ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 685 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1312 |
| AatII | GACGTC | 1 cut(s) | 652 |
| Acc36I | ACCTGC | 2 cut(s) | 685, 1177 |
| AccB1I | GGYRCC | 1 cut(s) | 697 |
| AccBSI | CCGCTC | 1 cut(s) | 1105 |
| AccI | GTMKAC | 1 cut(s) | 820 |
| AccII | CGCG | 1 cut(s) | 540 |
| AclWI | GGATC | 1 cut(s) | 588 |
| AcsI | RAATTY | 1 cut(s) | 631 |
| AcuI | CTGAAG | 1 cut(s) | 374 |
| AcyI | GRCGYC | 3 cut(s) | 17, 649, 838 |
| AfaI | GTAC | 1 cut(s) | 346 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 118, 716, 793, 1262 |
| AgsI | TTSAA | 2 cut(s) | 148, 457 |
| AluBI | AGCT | 5 cut(s) | 445, 460, 517, 605, 997 |
| AluI | AGCT | 5 cut(s) | 445, 460, 517, 605, 997 |
| Alw21I | GWGCWC | 1 cut(s) | 492 |
| Alw26I | GTCTC | 3 cut(s) | 159, 263, 920 |
| AlwI | GGATC | 1 cut(s) | 588 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| Ama87I | CYCGRG | 3 cut(s) | 415, 606, 888 |
| AoxI | GGCC | 3 cut(s) | 1142, 1166, 1192 |
| ApeKI | GCWGC | 2 cut(s) | 620, 1237 |
| ApoI | RAATTY | 1 cut(s) | 631 |
| AseI | ATTAAT | 1 cut(s) | 903 |
| AspLEI | GCGC | 2 cut(s) | 10, 625 |
| AspS9I | GGNCC | 5 cut(s) | 784, 1002, 1142, 1167, 1193 |
| AsuC2I | CCSGG | 3 cut(s) | 119, 416, 417 |
| AsuHPI | GGTGA | 3 cut(s) | 920, 991, 1039 |
| AsuNHI | GCTAGC | 1 cut(s) | 173 |
| AvaI | CYCGRG | 3 cut(s) | 415, 606, 888 |
| AvaII | GGWCC | 2 cut(s) | 784, 1002 |
| BanI | GGYRCC | 1 cut(s) | 697 |
| BbsI | GAAGAC | 1 cut(s) | 816 |
| Bbv12I | GWGCWC | 1 cut(s) | 492 |
| BbvI | GCAGC | 2 cut(s) | 607, 1249 |
| BccI | CCATC | 8 cut(s) | 173, 307, 678, 715, 745, 775, 976, 1256 |
| BceAI | ACGGC | 2 cut(s) | 69, 851 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 679, 713 |
| BciVI | GTATCC | 1 cut(s) | 254 |
| BcnI | CCSGG | 3 cut(s) | 119, 416, 417 |
| BcoDI | GTCTC | 3 cut(s) | 159, 263, 920 |
| BfaI | CTAG | 3 cut(s) | 32, 174, 1131 |
| BfoI | RGCGCY | 1 cut(s) | 11 |
| BfuAI | ACCTGC | 2 cut(s) | 685, 1177 |
| BfuI | GTATCC | 1 cut(s) | 254 |
| BisI | GCNGC | 3 cut(s) | 171, 621, 1238 |
| BlsI | GCNGC | 3 cut(s) | 172, 622, 1239 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 416, 417 |
| Bme18I | GGWCC | 2 cut(s) | 784, 1002 |
| BmeT110I | CYCGRG | 3 cut(s) | 415, 606, 888 |
| BmgT120I | GGNCC | 5 cut(s) | 784, 1002, 1142, 1167, 1193 |
| BmiI | GGNNCC | 5 cut(s) | 116, 699, 1003, 1110, 1195 |
| BmrFI | CCNGG | 3 cut(s) | 119, 416, 417 |
| BmsI | GCATC | 1 cut(s) | 681 |
| BmtI | GCTAGC | 1 cut(s) | 177 |
| BoxI | GACNNNNGTC | 2 cut(s) | 275, 816 |
| BpiI | GAAGAC | 1 cut(s) | 816 |
| BpmI | CTGGAG | 1 cut(s) | 1067 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BpuMI | CCSGG | 3 cut(s) | 119, 416, 417 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1076 |
| BsaHI | GRCGYC | 3 cut(s) | 17, 649, 838 |
| BsaJI | CCNNGG | 2 cut(s) | 137, 415 |
| BsaWI | WCCGGW | 1 cut(s) | 111 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 118, 716, 793, 1262 |
| Bse3DI | GCAATG | 1 cut(s) | 295 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1076 |
| BseDI | CCNNGG | 2 cut(s) | 137, 415 |
| BseGI | GGATG | 5 cut(s) | 193, 318, 689, 726, 786 |
| BseJI | GATNNNNATC | 1 cut(s) | 1076 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 118, 716, 793, 1262 |
| BseMI | GCAATG | 1 cut(s) | 295 |
| BseMII | CTCAG | 1 cut(s) | 852 |
| BseRI | GAGGAG | 2 cut(s) | 761, 1223 |
| BseXI | GCAGC | 2 cut(s) | 607, 1249 |
| BseYI | CCCAGC | 4 cut(s) | 997, 1139, 1292, 1298 |
| Bsh1236I | CGCG | 1 cut(s) | 540 |
| Bsh1285I | CGRYCG | 1 cut(s) | 820 |
| BshFI | GGCC | 3 cut(s) | 1144, 1168, 1194 |
| BshNI | GGYRCC | 1 cut(s) | 697 |
| BsiEI | CGRYCG | 1 cut(s) | 820 |
| BsiHKAI | GWGCWC | 1 cut(s) | 492 |
| BsiHKCI | CYCGRG | 3 cut(s) | 415, 606, 888 |
| BsiSI | CCGG | 6 cut(s) | 112, 118, 416, 701, 803, 1112 |
| BslFI | GGGAC | 2 cut(s) | 432, 775 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 118, 716, 793, 1262 |
| BsmAI | GTCTC | 3 cut(s) | 159, 263, 920 |
| BsmFI | GGGAC | 2 cut(s) | 432, 775 |
| BsnI | GGCC | 3 cut(s) | 1144, 1168, 1194 |
| BsoBI | CYCGRG | 3 cut(s) | 415, 606, 888 |
| Bsp1286I | GDGCHC | 1 cut(s) | 492 |
| Bsp143I | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| Bsp68I | TCGCGA | 1 cut(s) | 540 |
| BspANI | GGCC | 3 cut(s) | 1144, 1168, 1194 |
| BspCNI | CTCAG | 1 cut(s) | 853 |
| BspFNI | CGCG | 1 cut(s) | 540 |
| BspLI | GGNNCC | 5 cut(s) | 116, 699, 1003, 1110, 1195 |
| BspMI | ACCTGC | 2 cut(s) | 685, 1177 |
| BspOI | GCTAGC | 1 cut(s) | 177 |
| BspPI | GGATC | 1 cut(s) | 588 |
| BspT107I | GGYRCC | 1 cut(s) | 697 |
| BsrBI | CCGCTC | 1 cut(s) | 1105 |
| BsrDI | GCAATG | 1 cut(s) | 295 |
| BssECI | CCNNGG | 2 cut(s) | 137, 415 |
| BssMI | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| BssNI | GRCGYC | 3 cut(s) | 17, 649, 838 |
| BssT1I | CCWWGG | 1 cut(s) | 137 |
| Bst4CI | ACNGT | 4 cut(s) | 482, 509, 818, 850 |
| BstACI | GRCGYC | 3 cut(s) | 17, 649, 838 |
| BstC8I | GCNNGC | 1 cut(s) | 175 |
| BstDEI | CTNAG | 1 cut(s) | 861 |
| BstF5I | GGATG | 5 cut(s) | 193, 318, 689, 726, 786 |
| BstFNI | CGCG | 1 cut(s) | 540 |
| BstH2I | RGCGCY | 1 cut(s) | 11 |
| BstHHI | GCGC | 2 cut(s) | 10, 625 |
| BstKTI | GATC | 4 cut(s) | 193, 583, 828, 1074 |
| BstMAI | GTCTC | 3 cut(s) | 159, 263, 920 |
| BstMBI | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| BstMCI | CGRYCG | 1 cut(s) | 820 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 16, 170, 307 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 275, 816 |
| BstSCI | CCNGG | 3 cut(s) | 117, 414, 415 |
| BstUI | CGCG | 1 cut(s) | 540 |
| BstV1I | GCAGC | 2 cut(s) | 607, 1249 |
| BstV2I | GAAGAC | 1 cut(s) | 816 |
| BsuI | GTATCC | 1 cut(s) | 254 |
| BsuRI | GGCC | 3 cut(s) | 1144, 1168, 1194 |
| BtgZI | GCGATG | 1 cut(s) | 192 |
| BtsCI | GGATG | 5 cut(s) | 193, 318, 689, 726, 786 |
| BtuMI | TCGCGA | 1 cut(s) | 540 |
| BveI | ACCTGC | 2 cut(s) | 685, 1177 |
| Cac8I | GCNNGC | 1 cut(s) | 175 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CfoI | GCGC | 2 cut(s) | 10, 625 |
| Cfr13I | GGNCC | 5 cut(s) | 784, 1002, 1142, 1167, 1193 |
| Cfr9I | CCCGGG | 1 cut(s) | 415 |
| CseI | GACGC | 2 cut(s) | 25, 827 |
| Csp6I | GTAC | 1 cut(s) | 345 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1071, 1106 |
| CviAII | CATG | 5 cut(s) | 101, 259, 329, 404, 497 |
| CviQI | GTAC | 1 cut(s) | 345 |
| DdeI | CTNAG | 1 cut(s) | 861 |
| DpnI | GATC | 4 cut(s) | 192, 582, 827, 1073 |
| DpnII | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| DraI | TTTAAA | 1 cut(s) | 1161 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1312 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1312 |
| EciI | GGCGGA | 1 cut(s) | 696 |
| Eco130I | CCWWGG | 1 cut(s) | 137 |
| Eco47I | GGWCC | 2 cut(s) | 784, 1002 |
| Eco57I | CTGAAG | 1 cut(s) | 374 |
| Eco88I | CYCGRG | 3 cut(s) | 415, 606, 888 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1193 |
| EcoT14I | CCWWGG | 1 cut(s) | 137 |
| ErhI | CCWWGG | 1 cut(s) | 137 |
| FaeI | CATG | 5 cut(s) | 104, 262, 332, 407, 500 |
| FaiI | YATR | 9 cut(s) | 102, 108, 127, 260, 330, 405, 498, 522, 1022 |
| FaqI | GGGAC | 2 cut(s) | 432, 775 |
| FatI | CATG | 5 cut(s) | 100, 258, 328, 403, 496 |
| FauI | CCCGC | 3 cut(s) | 717, 752, 1098 |
| FblI | GTMKAC | 1 cut(s) | 820 |
| Fnu4HI | GCNGC | 3 cut(s) | 171, 621, 1238 |
| FokI | GGATG | 5 cut(s) | 200, 325, 696, 733, 793 |
| Fsp4HI | GCNGC | 3 cut(s) | 171, 621, 1238 |
| FspBI | CTAG | 3 cut(s) | 32, 174, 1131 |
| GlaI | GCGC | 2 cut(s) | 9, 624 |
| GluI | GCNGC | 3 cut(s) | 171, 621, 1238 |
| GsaI | CCCAGC | 4 cut(s) | 1001, 1143, 1296, 1302 |
| GsuI | CTGGAG | 1 cut(s) | 1067 |
| HaeII | RGCGCY | 1 cut(s) | 11 |
| HaeIII | GGCC | 3 cut(s) | 1144, 1168, 1194 |
| HapII | CCGG | 6 cut(s) | 112, 118, 416, 701, 803, 1112 |
| HgaI | GACGC | 2 cut(s) | 25, 827 |
| HhaI | GCGC | 2 cut(s) | 10, 625 |
| Hin1I | GRCGYC | 3 cut(s) | 17, 649, 838 |
| Hin1II | CATG | 5 cut(s) | 104, 262, 332, 407, 500 |
| Hin6I | GCGC | 2 cut(s) | 8, 623 |
| HinP1I | GCGC | 2 cut(s) | 8, 623 |
| HincII | GTYRAC | 1 cut(s) | 821 |
| HindII | GTYRAC | 1 cut(s) | 821 |
| HpaII | CCGG | 6 cut(s) | 112, 118, 416, 701, 803, 1112 |
| HphI | GGTGA | 3 cut(s) | 920, 991, 1039 |
| Hpy166II | GTNNAC | 2 cut(s) | 821, 1277 |
| Hpy188I | TCNGA | 6 cut(s) | 325, 354, 642, 729, 772, 1261 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 226, 280, 539, 608 |
| Hpy8I | GTNNAC | 2 cut(s) | 821, 1277 |
| Hpy99I | CGWCG | 4 cut(s) | 654, 818, 837, 925 |
| HpyAV | CCTTC | 7 cut(s) | 259, 349, 421, 571, 592, 894, 1266 |
| HpyCH4III | ACNGT | 4 cut(s) | 482, 509, 818, 850 |
| HpyCH4IV | ACGT | 1 cut(s) | 649 |
| HpyCH4V | TGCA | 2 cut(s) | 403, 694 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 16, 170, 307 |
| HpyF3I | CTNAG | 1 cut(s) | 861 |
| HpySE526I | ACGT | 1 cut(s) | 649 |
| Hsp92I | GRCGYC | 3 cut(s) | 17, 649, 838 |
| Hsp92II | CATG | 5 cut(s) | 104, 262, 332, 407, 500 |
| HspAI | GCGC | 2 cut(s) | 8, 623 |
| Kzo9I | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| LmnI | GCTCC | 5 cut(s) | 465, 495, 610, 1183, 1258 |
| Lsp1109I | GCAGC | 2 cut(s) | 607, 1249 |
| LweI | GCATC | 1 cut(s) | 681 |
| MaeI | CTAG | 3 cut(s) | 32, 174, 1131 |
| MaeII | ACGT | 1 cut(s) | 649 |
| MaeIII | GTNAC | 2 cut(s) | 49, 1247 |
| MalI | GATC | 4 cut(s) | 192, 582, 827, 1073 |
| MbiI | CCGCTC | 1 cut(s) | 1105 |
| MboI | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| MboII | GAAGA | 5 cut(s) | 214, 436, 586, 821, 861 |
| MhlI | GDGCHC | 1 cut(s) | 492 |
| MluCI | AATT | 5 cut(s) | 548, 631, 900, 956, 1162 |
| MlyI | GAGTC | 6 cut(s) | 358, 405, 494, 872, 1058, 1136 |
| MmeI | TCCRAC | 1 cut(s) | 165 |
| MseI | TTAA | 7 cut(s) | 209, 389, 903, 933, 1038, 1160, 1215 |
| MslI | CAYNNNNRTG | 3 cut(s) | 105, 211, 525 |
| MspA1I | CMGCKG | 2 cut(s) | 997, 1045 |
| MspI | CCGG | 6 cut(s) | 112, 118, 416, 701, 803, 1112 |
| MspR9I | CCNGG | 3 cut(s) | 119, 416, 417 |
| MvnI | CGCG | 1 cut(s) | 540 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 16, 170, 307 |
| NciI | CCSGG | 3 cut(s) | 119, 416, 417 |
| NdeII | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| NheI | GCTAGC | 1 cut(s) | 173 |
| NlaIII | CATG | 5 cut(s) | 104, 262, 332, 407, 500 |
| NlaIV | GGNNCC | 5 cut(s) | 116, 699, 1003, 1110, 1195 |
| NmuCI | GTSAC | 1 cut(s) | 1247 |
| NruI | TCGCGA | 1 cut(s) | 540 |
| NspI | RCATGY | 1 cut(s) | 407 |
| PaqCI | CACCTGC | 1 cut(s) | 685 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 646 |
| PfeI | GAWTC | 5 cut(s) | 229, 320, 535, 797, 917 |
| PflFI | GACNNNGTC | 1 cut(s) | 837 |
| PkrI | GCNGC | 3 cut(s) | 172, 622, 1239 |
| PleI | GAGTC | 6 cut(s) | 357, 405, 494, 871, 1057, 1135 |
| PpsI | GAGTC | 6 cut(s) | 357, 405, 494, 871, 1057, 1135 |
| PshAI | GACNNNNGTC | 2 cut(s) | 275, 816 |
| PshBI | ATTAAT | 1 cut(s) | 903 |
| PspFI | CCCAGC | 4 cut(s) | 997, 1139, 1292, 1298 |
| PspN4I | GGNNCC | 5 cut(s) | 116, 699, 1003, 1110, 1195 |
| PspPI | GGNCC | 5 cut(s) | 784, 1002, 1142, 1167, 1193 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| PsyI | GACNNNGTC | 1 cut(s) | 837 |
| PvuII | CAGCTG | 1 cut(s) | 997 |
| RruI | TCGCGA | 1 cut(s) | 540 |
| RsaI | GTAC | 1 cut(s) | 346 |
| RsaNI | GTAC | 1 cut(s) | 345 |
| RseI | CAYNNNNRTG | 3 cut(s) | 105, 211, 525 |
| SalI | GTCGAC | 1 cut(s) | 819 |
| SaqAI | TTAA | 7 cut(s) | 209, 389, 903, 933, 1038, 1160, 1215 |
| SatI | GCNGC | 3 cut(s) | 171, 621, 1238 |
| Sau3AI | GATC | 4 cut(s) | 190, 580, 825, 1071 |
| Sau96I | GGNCC | 5 cut(s) | 784, 1002, 1142, 1167, 1193 |
| SchI | GAGTC | 6 cut(s) | 358, 405, 494, 872, 1058, 1136 |
| ScrFI | CCNGG | 3 cut(s) | 119, 416, 417 |
| SduI | GDGCHC | 1 cut(s) | 492 |
| SfaNI | GCATC | 1 cut(s) | 681 |
| SinI | GGWCC | 2 cut(s) | 784, 1002 |
| SmaI | CCCGGG | 1 cut(s) | 417 |
| SmiI | ATTTAAAT | 1 cut(s) | 1161 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 105, 211, 525 |
| SmlI | CTYRAG | 1 cut(s) | 65 |
| SmoI | CTYRAG | 1 cut(s) | 65 |
| Sse9I | AATT | 5 cut(s) | 548, 631, 900, 956, 1162 |
| SspMI | CTAG | 3 cut(s) | 32, 174, 1131 |
| StyD4I | CCNGG | 3 cut(s) | 117, 414, 415 |
| StyI | CCWWGG | 1 cut(s) | 137 |
| SwaI | ATTTAAAT | 1 cut(s) | 1161 |
| TaaI | ACNGT | 4 cut(s) | 482, 509, 818, 850 |
| TaiI | ACGT | 1 cut(s) | 652 |
| TaqI | TCGA | 7 cut(s) | 441, 503, 627, 689, 789, 820, 920 |
| TasI | AATT | 5 cut(s) | 548, 631, 900, 956, 1162 |
| TauI | GCSGC | 1 cut(s) | 173 |
| TfiI | GAWTC | 5 cut(s) | 229, 320, 535, 797, 917 |
| Tru1I | TTAA | 7 cut(s) | 209, 389, 903, 933, 1038, 1160, 1215 |
| Tru9I | TTAA | 7 cut(s) | 209, 389, 903, 933, 1038, 1160, 1215 |
| TseFI | GTSAC | 1 cut(s) | 1247 |
| TseI | GCWGC | 2 cut(s) | 620, 1237 |
| Tsp45I | GTSAC | 1 cut(s) | 1247 |
| TspDTI | ATGAA | 4 cut(s) | 17, 117, 195, 509 |
| TspGWI | ACGGA | 2 cut(s) | 938, 994 |
| TspMI | CCCGGG | 1 cut(s) | 415 |
| Tth111I | GACNNNGTC | 1 cut(s) | 837 |
| VpaK11BI | GGWCC | 2 cut(s) | 784, 1002 |
| VspI | ATTAAT | 1 cut(s) | 903 |
| XapI | RAATTY | 1 cut(s) | 631 |
| XceI | RCATGY | 1 cut(s) | 407 |
| XmaI | CCCGGG | 1 cut(s) | 415 |
| XmiI | GTMKAC | 1 cut(s) | 820 |
| XspI | CTAG | 3 cut(s) | 32, 174, 1131 |
| ZraI | GACGTC | 1 cut(s) | 650 |