Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 904 |
| Acc16I | TGCGCA | 1 cut(s) | 424 |
| Acc36I | ACCTGC | 2 cut(s) | 519, 904 |
| AccII | CGCG | 1 cut(s) | 229 |
| AciI | CCGC | 1 cut(s) | 227 |
| AclWI | GGATC | 3 cut(s) | 490, 832, 854 |
| AcsI | RAATTY | 1 cut(s) | 1073 |
| AfaI | GTAC | 3 cut(s) | 584, 879, 1022 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 231, 439 |
| AflII | CTTAAG | 1 cut(s) | 1027 |
| AgsI | TTSAA | 5 cut(s) | 52, 97, 164, 247, 294 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 329 |
| AjnI | CCWGG | 1 cut(s) | 1014 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 126, 158 |
| AluBI | AGCT | 7 cut(s) | 140, 177, 203, 657, 912, 1081, 1113 |
| AluI | AGCT | 7 cut(s) | 140, 177, 203, 657, 912, 1081, 1113 |
| AlwI | GGATC | 3 cut(s) | 490, 832, 854 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 126 |
| Ama87I | CYCGRG | 1 cut(s) | 433 |
| AoxI | GGCC | 1 cut(s) | 978 |
| ApeKI | GCWGC | 1 cut(s) | 554 |
| ApoI | RAATTY | 1 cut(s) | 1073 |
| AspLEI | GCGC | 4 cut(s) | 44, 149, 425, 706 |
| AspS9I | GGNCC | 2 cut(s) | 508, 978 |
| AsuHPI | GGTGA | 2 cut(s) | 218, 988 |
| AvaI | CYCGRG | 1 cut(s) | 433 |
| AvaII | GGWCC | 1 cut(s) | 508 |
| BaeGI | GKGCMC | 1 cut(s) | 740 |
| BanII | GRGCYC | 1 cut(s) | 547 |
| BbsI | GAAGAC | 1 cut(s) | 176 |
| BbvI | GCAGC | 1 cut(s) | 541 |
| BccI | CCATC | 6 cut(s) | 83, 223, 437, 685, 715, 1115 |
| BceAI | ACGGC | 2 cut(s) | 59, 287 |
| BciT130I | CCWGG | 1 cut(s) | 1016 |
| BfaI | CTAG | 3 cut(s) | 180, 731, 857 |
| BfmI | CTRYAG | 1 cut(s) | 897 |
| BfoI | RGCGCY | 1 cut(s) | 150 |
| BfrI | CTTAAG | 1 cut(s) | 1027 |
| BfuAI | ACCTGC | 2 cut(s) | 519, 904 |
| BisI | GCNGC | 1 cut(s) | 555 |
| BlsI | GCNGC | 1 cut(s) | 556 |
| Bme1390I | CCNGG | 1 cut(s) | 1016 |
| Bme18I | GGWCC | 1 cut(s) | 508 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 329 |
| BmeT110I | CYCGRG | 1 cut(s) | 433 |
| BmgT120I | GGNCC | 2 cut(s) | 508, 978 |
| BmiI | GGNNCC | 1 cut(s) | 610 |
| BmrFI | CCNGG | 1 cut(s) | 1016 |
| BmsI | GCATC | 6 cut(s) | 480, 523, 605, 841, 1041, 1093 |
| BpiI | GAAGAC | 1 cut(s) | 176 |
| BpmI | CTGGAG | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 44, 74 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 231, 439 |
| Bse1I | ACTGG | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 1016 |
| BseGI | GGATG | 3 cut(s) | 94, 448, 596 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 231, 439 |
| BseNI | ACTGG | 1 cut(s) | 63 |
| BseRI | GAGGAG | 1 cut(s) | 7 |
| BseSI | GKGCMC | 1 cut(s) | 740 |
| BseXI | GCAGC | 1 cut(s) | 541 |
| Bsh1236I | CGCG | 1 cut(s) | 229 |
| BshFI | GGCC | 1 cut(s) | 980 |
| BsiHKCI | CYCGRG | 1 cut(s) | 433 |
| BslFI | GGGAC | 1 cut(s) | 592 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 231, 439 |
| BsmFI | GGGAC | 1 cut(s) | 592 |
| BsmI | GAATGC | 1 cut(s) | 425 |
| BsnI | GGCC | 1 cut(s) | 980 |
| BsoBI | CYCGRG | 1 cut(s) | 433 |
| Bsp1286I | GDGCHC | 2 cut(s) | 547, 740 |
| Bsp143I | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| BspACI | CCGC | 1 cut(s) | 227 |
| BspANI | GGCC | 1 cut(s) | 980 |
| BspFNI | CGCG | 1 cut(s) | 229 |
| BspHI | TCATGA | 1 cut(s) | 871 |
| BspLI | GGNNCC | 1 cut(s) | 610 |
| BspMAI | CTGCAG | 1 cut(s) | 901 |
| BspMI | ACCTGC | 2 cut(s) | 519, 904 |
| BspPI | GGATC | 3 cut(s) | 490, 832, 854 |
| BspQI | GCTCTTC | 3 cut(s) | 204, 273, 465 |
| BspTI | CTTAAG | 1 cut(s) | 1027 |
| BsrI | ACTGG | 1 cut(s) | 63 |
| BssMI | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| Bst2UI | CCWGG | 1 cut(s) | 1016 |
| Bst4CI | ACNGT | 1 cut(s) | 400 |
| Bst6I | CTCTTC | 4 cut(s) | 25, 204, 273, 465 |
| BstAFI | CTTAAG | 1 cut(s) | 1027 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 1 cut(s) | 469 |
| BstF5I | GGATG | 3 cut(s) | 94, 448, 596 |
| BstFNI | CGCG | 1 cut(s) | 229 |
| BstH2I | RGCGCY | 1 cut(s) | 150 |
| BstHHI | GCGC | 4 cut(s) | 44, 149, 425, 706 |
| BstKTI | GATC | 5 cut(s) | 381, 485, 809, 827, 862 |
| BstMBI | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 126, 146, 464, 542, 551, 560, 712, 977 |
| BstNI | CCWGG | 1 cut(s) | 1016 |
| BstSCI | CCNGG | 1 cut(s) | 1014 |
| BstSFI | CTRYAG | 1 cut(s) | 897 |
| BstSLI | GKGCMC | 1 cut(s) | 740 |
| BstUI | CGCG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 1 cut(s) | 541 |
| BstV2I | GAAGAC | 1 cut(s) | 176 |
| BstX2I | RGATCY | 1 cut(s) | 859 |
| BstYI | RGATCY | 1 cut(s) | 859 |
| BsuRI | GGCC | 1 cut(s) | 980 |
| BtsCI | GGATG | 3 cut(s) | 94, 448, 596 |
| BtsI | GCAGTG | 1 cut(s) | 924 |
| BtsIMutI | CAGTG | 2 cut(s) | 492, 924 |
| BveI | ACCTGC | 2 cut(s) | 519, 904 |
| Cac8I | GCNNGC | 1 cut(s) | 469 |
| CaiI | CAGNNNCTG | 1 cut(s) | 126 |
| CciI | TCATGA | 1 cut(s) | 871 |
| CfoI | GCGC | 4 cut(s) | 44, 149, 425, 706 |
| Cfr13I | GGNCC | 2 cut(s) | 508, 978 |
| CseI | GACGC | 1 cut(s) | 218 |
| Csp6I | GTAC | 3 cut(s) | 583, 878, 1021 |
| CviAII | CATG | 3 cut(s) | 505, 761, 872 |
| CviQI | GTAC | 3 cut(s) | 583, 878, 1021 |
| DpnI | GATC | 5 cut(s) | 380, 484, 808, 826, 861 |
| DpnII | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| DriI | GACNNNNNGTC | 1 cut(s) | 329 |
| Eam1104I | CTCTTC | 4 cut(s) | 25, 204, 273, 465 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 329 |
| EarI | CTCTTC | 4 cut(s) | 25, 204, 273, 465 |
| Eco24I | GRGCYC | 1 cut(s) | 547 |
| Eco47I | GGWCC | 1 cut(s) | 508 |
| Eco88I | CYCGRG | 1 cut(s) | 433 |
| EcoRII | CCWGG | 1 cut(s) | 1014 |
| EcoT38I | GRGCYC | 1 cut(s) | 547 |
| FaeI | CATG | 3 cut(s) | 508, 764, 875 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 77, 109 |
| FaqI | GGGAC | 1 cut(s) | 592 |
| FatI | CATG | 3 cut(s) | 504, 760, 871 |
| FauI | CCCGC | 1 cut(s) | 234 |
| FauNDI | CATATG | 1 cut(s) | 352 |
| Fnu4HI | GCNGC | 1 cut(s) | 555 |
| FokI | GGATG | 3 cut(s) | 101, 455, 583 |
| FriOI | GRGCYC | 1 cut(s) | 547 |
| Fsp4HI | GCNGC | 1 cut(s) | 555 |
| FspBI | CTAG | 3 cut(s) | 180, 731, 857 |
| FspI | TGCGCA | 1 cut(s) | 424 |
| GlaI | GCGC | 4 cut(s) | 43, 148, 424, 705 |
| GluI | GCNGC | 1 cut(s) | 555 |
| GsuI | CTGGAG | 1 cut(s) | 46 |
| HaeII | RGCGCY | 1 cut(s) | 150 |
| HaeIII | GGCC | 1 cut(s) | 980 |
| HgaI | GACGC | 1 cut(s) | 218 |
| HhaI | GCGC | 4 cut(s) | 44, 149, 425, 706 |
| Hin1II | CATG | 3 cut(s) | 508, 764, 875 |
| Hin6I | GCGC | 4 cut(s) | 42, 147, 423, 704 |
| HinP1I | GCGC | 4 cut(s) | 42, 147, 423, 704 |
| HinfI | GANTC | 6 cut(s) | 59, 107, 123, 621, 839, 922 |
| HphI | GGTGA | 2 cut(s) | 218, 988 |
| Hpy188I | TCNGA | 5 cut(s) | 601, 620, 637, 663, 961 |
| Hpy188III | TCNNGA | 3 cut(s) | 272, 810, 872 |
| Hpy99I | CGWCG | 1 cut(s) | 234 |
| HpyAV | CCTTC | 2 cut(s) | 58, 931 |
| HpyCH4III | ACNGT | 1 cut(s) | 400 |
| HpyCH4IV | ACGT | 2 cut(s) | 581, 956 |
| HpyCH4V | TGCA | 9 cut(s) | 514, 557, 563, 715, 854, 883, 893, 899, 917 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 126, 146, 464, 542, 551, 560, 712, 977 |
| HpySE526I | ACGT | 2 cut(s) | 581, 956 |
| Hsp92II | CATG | 3 cut(s) | 508, 764, 875 |
| HspAI | GCGC | 4 cut(s) | 42, 147, 423, 704 |
| Kzo9I | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| LguI | GCTCTTC | 3 cut(s) | 204, 273, 465 |
| LmnI | GCTCC | 2 cut(s) | 200, 798 |
| Lsp1109I | GCAGC | 1 cut(s) | 541 |
| LweI | GCATC | 6 cut(s) | 480, 523, 605, 841, 1041, 1093 |
| MaeI | CTAG | 3 cut(s) | 180, 731, 857 |
| MaeII | ACGT | 2 cut(s) | 581, 956 |
| MaeIII | GTNAC | 3 cut(s) | 449, 844, 1007 |
| MalI | GATC | 5 cut(s) | 380, 484, 808, 826, 861 |
| MboI | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| MboII | GAAGA | 7 cut(s) | 12, 15, 176, 221, 260, 452, 561 |
| MfeI | CAATTG | 1 cut(s) | 558 |
| MflI | RGATCY | 1 cut(s) | 859 |
| MhlI | GDGCHC | 2 cut(s) | 547, 740 |
| MluCI | AATT | 4 cut(s) | 558, 784, 828, 1073 |
| MlyI | GAGTC | 4 cut(s) | 53, 117, 630, 833 |
| MmeI | TCCRAC | 1 cut(s) | 178 |
| MnlI | CCTC | 4 cut(s) | 25, 28, 47, 659 |
| MseI | TTAA | 2 cut(s) | 1028, 1077 |
| MspCI | CTTAAG | 1 cut(s) | 1027 |
| MspR9I | CCNGG | 1 cut(s) | 1016 |
| MunI | CAATTG | 1 cut(s) | 558 |
| Mva1269I | GAATGC | 1 cut(s) | 425 |
| MvaI | CCWGG | 1 cut(s) | 1016 |
| MvnI | CGCG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 126, 146, 464, 542, 551, 560, 712, 977 |
| NdeI | CATATG | 1 cut(s) | 352 |
| NdeII | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| NlaIII | CATG | 3 cut(s) | 508, 764, 875 |
| NlaIV | GGNNCC | 1 cut(s) | 610 |
| NsbI | TGCGCA | 1 cut(s) | 424 |
| PagI | TCATGA | 1 cut(s) | 871 |
| PaqCI | CACCTGC | 1 cut(s) | 904 |
| PciSI | GCTCTTC | 3 cut(s) | 204, 273, 465 |
| PctI | GAATGC | 1 cut(s) | 425 |
| PfeI | GAWTC | 2 cut(s) | 107, 922 |
| PfoI | TCCNGGA | 1 cut(s) | 1014 |
| PkrI | GCNGC | 1 cut(s) | 556 |
| PleI | GAGTC | 4 cut(s) | 53, 117, 629, 833 |
| PpsI | GAGTC | 4 cut(s) | 53, 117, 629, 833 |
| Psp6I | CCWGG | 1 cut(s) | 1014 |
| PspGI | CCWGG | 1 cut(s) | 1014 |
| PspN4I | GGNNCC | 1 cut(s) | 610 |
| PspPI | GGNCC | 2 cut(s) | 508, 978 |
| PstI | CTGCAG | 1 cut(s) | 901 |
| PstNI | CAGNNNCTG | 1 cut(s) | 126 |
| PsuI | RGATCY | 1 cut(s) | 859 |
| RsaI | GTAC | 3 cut(s) | 584, 879, 1022 |
| RsaNI | GTAC | 3 cut(s) | 583, 878, 1021 |
| SapI | GCTCTTC | 3 cut(s) | 204, 273, 465 |
| SaqAI | TTAA | 2 cut(s) | 1028, 1077 |
| SatI | GCNGC | 1 cut(s) | 555 |
| Sau3AI | GATC | 5 cut(s) | 378, 482, 806, 824, 859 |
| Sau96I | GGNCC | 2 cut(s) | 508, 978 |
| SbfI | CCTGCAGG | 1 cut(s) | 901 |
| SchI | GAGTC | 4 cut(s) | 53, 117, 630, 833 |
| ScrFI | CCNGG | 1 cut(s) | 1016 |
| SdaI | CCTGCAGG | 1 cut(s) | 901 |
| SduI | GDGCHC | 2 cut(s) | 547, 740 |
| SfaNI | GCATC | 6 cut(s) | 480, 523, 605, 841, 1041, 1093 |
| SfcI | CTRYAG | 1 cut(s) | 897 |
| SinI | GGWCC | 1 cut(s) | 508 |
| SmlI | CTYRAG | 1 cut(s) | 1027 |
| SmoI | CTYRAG | 1 cut(s) | 1027 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 901 |
| Sse9I | AATT | 4 cut(s) | 558, 784, 828, 1073 |
| SsiI | CCGC | 1 cut(s) | 227 |
| SspMI | CTAG | 3 cut(s) | 180, 731, 857 |
| StyD4I | CCNGG | 1 cut(s) | 1014 |
| TaaI | ACNGT | 1 cut(s) | 400 |
| TaiI | ACGT | 2 cut(s) | 584, 959 |
| TaqI | TCGA | 2 cut(s) | 105, 271 |
| TasI | AATT | 4 cut(s) | 558, 784, 828, 1073 |
| TatI | WGTACW | 2 cut(s) | 877, 1020 |
| TfiI | GAWTC | 2 cut(s) | 107, 922 |
| Tru1I | TTAA | 2 cut(s) | 1028, 1077 |
| Tru9I | TTAA | 2 cut(s) | 1028, 1077 |
| TscAI | CASTG | 2 cut(s) | 492, 924 |
| TseI | GCWGC | 1 cut(s) | 554 |
| TspDTI | ATGAA | 4 cut(s) | 147, 326, 735, 749 |
| TspRI | CASTG | 2 cut(s) | 492, 924 |
| Vha464I | CTTAAG | 1 cut(s) | 1027 |
| VpaK11BI | GGWCC | 1 cut(s) | 508 |
| XapI | RAATTY | 1 cut(s) | 1073 |
| XspI | CTAG | 3 cut(s) | 180, 731, 857 |