | 1 cut(s) | 791 |
| AluBI | AGCT | 4 cut(s) | 155, 654, 769, 931 |
| AluI | AGCT | 4 cut(s) | 155, 654, 769, 931 |
| Alw21I | GWGCWC | 1 cut(s) | 656 |
| Alw26I | GTCTC | 2 cut(s) | 2, 915 |
| AlwI | GGATC | 8 cut(s) | 27, 61, 96, 185, 335, 348, 373, 386 |
| Ama87I | CYCGRG | 1 cut(s) | 655 |
| Aor13HI | TCCGGA | 1 cut(s) | 771 |
| AoxI | GGCC | 2 cut(s) | 36, 1055 |
| ApoI | RAATTY | 3 cut(s) | 72, 587, 1045 |
| AspLEI | GCGC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 2 cut(s) | 780, 1056 |
| AsuC2I | CCSGG | 2 cut(s) | 383, 861 |
| AsuHPI | GGTGA | 1 cut(s) | 716 |
| AvaI | CYCGRG | 1 cut(s) | 655 |
| AvaII | GGWCC | 1 cut(s) | 780 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 2 cut(s) | 340, 378 |
| BanI | GGYRCC | 1 cut(s) | 796 |
| BanII | GRGCYC | 2 cut(s) | 187, 656 |
| BbrPI | CACGTG | 1 cut(s) | 971 |
| BbsI | GAAGAC | 1 cut(s) | 60 |
| Bbv12I | GWGCWC | 1 cut(s) | 656 |
| BccI | CCATC | 5 cut(s) | 323, 540, 712, 722, 791 |
| BceAI | ACGGC | 1 cut(s) | 864 |
| BciT130I | CCWGG | 1 cut(s) | 1054 |
| BcnI | CCSGG | 2 cut(s) | 383, 861 |
| BcoDI | GTCTC | 2 cut(s) | 2, 915 |
| BfaI | CTAG | 2 cut(s) | 819, 1031 |
| BfmI | CTRYAG | 1 cut(s) | 462 |
| BfuAI | ACCTGC | 3 cut(s) | 409, 514, 970 |
| Bme1390I | CCNGG | 3 cut(s) | 383, 861, 1054 |
| Bme18I | GGWCC | 1 cut(s) | 780 |
| BmeT110I | CYCGRG | 1 cut(s) | 655 |
| BmgBI | CACGTC | 1 cut(s) | 793 |
| BmgT120I | GGNCC | 2 cut(s) | 780, 1056 |
| BmiI | GGNNCC | 4 cut(s) | 342, 380, 756, 798 |
| BmrFI | CCNGG | 3 cut(s) | 383, 861, 1054 |
| BmrI | ACTGGG | 1 cut(s) | 1035 |
| BmsI | GCATC | 3 cut(s) | 402, 616, 955 |
| BmuI | ACTGGG | 1 cut(s) | 1035 |
| BpiI | GAAGAC | 1 cut(s) | 60 |
| BpuMI | CCSGG | 2 cut(s) | 383, 861 |
| BsaAI | YACGTR | 2 cut(s) | 161, 971 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 2 cut(s) | 212, 287 |
| BsaWI | WCCGGW | 1 cut(s) | 771 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 174, 329, 467, 751 |
| Bse1I | ACTGG | 1 cut(s) | 1030 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseAI | TCCGGA | 1 cut(s) | 771 |
| BseBI | CCWGG | 1 cut(s) | 1054 |
| BseDI | CCNNGG | 2 cut(s) | 212, 287 |
| BseGI | GGATG | 2 cut(s) | 52, 665 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 174, 329, 467, 751 |
| BseMII | CTCAG | 3 cut(s) | 380, 815, 902 |
| BseNI | ACTGG | 1 cut(s) | 1030 |
| BseRI | GAGGAG | 3 cut(s) | 20, 209, 483 |
| BseYI | CCCAGC | 1 cut(s) | 931 |
| BshFI | GGCC | 2 cut(s) | 38, 1057 |
| BshNI | GGYRCC | 1 cut(s) | 796 |
| BsiHKAI | GWGCWC | 1 cut(s) | 656 |
| BsiHKCI | CYCGRG | 1 cut(s) | 655 |
| BsiSI | CCGG | 3 cut(s) | 382, 772, 860 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 174, 329, 467, 751 |
| BsmAI | GTCTC | 2 cut(s) | 2, 915 |
| BsmBI | CGTCTC | 1 cut(s) | 2 |
| BsnI | GGCC | 2 cut(s) | 38, 1057 |
| BsoBI | CYCGRG | 1 cut(s) | 655 |
| Bsp1286I | GDGCHC | 2 cut(s) | 187, 656 |
| Bsp13I | TCCGGA | 1 cut(s) | 771 |
| Bsp19I | CCATGG | 2 cut(s) | 212, 287 |
| BspACI | CCGC | 3 cut(s) | 425, 758, 992 |
| BspANI | GGCC | 2 cut(s) | 38, 1057 |
| BspCNI | CTCAG | 3 cut(s) | 379, 816, 901 |
| BspEI | TCCGGA | 1 cut(s) | 771 |
| BspLI | GGNNCC | 4 cut(s) | 342, 380, 756, 798 |
| BspMI | ACCTGC | 3 cut(s) | 409, 514, 970 |
| BspPI | GGATC | 8 cut(s) | 27, 61, 96, 185, 335, 348, 373, 386 |
| BspT107I | GGYRCC | 1 cut(s) | 796 |
| BsrI | ACTGG | 1 cut(s) | 1030 |
| BssECI | CCNNGG | 2 cut(s) | 212, 287 |
| BssNAI | GTATAC | 1 cut(s) | 233 |
| BssT1I | CCWWGG | 2 cut(s) | 212, 287 |
| Bst1107I | GTATAC | 1 cut(s) | 233 |
| Bst2UI | CCWGG | 1 cut(s) | 1054 |
| Bst4CI | ACNGT | 3 cut(s) | 126, 579, 701 |
| Bst6I | CTCTTC | 1 cut(s) | 687 |
| BstBAI | YACGTR | 2 cut(s) | 161, 971 |
| BstC8I | GCNNGC | 1 cut(s) | 521 |
| BstDEI | CTNAG | 4 cut(s) | 366, 765, 824, 888 |
| BstDSI | CCRYGG | 2 cut(s) | 212, 287 |
| BstEII | GGTNACC | 2 cut(s) | 199, 982 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 465 |
| BstF5I | GGATG | 2 cut(s) | 52, 665 |
| BstHHI | GCGC | 1 cut(s) | 432 |
| BstMAI | GTCTC | 2 cut(s) | 2, 915 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 766 |
| BstNI | CCWGG | 1 cut(s) | 1054 |
| BstPI | GGTNACC | 2 cut(s) | 199, 982 |
| BstSCI | CCNGG | 3 cut(s) | 381, 859, 1052 |
| BstSFI | CTRYAG | 1 cut(s) | 462 |
| BstSNI | TACGTA | 1 cut(s) | 161 |
| BstV2I | GAAGAC | 1 cut(s) | 60 |
| BstX2I | RGATCY | 5 cut(s) | 19, 88, 177, 340, 378 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 935 |
| BstYI | RGATCY | 5 cut(s) | 19, 88, 177, 340, 378 |
| BstZ17I | GTATAC | 1 cut(s) | 233 |
| BsuRI | GGCC | 2 cut(s) | 38, 1057 |
| BtgI | CCRYGG | 2 cut(s) | 212, 287 |
| BtrI | CACGTC | 1 cut(s) | 793 |
| BtsCI | GGATG | 2 cut(s) | 52, 665 |
| BtsI | GCAGTG | 1 cut(s) | 573 |
| BtsIMutI | CAGTG | 2 cut(s) | 573, 786 |
| BveI | ACCTGC | 3 cut(s) | 409, 514, 970 |
| Cac8I | GCNNGC | 1 cut(s) | 521 |
| CfoI | GCGC | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 2 cut(s) | 780, 1056 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 976, 1011 |
| CviAII | CATG | 8 cut(s) | 169, 213, 288, 302, 334, 512, 647, 709 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 4 cut(s) | 366, 765, 824, 888 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1048 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1048 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 1 cut(s) | 687 |
| EarI | CTCTTC | 1 cut(s) | 687 |
| EciI | GGCGGA | 1 cut(s) | 747 |
| Ecl136II | GAGCTC | 1 cut(s) | 654 |
| Eco105I | TACGTA | 1 cut(s) | 161 |
| Eco130I | CCWWGG | 2 cut(s) | 212, 287 |
| Eco24I | GRGCYC | 2 cut(s) | 187, 656 |
| Eco47I | GGWCC | 1 cut(s) | 780 |
| Eco53kI | GAGCTC | 1 cut(s) | 654 |
| Eco57I | CTGAAG | 1 cut(s) | 44 |
| Eco72I | CACGTG | 1 cut(s) | 971 |
| Eco88I | CYCGRG | 1 cut(s) | 655 |
| Eco91I | GGTNACC | 2 cut(s) | 199, 982 |
| EcoICRI | GAGCTC | 1 cut(s) | 654 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 465 |
| EcoO65I | GGTNACC | 2 cut(s) | 199, 982 |
| EcoRII | CCWGG | 1 cut(s) | 1052 |
| EcoT14I | CCWWGG | 2 cut(s) | 212, 287 |
| EcoT38I | GRGCYC | 2 cut(s) | 187, 656 |
| ErhI | CCWWGG | 2 cut(s) | 212, 287 |
| Esp3I | CGTCTC | 1 cut(s) | 2 |
| FaeI | CATG | 8 cut(s) | 172, 216, 291, 305, 337, 515, 650, 712 |
| FatI | CATG | 8 cut(s) | 168, 212, 287, 301, 333, 511, 646, 708 |
| FauI | CCCGC | 1 cut(s) | 985 |
| FblI | GTMKAC | 1 cut(s) | 232 |
| FokI | GGATG | 2 cut(s) | 59, 672 |
| FriOI | GRGCYC | 2 cut(s) | 187, 656 |
| FspBI | CTAG | 2 cut(s) | 819, 1031 |
| GlaI | GCGC | 1 cut(s) | 431 |
| GsaI | CCCAGC | 1 cut(s) | 935 |
| HaeIII | GGCC | 2 cut(s) | 38, 1057 |
| HapII | CCGG | 3 cut(s) | 382, 772, 860 |
| HhaI | GCGC | 1 cut(s) | 432 |
| Hin1II | CATG | 8 cut(s) | 172, 216, 291, 305, 337, 515, 650, 712 |
| Hin6I | GCGC | 1 cut(s) | 430 |
| HinP1I | GCGC | 1 cut(s) | 430 |
| HincII | GTYRAC | 2 cut(s) | 129, 1023 |
| HindII | GTYRAC | 2 cut(s) | 129, 1023 |
| HindIII | AAGCTT | 1 cut(s) | 153 |
| HinfI | GANTC | 6 cut(s) | 221, 283, 362, 412, 830, 886 |
| HpaI | GTTAAC | 1 cut(s) | 129 |
| HpaII | CCGG | 3 cut(s) | 382, 772, 860 |
| HphI | GGTGA | 1 cut(s) | 716 |
| Hpy166II | GTNNAC | 6 cut(s) | 129, 233, 575, 780, 902, 1023 |
| Hpy188I | TCNGA | 5 cut(s) | 24, 79, 226, 583, 885 |
| Hpy188III | TCNNGA | 2 cut(s) | 657, 772 |
| Hpy8I | GTNNAC | 6 cut(s) | 129, 233, 575, 780, 902, 1023 |
| HpyAV | CCTTC | 4 cut(s) | 630, 825, 890, 934 |
| HpyCH4III | ACNGT | 3 cut(s) | 126, 579, 701 |
| HpyCH4IV | ACGT | 6 cut(s) | 11, 31, 160, 293, 792, 970 |
| HpyCH4V | TGCA | 3 cut(s) | 523, 670, 968 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 766 |
| HpyF3I | CTNAG | 4 cut(s) | 366, 765, 824, 888 |
| HpySE526I | ACGT | 6 cut(s) | 11, 31, 160, 293, 792, 970 |
| Hsp92II | CATG | 8 cut(s) | 172, 216, 291, 305, 337, 515, 650, 712 |
| HspAI | GCGC | 1 cut(s) | 430 |
| Kpn2I | TCCGGA | 1 cut(s) | 771 |
| KspAI | GTTAAC | 1 cut(s) | 129 |
| LmnI | GCTCC | 3 cut(s) | 427, 760, 774 |
| LweI | GCATC | 3 cut(s) | 402, 616, 955 |
| MaeI | CTAG | 2 cut(s) | 819, 1031 |
| MaeII | ACGT | 6 cut(s) | 11, 31, 160, 293, 792, 970 |
| MaeIII | GTNAC | 3 cut(s) | 199, 704, 982 |
| MboII | GAAGA | 5 cut(s) | 37, 65, 494, 602, 704 |
| MfeI | CAATTG | 1 cut(s) | 443 |
| MflI | RGATCY | 5 cut(s) | 19, 88, 177, 340, 378 |
| MhlI | GDGCHC | 2 cut(s) | 187, 656 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 6 cut(s) | 72, 351, 443, 587, 1045, 1060 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 3 cut(s) | 292, 356, 880 |
| MmeI | TCCRAC | 2 cut(s) | 97, 561 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MroI | TCCGGA | 1 cut(s) | 771 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 128, 275, 596 |
| MslI | CAYNNNNRTG | 2 cut(s) | 510, 791 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspA1I | CMGCKG | 1 cut(s) | 931 |
| MspI | CCGG | 3 cut(s) | 382, 772, 860 |
| MspR9I | CCNGG | 3 cut(s) | 383, 861, 1054 |
| MunI | CAATTG | 1 cut(s) | 443 |
| MvaI | CCWGG | 1 cut(s) | 1054 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 766 |
| NciI | CCSGG | 2 cut(s) | 383, 861 |
| NcoI | CCATGG | 2 cut(s) | 212, 287 |
| NlaIII | CATG | 8 cut(s) | 172, 216, 291, 305, 337, 515, 650, 712 |
| NlaIV | GGNNCC | 4 cut(s) | 342, 380, 756, 798 |
| NmuCI | GTSAC | 1 cut(s) | 704 |
| OliI | CACNNNNGTG | 1 cut(s) | 791 |
| PfeI | GAWTC | 3 cut(s) | 221, 412, 830 |
| PfoI | TCCNGGA | 1 cut(s) | 859 |
| PleI | GAGTC | 3 cut(s) | 291, 356, 880 |
| PmaCI | CACGTG | 1 cut(s) | 971 |
| PmlI | CACGTG | 1 cut(s) | 971 |
| PpsI | GAGTC | 3 cut(s) | 291, 356, 880 |
| Ppu21I | YACGTR | 2 cut(s) | 161, 971 |
| Psp124BI | GAGCTC | 1 cut(s) | 656 |
| Psp6I | CCWGG | 1 cut(s) | 1052 |
| PspCI | CACGTG | 1 cut(s) | 971 |
| PspEI | GGTNACC | 2 cut(s) | 199, 982 |
| PspFI | CCCAGC | 1 cut(s) | 931 |
| PspGI | CCWGG | 1 cut(s) | 1052 |
| PspN4I | GGNNCC | 4 cut(s) | 342, 380, 756, 798 |
| PspPI | GGNCC | 2 cut(s) | 780, 1056 |
| PsuI | RGATCY | 5 cut(s) | 19, 88, 177, 340, 378 |
| PvuII | CAGCTG | 1 cut(s) | 931 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| RseI | CAYNNNNRTG | 2 cut(s) | 510, 791 |
| SacI | GAGCTC | 1 cut(s) | 656 |
| SaqAI | TTAA | 3 cut(s) | 128, 275, 596 |
| Sau96I | GGNCC | 2 cut(s) | 780, 1056 |
| SchI | GAGTC | 3 cut(s) | 292, 356, 880 |
| ScrFI | CCNGG | 3 cut(s) | 383, 861, 1054 |
| SduI | GDGCHC | 2 cut(s) | 187, 656 |
| SfaNI | GCATC | 3 cut(s) | 402, 616, 955 |
| SfcI | CTRYAG | 1 cut(s) | 462 |
| SinI | GGWCC | 1 cut(s) | 780 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 510, 791 |
| SnaBI | TACGTA | 1 cut(s) | 161 |
| Sse9I | AATT | 6 cut(s) | 72, 351, 443, 587, 1045, 1060 |
| SsiI | CCGC | 3 cut(s) | 425, 758, 992 |
| SspI | AATATT | 1 cut(s) | 958 |
| SspMI | CTAG | 2 cut(s) | 819, 1031 |
| SstI | GAGCTC | 1 cut(s) | 656 |
| StyD4I | CCNGG | 3 cut(s) | 381, 859, 1052 |
| StyI | CCWWGG | 2 cut(s) | 212, 287 |
| TaaI | ACNGT | 3 cut(s) | 126, 579, 701 |
| TaiI | ACGT | 6 cut(s) | 14, 34, 163, 296, 795, 973 |
| TaqI | TCGA | 2 cut(s) | 388, 664 |
| TasI | AATT | 6 cut(s) | 72, 351, 443, 587, 1045, 1060 |
| TfiI | GAWTC | 3 cut(s) | 221, 412, 830 |
| Tru1I | TTAA | 3 cut(s) | 128, 275, 596 |
| Tru9I | TTAA | 3 cut(s) | 128, 275, 596 |
| TscAI | CASTG | 2 cut(s) | 573, 793 |
| TseFI | GTSAC | 1 cut(s) | 704 |
| Tsp45I | GTSAC | 1 cut(s) | 704 |
| TspDTI | ATGAA | 5 cut(s) | 185, 425, 494, 500, 542 |
| TspGWI | ACGGA | 2 cut(s) | 190, 206 |
| TspRI | CASTG | 2 cut(s) | 573, 793 |
| VpaK11BI | GGWCC | 1 cut(s) | 780 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 465 |
| XapI | RAATTY | 3 cut(s) | 72, 587, 1045 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 331, 790 |
| XmiI | GTMKAC | 1 cut(s) | 232 |
| XspI | CTAG | 2 cut(s) | 819, 1031 |