Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1368 |
| AarI | CACCTGC | 1 cut(s) | 696 |
| Acc36I | ACCTGC | 3 cut(s) | 219, 696, 1153 |
| AccB1I | GGYRCC | 1 cut(s) | 928 |
| AccI | GTMKAC | 1 cut(s) | 26 |
| AciI | CCGC | 9 cut(s) | 50, 633, 677, 956, 965, 1073, 1170, 1298, 1350 |
| AclWI | GGATC | 9 cut(s) | 96, 185, 550, 563, 651, 737, 1035, 1048, 1119 |
| AcsI | RAATTY | 4 cut(s) | 220, 335, 770, 1207 |
| AcuI | CTGAAG | 1 cut(s) | 1239 |
| AfaI | GTAC | 3 cut(s) | 107, 166, 354 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 794, 925, 1572 |
| AflII | CTTAAG | 2 cut(s) | 59, 98 |
| AgsI | TTSAA | 9 cut(s) | 145, 204, 212, 349, 1154, 1206, 1213, 1288, 1540 |
| AjiI | CACGTC | 1 cut(s) | 979 |
| AjnI | CCWGG | 1 cut(s) | 793 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1017, 1049 |
| AluBI | AGCT | 4 cut(s) | 654, 867, 1243, 1424 |
| AluI | AGCT | 4 cut(s) | 654, 867, 1243, 1424 |
| Alw26I | GTCTC | 6 cut(s) | 99, 115, 417, 477, 929, 1480 |
| AlwI | GGATC | 9 cut(s) | 96, 185, 550, 563, 651, 737, 1035, 1048, 1119 |
| Ama87I | CYCGRG | 1 cut(s) | 1120 |
| AoxI | GGCC | 3 cut(s) | 775, 842, 1277 |
| ApeKI | GCWGC | 2 cut(s) | 282, 1421 |
| ApoI | RAATTY | 4 cut(s) | 220, 335, 770, 1207 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1199, 1231 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 140 |
| AspS9I | GGNCC | 7 cut(s) | 55, 607, 916, 958, 1278, 1562, 1575 |
| AsuHPI | GGTGA | 6 cut(s) | 25, 206, 487, 520, 914, 1062 |
| AsuII | TTCGAA | 1 cut(s) | 134 |
| AvaI | CYCGRG | 1 cut(s) | 1120 |
| AvaII | GGWCC | 6 cut(s) | 55, 607, 916, 958, 1562, 1575 |
| AxyI | CCTNAGG | 2 cut(s) | 471, 1293 |
| BamHI | GGATCC | 2 cut(s) | 555, 1040 |
| BanI | GGYRCC | 1 cut(s) | 928 |
| BauI | CACGAG | 1 cut(s) | 1583 |
| BbsI | GAAGAC | 2 cut(s) | 719, 1059 |
| BbvI | GCAGC | 2 cut(s) | 294, 1433 |
| BccI | CCATC | 8 cut(s) | 323, 540, 893, 946, 1078, 1370, 1552, 1587 |
| BciT130I | CCWGG | 1 cut(s) | 795 |
| BciVI | GTATCC | 1 cut(s) | 1090 |
| BcoDI | GTCTC | 6 cut(s) | 99, 115, 417, 477, 929, 1480 |
| BfaI | CTAG | 3 cut(s) | 657, 860, 1572 |
| BfrI | CTTAAG | 2 cut(s) | 59, 98 |
| BfuAI | ACCTGC | 3 cut(s) | 219, 696, 1153 |
| BfuI | GTATCC | 1 cut(s) | 1090 |
| BglII | AGATCT | 1 cut(s) | 1568 |
| BisI | GCNGC | 2 cut(s) | 283, 1422 |
| BlpI | GCTNAGC | 1 cut(s) | 1239 |
| BlsI | GCNGC | 2 cut(s) | 284, 1423 |
| BmcAI | AGTACT | 2 cut(s) | 107, 166 |
| Bme1390I | CCNGG | 1 cut(s) | 795 |
| Bme18I | GGWCC | 6 cut(s) | 55, 607, 916, 958, 1562, 1575 |
| BmeT110I | CYCGRG | 1 cut(s) | 1120 |
| BmgBI | CACGTC | 1 cut(s) | 979 |
| BmgT120I | GGNCC | 7 cut(s) | 55, 607, 916, 958, 1278, 1562, 1575 |
| BmiI | GGNNCC | 8 cut(s) | 557, 917, 930, 960, 1042, 1563, 1564, 1577 |
| BmrFI | CCNGG | 1 cut(s) | 795 |
| BmrI | ACTGGG | 1 cut(s) | 501 |
| BmsI | GCATC | 1 cut(s) | 795 |
| BmuI | ACTGGG | 1 cut(s) | 501 |
| BpiI | GAAGAC | 2 cut(s) | 719, 1059 |
| Bpu10I | CCTNAGC | 1 cut(s) | 789 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1239 |
| Bpu14I | TTCGAA | 1 cut(s) | 134 |
| BpuEI | CTTGAG | 1 cut(s) | 944 |
| BsaBI | GATNNNNATC | 1 cut(s) | 554 |
| BsaJI | CCNNGG | 1 cut(s) | 287 |
| BsaWI | WCCGGW | 1 cut(s) | 931 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 77, 107, 567, 597, 926, 956, 1300, 1330 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 794, 925, 1572 |
| Bse1I | ACTGG | 4 cut(s) | 39, 113, 496, 600 |
| Bse21I | CCTNAGG | 2 cut(s) | 471, 1293 |
| Bse8I | GATNNNNATC | 1 cut(s) | 554 |
| BseBI | CCWGG | 1 cut(s) | 795 |
| BseDI | CCNNGG | 1 cut(s) | 287 |
| BseGI | GGATG | 8 cut(s) | 334, 466, 529, 810, 904, 957, 1131, 1360 |
| BseJI | GATNNNNATC | 1 cut(s) | 554 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 794, 925, 1572 |
| BseMII | CTCAG | 5 cut(s) | 462, 1094, 1230, 1284, 1346 |
| BseNI | ACTGG | 4 cut(s) | 39, 113, 496, 600 |
| BseRI | GAGGAG | 1 cut(s) | 1197 |
| BseXI | GCAGC | 2 cut(s) | 294, 1433 |
| BsgI | GTGCAG | 2 cut(s) | 472, 716 |
| BshFI | GGCC | 3 cut(s) | 777, 844, 1279 |
| BshNI | GGYRCC | 1 cut(s) | 928 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1120 |
| BsiSI | CCGG | 1 cut(s) | 932 |
| BslFI | GGGAC | 4 cut(s) | 929, 944, 1186, 1548 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 794, 925, 1572 |
| BsmAI | GTCTC | 6 cut(s) | 99, 115, 417, 477, 929, 1480 |
| BsmBI | CGTCTC | 1 cut(s) | 1480 |
| BsmFI | GGGAC | 4 cut(s) | 929, 944, 1186, 1548 |
| BsnI | GGCC | 3 cut(s) | 777, 844, 1279 |
| BsoBI | CYCGRG | 1 cut(s) | 1120 |
| Bsp119I | TTCGAA | 1 cut(s) | 134 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 287 |
| BspACI | CCGC | 9 cut(s) | 50, 633, 677, 956, 965, 1073, 1170, 1298, 1350 |
| BspANI | GGCC | 3 cut(s) | 777, 844, 1279 |
| BspCNI | CTCAG | 5 cut(s) | 463, 1093, 1231, 1285, 1345 |
| BspHI | TCATGA | 1 cut(s) | 1531 |
| BspLI | GGNNCC | 8 cut(s) | 557, 917, 930, 960, 1042, 1563, 1564, 1577 |
| BspMI | ACCTGC | 3 cut(s) | 219, 696, 1153 |
| BspPI | GGATC | 9 cut(s) | 96, 185, 550, 563, 651, 737, 1035, 1048, 1119 |
| BspT104I | TTCGAA | 1 cut(s) | 134 |
| BspT107I | GGYRCC | 1 cut(s) | 928 |
| BspTI | CTTAAG | 2 cut(s) | 59, 98 |
| BsrI | ACTGG | 4 cut(s) | 39, 113, 496, 600 |
| BssECI | CCNNGG | 1 cut(s) | 287 |
| BssSI | CACGAG | 1 cut(s) | 1583 |
| BssT1I | CCWWGG | 1 cut(s) | 287 |
| Bst2BI | CACGAG | 1 cut(s) | 1583 |
| Bst2UI | CCWGG | 1 cut(s) | 795 |
| Bst4CI | ACNGT | 2 cut(s) | 532, 1316 |
| BstAFI | CTTAAG | 2 cut(s) | 59, 98 |
| BstBI | TTCGAA | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 3 cut(s) | 396, 1245, 1419 |
| BstDEI | CTNAG | 8 cut(s) | 275, 471, 539, 789, 1080, 1239, 1293, 1332 |
| BstDSI | CCRYGG | 1 cut(s) | 287 |
| BstF5I | GGATG | 8 cut(s) | 334, 466, 529, 810, 904, 957, 1131, 1360 |
| BstMAI | GTCTC | 6 cut(s) | 99, 115, 417, 477, 929, 1480 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 630, 1244, 1508 |
| BstNI | CCWGG | 1 cut(s) | 795 |
| BstSCI | CCNGG | 1 cut(s) | 793 |
| BstV1I | GCAGC | 2 cut(s) | 294, 1433 |
| BstV2I | GAAGAC | 2 cut(s) | 719, 1059 |
| BstX2I | RGATCY | 6 cut(s) | 88, 177, 555, 1040, 1124, 1568 |
| BstYI | RGATCY | 6 cut(s) | 88, 177, 555, 1040, 1124, 1568 |
| Bsu36I | CCTNAGG | 2 cut(s) | 471, 1293 |
| BsuI | GTATCC | 1 cut(s) | 1090 |
| BsuRI | GGCC | 3 cut(s) | 777, 844, 1279 |
| BtgI | CCRYGG | 1 cut(s) | 287 |
| BtrI | CACGTC | 1 cut(s) | 979 |
| BtsCI | GGATG | 8 cut(s) | 334, 466, 529, 810, 904, 957, 1131, 1360 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| BveI | ACCTGC | 3 cut(s) | 219, 696, 1153 |
| Cac8I | GCNNGC | 3 cut(s) | 396, 1245, 1419 |
| CciI | TCATGA | 1 cut(s) | 1531 |
| Cfr13I | GGNCC | 7 cut(s) | 55, 607, 916, 958, 1278, 1562, 1575 |
| Csp6I | GTAC | 3 cut(s) | 106, 165, 353 |
| CviAII | CATG | 6 cut(s) | 288, 647, 749, 1268, 1448, 1532 |
| CviQI | GTAC | 3 cut(s) | 106, 165, 353 |
| DdeI | CTNAG | 8 cut(s) | 275, 471, 539, 789, 1080, 1239, 1293, 1332 |
| DraI | TTTAAA | 1 cut(s) | 1428 |
| EciI | GGCGGA | 2 cut(s) | 65, 954 |
| Eco130I | CCWWGG | 1 cut(s) | 287 |
| Eco47I | GGWCC | 6 cut(s) | 55, 607, 916, 958, 1562, 1575 |
| Eco57I | CTGAAG | 1 cut(s) | 1239 |
| Eco81I | CCTNAGG | 2 cut(s) | 471, 1293 |
| Eco88I | CYCGRG | 1 cut(s) | 1120 |
| EcoO109I | RGGNCCY | 4 cut(s) | 55, 607, 1562, 1575 |
| EcoRI | GAATTC | 1 cut(s) | 220 |
| EcoRII | CCWGG | 1 cut(s) | 793 |
| EcoT14I | CCWWGG | 1 cut(s) | 287 |
| ErhI | CCWWGG | 1 cut(s) | 287 |
| Esp3I | CGTCTC | 1 cut(s) | 1480 |
| FaeI | CATG | 6 cut(s) | 291, 650, 752, 1271, 1451, 1535 |
| FaqI | GGGAC | 4 cut(s) | 929, 944, 1186, 1548 |
| FatI | CATG | 6 cut(s) | 287, 646, 748, 1267, 1447, 1531 |
| FauI | CCCGC | 3 cut(s) | 670, 1163, 1343 |
| FblI | GTMKAC | 1 cut(s) | 26 |
| Fnu4HI | GCNGC | 2 cut(s) | 283, 1422 |
| FokI | GGATG | 8 cut(s) | 341, 473, 536, 817, 911, 964, 1118, 1367 |
| Fsp4HI | GCNGC | 2 cut(s) | 283, 1422 |
| FspBI | CTAG | 3 cut(s) | 657, 860, 1572 |
| GluI | GCNGC | 2 cut(s) | 283, 1422 |
| HaeIII | GGCC | 3 cut(s) | 777, 844, 1279 |
| HapII | CCGG | 1 cut(s) | 932 |
| Hin1II | CATG | 6 cut(s) | 291, 650, 752, 1271, 1451, 1535 |
| HincII | GTYRAC | 1 cut(s) | 466 |
| HindII | GTYRAC | 1 cut(s) | 466 |
| HpaII | CCGG | 1 cut(s) | 932 |
| HphI | GGTGA | 6 cut(s) | 25, 206, 487, 520, 914, 1062 |
| Hpy166II | GTNNAC | 3 cut(s) | 27, 466, 665 |
| Hpy188I | TCNGA | 9 cut(s) | 162, 369, 506, 512, 560, 880, 976, 1083, 1129 |
| Hpy188III | TCNNGA | 4 cut(s) | 573, 1122, 1532, 1583 |
| Hpy8I | GTNNAC | 3 cut(s) | 27, 466, 665 |
| Hpy99I | CGWCG | 2 cut(s) | 80, 976 |
| HpyAV | CCTTC | 9 cut(s) | 420, 620, 788, 825, 905, 978, 1263, 1469, 1485 |
| HpyCH4III | ACNGT | 2 cut(s) | 532, 1316 |
| HpyCH4IV | ACGT | 1 cut(s) | 978 |
| HpyCH4V | TGCA | 5 cut(s) | 398, 489, 697, 808, 1162 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 630, 1244, 1508 |
| HpyF3I | CTNAG | 8 cut(s) | 275, 471, 539, 789, 1080, 1239, 1293, 1332 |
| HpySE526I | ACGT | 1 cut(s) | 978 |
| Hsp92II | CATG | 6 cut(s) | 291, 650, 752, 1271, 1451, 1535 |
| KflI | GGGWCCC | 1 cut(s) | 1562 |
| LmnI | GCTCC | 3 cut(s) | 1184, 1342, 1494 |
| Lsp1109I | GCAGC | 2 cut(s) | 294, 1433 |
| LweI | GCATC | 1 cut(s) | 795 |
| MaeI | CTAG | 3 cut(s) | 657, 860, 1572 |
| MaeII | ACGT | 1 cut(s) | 978 |
| MaeIII | GTNAC | 5 cut(s) | 153, 526, 1018, 1310, 1525 |
| MboII | GAAGA | 8 cut(s) | 17, 555, 724, 810, 1059, 1166, 1408, 1459 |
| MfeI | CAATTG | 1 cut(s) | 1014 |
| MflI | RGATCY | 6 cut(s) | 88, 177, 555, 1040, 1124, 1568 |
| MlyI | GAGTC | 4 cut(s) | 117, 161, 1318, 1322 |
| MmeI | TCCRAC | 7 cut(s) | 501, 583, 779, 888, 954, 1071, 1152 |
| MroXI | GAANNNNTTC | 1 cut(s) | 140 |
| MseI | TTAA | 8 cut(s) | 60, 69, 99, 189, 735, 1227, 1427, 1544 |
| MspCI | CTTAAG | 2 cut(s) | 59, 98 |
| MspI | CCGG | 1 cut(s) | 932 |
| MspR9I | CCNGG | 1 cut(s) | 795 |
| MunI | CAATTG | 1 cut(s) | 1014 |
| MvaI | CCWGG | 1 cut(s) | 795 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 630, 1244, 1508 |
| NcoI | CCATGG | 1 cut(s) | 287 |
| NlaIII | CATG | 6 cut(s) | 291, 650, 752, 1271, 1451, 1535 |
| NlaIV | GGNNCC | 8 cut(s) | 557, 917, 930, 960, 1042, 1563, 1564, 1577 |
| NmeAIII | GCCGAG | 1 cut(s) | 299 |
| NmuCI | GTSAC | 3 cut(s) | 153, 526, 1310 |
| NspV | TTCGAA | 1 cut(s) | 134 |
| PaeR7I | CTCGAG | 1 cut(s) | 1120 |
| PagI | TCATGA | 1 cut(s) | 1531 |
| PaqCI | CACCTGC | 1 cut(s) | 696 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1486 |
| PdmI | GAANNNNTTC | 1 cut(s) | 140 |
| PfeI | GAWTC | 6 cut(s) | 341, 364, 379, 507, 875, 1550 |
| PkrI | GCNGC | 2 cut(s) | 284, 1423 |
| PleI | GAGTC | 4 cut(s) | 117, 160, 1317, 1322 |
| PpsI | GAGTC | 4 cut(s) | 117, 160, 1317, 1322 |
| PpuMI | RGGWCCY | 4 cut(s) | 55, 607, 1562, 1575 |
| PsiI | TTATAA | 1 cut(s) | 1368 |
| Psp5II | RGGWCCY | 4 cut(s) | 55, 607, 1562, 1575 |
| Psp6I | CCWGG | 1 cut(s) | 793 |
| PspGI | CCWGG | 1 cut(s) | 793 |
| PspN4I | GGNNCC | 8 cut(s) | 557, 917, 930, 960, 1042, 1563, 1564, 1577 |
| PspPI | GGNCC | 7 cut(s) | 55, 607, 916, 958, 1278, 1562, 1575 |
| PspPPI | RGGWCCY | 4 cut(s) | 55, 607, 1562, 1575 |
| PsuI | RGATCY | 6 cut(s) | 88, 177, 555, 1040, 1124, 1568 |
| RsaI | GTAC | 3 cut(s) | 107, 166, 354 |
| RsaNI | GTAC | 3 cut(s) | 106, 165, 353 |
| SaqAI | TTAA | 8 cut(s) | 60, 69, 99, 189, 735, 1227, 1427, 1544 |
| SatI | GCNGC | 2 cut(s) | 283, 1422 |
| Sau96I | GGNCC | 7 cut(s) | 55, 607, 916, 958, 1278, 1562, 1575 |
| ScaI | AGTACT | 2 cut(s) | 107, 166 |
| SchI | GAGTC | 4 cut(s) | 117, 161, 1318, 1322 |
| ScrFI | CCNGG | 1 cut(s) | 795 |
| SfaNI | GCATC | 1 cut(s) | 795 |
| Sfr274I | CTCGAG | 1 cut(s) | 1120 |
| SfuI | TTCGAA | 1 cut(s) | 134 |
| SinI | GGWCC | 6 cut(s) | 55, 607, 916, 958, 1562, 1575 |
| SlaI | CTCGAG | 1 cut(s) | 1120 |
| SmlI | CTYRAG | 4 cut(s) | 59, 98, 923, 1120 |
| SmoI | CTYRAG | 4 cut(s) | 59, 98, 923, 1120 |
| SsiI | CCGC | 9 cut(s) | 50, 633, 677, 956, 965, 1073, 1170, 1298, 1350 |
| SspI | AATATT | 1 cut(s) | 1033 |
| SspMI | CTAG | 3 cut(s) | 657, 860, 1572 |
| StyD4I | CCNGG | 1 cut(s) | 793 |
| StyI | CCWWGG | 1 cut(s) | 287 |
| TaaI | ACNGT | 2 cut(s) | 532, 1316 |
| TaiI | ACGT | 1 cut(s) | 981 |
| TaqI | TCGA | 5 cut(s) | 75, 134, 1114, 1121, 1145 |
| TatI | WGTACW | 2 cut(s) | 105, 164 |
| TfiI | GAWTC | 6 cut(s) | 341, 364, 379, 507, 875, 1550 |
| Tru1I | TTAA | 8 cut(s) | 60, 69, 99, 189, 735, 1227, 1427, 1544 |
| Tru9I | TTAA | 8 cut(s) | 60, 69, 99, 189, 735, 1227, 1427, 1544 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 3 cut(s) | 153, 526, 1310 |
| TseI | GCWGC | 2 cut(s) | 282, 1421 |
| Tsp45I | GTSAC | 3 cut(s) | 153, 526, 1310 |
| TspDTI | ATGAA | 2 cut(s) | 185, 770 |
| TspGWI | ACGGA | 2 cut(s) | 1037, 1543 |
| TspRI | CASTG | 1 cut(s) | 496 |
| Vha464I | CTTAAG | 2 cut(s) | 59, 98 |
| VpaK11BI | GGWCC | 6 cut(s) | 55, 607, 916, 958, 1562, 1575 |
| XapI | RAATTY | 4 cut(s) | 220, 335, 770, 1207 |
| XhoI | CTCGAG | 1 cut(s) | 1120 |
| XmiI | GTMKAC | 1 cut(s) | 26 |
| XmnI | GAANNNNTTC | 1 cut(s) | 140 |
| XspI | CTAG | 3 cut(s) | 657, 860, 1572 |
| ZrmI | AGTACT | 2 cut(s) | 107, 166 |