Domain of unknown function (DUF4283)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1397 |
| AarI | CACCTGC | 2 cut(s) | 442, 1615 |
| Acc36I | ACCTGC | 2 cut(s) | 442, 1615 |
| Acc65I | GGTACC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 1 cut(s) | 405 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1388 |
| AccI | GTMKAC | 3 cut(s) | 524, 1161, 1841 |
| AciI | CCGC | 8 cut(s) | 83, 92, 409, 425, 959, 1122, 1823, 1875 |
| AclI | AACGTT | 1 cut(s) | 157 |
| AclWI | GGATC | 4 cut(s) | 329, 1810, 1820, 1833 |
| AcoI | YGGCCR | 2 cut(s) | 640, 1530 |
| AcsI | RAATTY | 3 cut(s) | 270, 384, 614 |
| AcuI | CTGAAG | 1 cut(s) | 1680 |
| AcyI | GRCGYC | 1 cut(s) | 151 |
| AfaI | GTAC | 3 cut(s) | 396, 407, 826 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 73, 235, 572, 1083, 1388 |
| AflIII | ACRYGT | 1 cut(s) | 1723 |
| AgsI | TTSAA | 7 cut(s) | 114, 595, 684, 1521, 1633, 1685, 1721 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1608 |
| AjiI | CACGTC | 1 cut(s) | 1839 |
| AjnI | CCWGG | 3 cut(s) | 621, 1101, 1200 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 215, 247, 525, 557 |
| AluBI | AGCT | 3 cut(s) | 343, 1197, 1490 |
| AluI | AGCT | 3 cut(s) | 343, 1197, 1490 |
| Alw26I | GTCTC | 6 cut(s) | 969, 1001, 1426, 1595, 1616, 1804 |
| AlwI | GGATC | 4 cut(s) | 329, 1810, 1820, 1833 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1066, 1388 |
| AoxI | GGCC | 7 cut(s) | 640, 915, 1057, 1258, 1377, 1530, 1563 |
| ApeKI | GCWGC | 3 cut(s) | 1066, 1098, 1655 |
| ApoI | RAATTY | 3 cut(s) | 270, 384, 614 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1680 |
| Asp718I | GGTACC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 1325 |
| AspS9I | GGNCC | 5 cut(s) | 37, 64, 899, 1057, 1378 |
| AsuC2I | CCSGG | 2 cut(s) | 567, 1885 |
| AsuHPI | GGTGA | 2 cut(s) | 214, 958 |
| AsuII | TTCGAA | 1 cut(s) | 1729 |
| AvaII | GGWCC | 3 cut(s) | 37, 64, 899 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 86, 119, 389, 422, 966, 999 |
| BalI | TGGCCA | 2 cut(s) | 642, 1532 |
| BamHI | GGATCC | 1 cut(s) | 1825 |
| BanI | GGYRCC | 1 cut(s) | 405 |
| BbvCI | CCTCAGC | 2 cut(s) | 417, 726 |
| BbvI | GCAGC | 3 cut(s) | 1053, 1110, 1642 |
| BceAI | ACGGC | 4 cut(s) | 930, 1245, 1336, 1550 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 538, 572 |
| BciT130I | CCWGG | 3 cut(s) | 623, 1103, 1202 |
| BciVI | GTATCC | 1 cut(s) | 1911 |
| BcnI | CCSGG | 2 cut(s) | 567, 1885 |
| BcoDI | GTCTC | 6 cut(s) | 969, 1001, 1426, 1595, 1616, 1804 |
| BfaI | CTAG | 2 cut(s) | 78, 819 |
| BfmI | CTRYAG | 1 cut(s) | 1158 |
| BfuAI | ACCTGC | 2 cut(s) | 442, 1615 |
| BfuI | GTATCC | 1 cut(s) | 1911 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1385 |
| BglII | AGATCT | 1 cut(s) | 1699 |
| BisI | GCNGC | 4 cut(s) | 93, 1067, 1099, 1656 |
| BlsI | GCNGC | 4 cut(s) | 94, 1068, 1100, 1657 |
| Bme1390I | CCNGG | 5 cut(s) | 567, 623, 1103, 1202, 1885 |
| Bme18I | GGWCC | 3 cut(s) | 37, 64, 899 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1608 |
| BmgBI | CACGTC | 1 cut(s) | 1839 |
| BmgT120I | GGNCC | 5 cut(s) | 37, 64, 899, 1057, 1378 |
| BmrFI | CCNGG | 5 cut(s) | 567, 623, 1103, 1202, 1885 |
| BmrI | ACTGGG | 1 cut(s) | 660 |
| BmsI | GCATC | 4 cut(s) | 642, 793, 1167, 1777 |
| BmuI | ACTGGG | 1 cut(s) | 660 |
| BoxI | GACNNNNGTC | 1 cut(s) | 35 |
| BpmI | CTGGAG | 2 cut(s) | 346, 951 |
| Bpu10I | CCTNAGC | 2 cut(s) | 417, 726 |
| Bpu14I | TTCGAA | 1 cut(s) | 1729 |
| BpuEI | CTTGAG | 1 cut(s) | 160 |
| BpuMI | CCSGG | 2 cut(s) | 567, 1885 |
| Bsa29I | ATCGAT | 1 cut(s) | 558 |
| BsaBI | GATNNNNATC | 1 cut(s) | 320 |
| BsaHI | GRCGYC | 1 cut(s) | 151 |
| BsaI | GGTCTC | 1 cut(s) | 1001 |
| BsaJI | CCNNGG | 4 cut(s) | 287, 1039, 1201, 1818 |
| BsaWI | WCCGGW | 2 cut(s) | 402, 1852 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 525, 555, 1332, 1362, 1575, 1605, 1789, 1819 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 73, 235, 572, 1083, 1388 |
| Bse118I | RCCGGY | 1 cut(s) | 943 |
| Bse1I | ACTGG | 5 cut(s) | 655, 769, 1060, 1741, 1804 |
| Bse3DI | GCAATG | 2 cut(s) | 418, 1790 |
| Bse8I | GATNNNNATC | 1 cut(s) | 320 |
| BseBI | CCWGG | 3 cut(s) | 623, 1103, 1202 |
| BseCI | ATCGAT | 1 cut(s) | 558 |
| BseDI | CCNNGG | 4 cut(s) | 287, 1039, 1201, 1818 |
| BseJI | GATNNNNATC | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 73, 235, 572, 1083, 1388 |
| BseMI | GCAATG | 2 cut(s) | 418, 1790 |
| BseMII | CTCAG | 3 cut(s) | 408, 517, 717 |
| BseNI | ACTGG | 5 cut(s) | 655, 769, 1060, 1741, 1804 |
| BseRI | GAGGAG | 4 cut(s) | 350, 707, 949, 1316 |
| BseXI | GCAGC | 3 cut(s) | 1053, 1110, 1642 |
| BseYI | CCCAGC | 2 cut(s) | 26, 1865 |
| BsgI | GTGCAG | 1 cut(s) | 1643 |
| BshFI | GGCC | 7 cut(s) | 642, 917, 1059, 1260, 1379, 1532, 1565 |
| BshNI | GGYRCC | 1 cut(s) | 405 |
| BshVI | ATCGAT | 1 cut(s) | 558 |
| BsiSI | CCGG | 7 cut(s) | 67, 403, 566, 611, 944, 1853, 1885 |
| BslFI | GGGAC | 5 cut(s) | 43, 305, 497, 912, 1492 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 73, 235, 572, 1083, 1388 |
| BsmAI | GTCTC | 6 cut(s) | 969, 1001, 1426, 1595, 1616, 1804 |
| BsmFI | GGGAC | 5 cut(s) | 43, 305, 497, 912, 1492 |
| BsmI | GAATGC | 2 cut(s) | 109, 549 |
| BsnI | GGCC | 7 cut(s) | 642, 917, 1059, 1260, 1379, 1532, 1565 |
| Bso31I | GGTCTC | 1 cut(s) | 1001 |
| Bsp119I | TTCGAA | 1 cut(s) | 1729 |
| Bsp143I | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| Bsp19I | CCATGG | 1 cut(s) | 1039 |
| BspACI | CCGC | 8 cut(s) | 83, 92, 409, 425, 959, 1122, 1823, 1875 |
| BspANI | GGCC | 7 cut(s) | 642, 917, 1059, 1260, 1379, 1532, 1565 |
| BspCNI | CTCAG | 3 cut(s) | 409, 516, 718 |
| BspDI | ATCGAT | 1 cut(s) | 558 |
| BspMI | ACCTGC | 2 cut(s) | 442, 1615 |
| BspPI | GGATC | 4 cut(s) | 329, 1810, 1820, 1833 |
| BspT104I | TTCGAA | 1 cut(s) | 1729 |
| BspT107I | GGYRCC | 1 cut(s) | 405 |
| BspTNI | GGTCTC | 1 cut(s) | 1001 |
| BsrDI | GCAATG | 2 cut(s) | 418, 1790 |
| BsrFI | RCCGGY | 1 cut(s) | 943 |
| BsrI | ACTGG | 5 cut(s) | 655, 769, 1060, 1741, 1804 |
| BssAI | RCCGGY | 1 cut(s) | 943 |
| BssECI | CCNNGG | 4 cut(s) | 287, 1039, 1201, 1818 |
| BssMI | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| BssNI | GRCGYC | 1 cut(s) | 151 |
| BssT1I | CCWWGG | 3 cut(s) | 287, 1039, 1818 |
| Bst2UI | CCWGG | 3 cut(s) | 623, 1103, 1202 |
| Bst4CI | ACNGT | 3 cut(s) | 183, 488, 537 |
| Bst6I | CTCTTC | 5 cut(s) | 11, 176, 925, 1582, 1671 |
| BstACI | GRCGYC | 1 cut(s) | 151 |
| BstBI | TTCGAA | 1 cut(s) | 1729 |
| BstC8I | GCNNGC | 2 cut(s) | 1258, 1390 |
| BstDEI | CTNAG | 5 cut(s) | 57, 417, 503, 719, 726 |
| BstDSI | CCRYGG | 1 cut(s) | 1039 |
| BstEII | GGTNACC | 1 cut(s) | 878 |
| BstHHI | GCGC | 1 cut(s) | 1325 |
| BstKTI | GATC | 7 cut(s) | 169, 324, 736, 1702, 1805, 1828, 1908 |
| BstMAI | GTCTC | 6 cut(s) | 969, 1001, 1426, 1595, 1616, 1804 |
| BstMBI | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 89, 422, 639, 1203, 1385 |
| BstNI | CCWGG | 3 cut(s) | 623, 1103, 1202 |
| BstNSI | RCATGY | 1 cut(s) | 1727 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 35 |
| BstPI | GGTNACC | 1 cut(s) | 878 |
| BstSCI | CCNGG | 5 cut(s) | 565, 621, 1101, 1200, 1883 |
| BstSFI | CTRYAG | 1 cut(s) | 1158 |
| BstV1I | GCAGC | 3 cut(s) | 1053, 1110, 1642 |
| BstX2I | RGATCY | 4 cut(s) | 321, 1699, 1802, 1825 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 629, 650, 1540 |
| BstYI | RGATCY | 4 cut(s) | 321, 1699, 1802, 1825 |
| Bsu15I | ATCGAT | 1 cut(s) | 558 |
| BsuI | GTATCC | 1 cut(s) | 1911 |
| BsuRI | GGCC | 7 cut(s) | 642, 917, 1059, 1260, 1379, 1532, 1565 |
| BsuTUI | ATCGAT | 1 cut(s) | 558 |
| BtgI | CCRYGG | 1 cut(s) | 1039 |
| BtgZI | GCGATG | 1 cut(s) | 1190 |
| BtrI | CACGTC | 1 cut(s) | 1839 |
| BtsIMutI | CAGTG | 1 cut(s) | 217 |
| BveI | ACCTGC | 2 cut(s) | 442, 1615 |
| Cac8I | GCNNGC | 2 cut(s) | 1258, 1390 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1066, 1388 |
| CfoI | GCGC | 1 cut(s) | 1325 |
| Cfr10I | RCCGGY | 1 cut(s) | 943 |
| Cfr13I | GGNCC | 5 cut(s) | 37, 64, 899, 1057, 1378 |
| ClaI | ATCGAT | 1 cut(s) | 558 |
| CseI | GACGC | 1 cut(s) | 159 |
| Csp6I | GTAC | 3 cut(s) | 395, 406, 825 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 802, 837, 1509, 1544 |
| CviAII | CATG | 4 cut(s) | 389, 927, 1040, 1724 |
| CviQI | GTAC | 3 cut(s) | 395, 406, 825 |
| DdeI | CTNAG | 5 cut(s) | 57, 417, 503, 719, 726 |
| DpnI | GATC | 7 cut(s) | 168, 323, 735, 1701, 1804, 1827, 1907 |
| DpnII | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1608 |
| EaeI | YGGCCR | 2 cut(s) | 640, 1530 |
| Eam1104I | CTCTTC | 5 cut(s) | 11, 176, 925, 1582, 1671 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1608 |
| EarI | CTCTTC | 5 cut(s) | 11, 176, 925, 1582, 1671 |
| EciI | GGCGGA | 2 cut(s) | 1137, 1838 |
| Eco130I | CCWWGG | 3 cut(s) | 287, 1039, 1818 |
| Eco31I | GGTCTC | 1 cut(s) | 1001 |
| Eco47I | GGWCC | 3 cut(s) | 37, 64, 899 |
| Eco57I | CTGAAG | 1 cut(s) | 1680 |
| Eco91I | GGTNACC | 1 cut(s) | 878 |
| EcoO109I | RGGNCCY | 2 cut(s) | 899, 1378 |
| EcoO65I | GGTNACC | 1 cut(s) | 878 |
| EcoRII | CCWGG | 3 cut(s) | 621, 1101, 1200 |
| EcoT14I | CCWWGG | 3 cut(s) | 287, 1039, 1818 |
| ErhI | CCWWGG | 3 cut(s) | 287, 1039, 1818 |
| FaeI | CATG | 4 cut(s) | 392, 930, 1043, 1727 |
| FaqI | GGGAC | 5 cut(s) | 43, 305, 497, 912, 1492 |
| FatI | CATG | 4 cut(s) | 388, 926, 1039, 1723 |
| FauNDI | CATATG | 1 cut(s) | 519 |
| FblI | GTMKAC | 3 cut(s) | 524, 1161, 1841 |
| Fnu4HI | GCNGC | 4 cut(s) | 93, 1067, 1099, 1656 |
| Fsp4HI | GCNGC | 4 cut(s) | 93, 1067, 1099, 1656 |
| FspBI | CTAG | 2 cut(s) | 78, 819 |
| GlaI | GCGC | 1 cut(s) | 1324 |
| GluI | GCNGC | 4 cut(s) | 93, 1067, 1099, 1656 |
| GsaI | CCCAGC | 2 cut(s) | 30, 1869 |
| GsuI | CTGGAG | 2 cut(s) | 346, 951 |
| HaeIII | GGCC | 7 cut(s) | 642, 917, 1059, 1260, 1379, 1532, 1565 |
| HapII | CCGG | 7 cut(s) | 67, 403, 566, 611, 944, 1853, 1885 |
| HgaI | GACGC | 1 cut(s) | 159 |
| HhaI | GCGC | 1 cut(s) | 1325 |
| Hin1I | GRCGYC | 1 cut(s) | 151 |
| Hin1II | CATG | 4 cut(s) | 392, 930, 1043, 1727 |
| Hin6I | GCGC | 1 cut(s) | 1323 |
| HinP1I | GCGC | 1 cut(s) | 1323 |
| HincII | GTYRAC | 2 cut(s) | 525, 1842 |
| HindII | GTYRAC | 2 cut(s) | 525, 1842 |
| HindIII | AAGCTT | 1 cut(s) | 341 |
| HinfI | GANTC | 7 cut(s) | 53, 1163, 1633, 1681, 1717, 1777, 1892 |
| HpaII | CCGG | 7 cut(s) | 67, 403, 566, 611, 944, 1853, 1885 |
| HphI | GGTGA | 2 cut(s) | 214, 958 |
| Hpy166II | GTNNAC | 6 cut(s) | 395, 525, 746, 1162, 1781, 1842 |
| Hpy188I | TCNGA | 6 cut(s) | 1692, 1699, 1809, 1891, 1905, 1910 |
| Hpy188III | TCNNGA | 4 cut(s) | 177, 325, 968, 1772 |
| Hpy8I | GTNNAC | 6 cut(s) | 395, 525, 746, 1162, 1781, 1842 |
| Hpy99I | CGWCG | 5 cut(s) | 153, 529, 532, 549, 1843 |
| HpyAV | CCTTC | 9 cut(s) | 489, 836, 1018, 1104, 1208, 1264, 1369, 1564, 1655 |
| HpyCH4III | ACNGT | 3 cut(s) | 183, 488, 537 |
| HpyCH4IV | ACGT | 2 cut(s) | 157, 1838 |
| HpyCH4V | TGCA | 4 cut(s) | 382, 930, 1069, 1624 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 89, 422, 639, 1203, 1385 |
| HpyF3I | CTNAG | 5 cut(s) | 57, 417, 503, 719, 726 |
| HpySE526I | ACGT | 2 cut(s) | 157, 1838 |
| Hsp92I | GRCGYC | 1 cut(s) | 151 |
| Hsp92II | CATG | 4 cut(s) | 392, 930, 1043, 1727 |
| HspAI | GCGC | 1 cut(s) | 1323 |
| KpnI | GGTACC | 1 cut(s) | 409 |
| Kzo9I | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| LmnI | GCTCC | 4 cut(s) | 283, 546, 961, 1031 |
| Lsp1109I | GCAGC | 3 cut(s) | 1053, 1110, 1642 |
| LweI | GCATC | 4 cut(s) | 642, 793, 1167, 1777 |
| MaeI | CTAG | 2 cut(s) | 78, 819 |
| MaeII | ACGT | 2 cut(s) | 157, 1838 |
| MaeIII | GTNAC | 6 cut(s) | 202, 659, 809, 878, 1276, 1316 |
| MalI | GATC | 7 cut(s) | 168, 323, 735, 1701, 1804, 1827, 1907 |
| MboI | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| MboII | GAAGA | 9 cut(s) | 28, 163, 440, 786, 912, 1251, 1279, 1599, 1688 |
| MfeI | CAATTG | 1 cut(s) | 114 |
| MflI | RGATCY | 4 cut(s) | 321, 1699, 1802, 1825 |
| MlsI | TGGCCA | 2 cut(s) | 642, 1532 |
| MluNI | TGGCCA | 2 cut(s) | 642, 1532 |
| MlyI | GAGTC | 4 cut(s) | 62, 1157, 1786, 1886 |
| MmeI | TCCRAC | 1 cut(s) | 671 |
| Mox20I | TGGCCA | 2 cut(s) | 642, 1532 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1680 |
| MscI | TGGCCA | 2 cut(s) | 642, 1532 |
| MseI | TTAA | 9 cut(s) | 308, 713, 1047, 1247, 1350, 1428, 1548, 1704, 1764 |
| MslI | CAYNNNNRTG | 1 cut(s) | 995 |
| Msp20I | TGGCCA | 2 cut(s) | 642, 1532 |
| MspI | CCGG | 7 cut(s) | 67, 403, 566, 611, 944, 1853, 1885 |
| MspR9I | CCNGG | 5 cut(s) | 567, 623, 1103, 1202, 1885 |
| MunI | CAATTG | 1 cut(s) | 114 |
| Mva1269I | GAATGC | 2 cut(s) | 109, 549 |
| MvaI | CCWGG | 3 cut(s) | 623, 1103, 1202 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 89, 422, 639, 1203, 1385 |
| NciI | CCSGG | 2 cut(s) | 567, 1885 |
| NcoI | CCATGG | 1 cut(s) | 1039 |
| NdeI | CATATG | 1 cut(s) | 519 |
| NdeII | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| NlaIII | CATG | 4 cut(s) | 392, 930, 1043, 1727 |
| NmeAIII | GCCGAG | 1 cut(s) | 1874 |
| NmuCI | GTSAC | 4 cut(s) | 202, 659, 809, 1316 |
| NspI | RCATGY | 1 cut(s) | 1727 |
| NspV | TTCGAA | 1 cut(s) | 1729 |
| PaqCI | CACCTGC | 2 cut(s) | 442, 1615 |
| PciI | ACATGT | 1 cut(s) | 1723 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 145, 154, 533, 1901 |
| PctI | GAATGC | 2 cut(s) | 109, 549 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1680 |
| PfeI | GAWTC | 3 cut(s) | 1633, 1681, 1717 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1388 |
| PfoI | TCCNGGA | 1 cut(s) | 565 |
| PkrI | GCNGC | 4 cut(s) | 94, 1068, 1100, 1657 |
| PleI | GAGTC | 4 cut(s) | 61, 1157, 1785, 1886 |
| PpsI | GAGTC | 4 cut(s) | 61, 1157, 1785, 1886 |
| PpuMI | RGGWCCY | 1 cut(s) | 899 |
| PscI | ACATGT | 1 cut(s) | 1723 |
| PshAI | GACNNNNGTC | 1 cut(s) | 35 |
| PsiI | TTATAA | 1 cut(s) | 1397 |
| Psp1406I | AACGTT | 1 cut(s) | 157 |
| Psp5II | RGGWCCY | 1 cut(s) | 899 |
| Psp6I | CCWGG | 3 cut(s) | 621, 1101, 1200 |
| PspEI | GGTNACC | 1 cut(s) | 878 |
| PspFI | CCCAGC | 2 cut(s) | 26, 1865 |
| PspGI | CCWGG | 3 cut(s) | 621, 1101, 1200 |
| PspPI | GGNCC | 5 cut(s) | 37, 64, 899, 1057, 1378 |
| PspPPI | RGGWCCY | 1 cut(s) | 899 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1066, 1388 |
| PsuI | RGATCY | 4 cut(s) | 321, 1699, 1802, 1825 |
| RsaI | GTAC | 3 cut(s) | 396, 407, 826 |
| RsaNI | GTAC | 3 cut(s) | 395, 406, 825 |
| RseI | CAYNNNNRTG | 1 cut(s) | 995 |
| SalI | GTCGAC | 2 cut(s) | 523, 1840 |
| SaqAI | TTAA | 9 cut(s) | 308, 713, 1047, 1247, 1350, 1428, 1548, 1704, 1764 |
| SatI | GCNGC | 4 cut(s) | 93, 1067, 1099, 1656 |
| Sau3AI | GATC | 7 cut(s) | 166, 321, 733, 1699, 1802, 1825, 1905 |
| Sau96I | GGNCC | 5 cut(s) | 37, 64, 899, 1057, 1378 |
| SchI | GAGTC | 4 cut(s) | 62, 1157, 1786, 1886 |
| ScrFI | CCNGG | 5 cut(s) | 567, 623, 1103, 1202, 1885 |
| SfaNI | GCATC | 4 cut(s) | 642, 793, 1167, 1777 |
| SfcI | CTRYAG | 1 cut(s) | 1158 |
| SfuI | TTCGAA | 1 cut(s) | 1729 |
| SinI | GGWCC | 3 cut(s) | 37, 64, 899 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 995 |
| SmlI | CTYRAG | 1 cut(s) | 175 |
| SmoI | CTYRAG | 1 cut(s) | 175 |
| SsiI | CCGC | 8 cut(s) | 83, 92, 409, 425, 959, 1122, 1823, 1875 |
| SspMI | CTAG | 2 cut(s) | 78, 819 |
| StyD4I | CCNGG | 5 cut(s) | 565, 621, 1101, 1200, 1883 |
| StyI | CCWWGG | 3 cut(s) | 287, 1039, 1818 |
| TaaI | ACNGT | 3 cut(s) | 183, 488, 537 |
| TaiI | ACGT | 2 cut(s) | 160, 1841 |
| TaqI | TCGA | 6 cut(s) | 148, 524, 558, 1237, 1729, 1841 |
| TauI | GCSGC | 1 cut(s) | 95 |
| TfiI | GAWTC | 3 cut(s) | 1633, 1681, 1717 |
| Tru1I | TTAA | 9 cut(s) | 308, 713, 1047, 1247, 1350, 1428, 1548, 1704, 1764 |
| Tru9I | TTAA | 9 cut(s) | 308, 713, 1047, 1247, 1350, 1428, 1548, 1704, 1764 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TseFI | GTSAC | 4 cut(s) | 202, 659, 809, 1316 |
| TseI | GCWGC | 3 cut(s) | 1066, 1098, 1655 |
| Tsp45I | GTSAC | 4 cut(s) | 202, 659, 809, 1316 |
| TspDTI | ATGAA | 2 cut(s) | 151, 377 |
| TspGWI | ACGGA | 3 cut(s) | 266, 533, 545 |
| TspRI | CASTG | 1 cut(s) | 217 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1388 |
| VpaK11BI | GGWCC | 3 cut(s) | 37, 64, 899 |
| XapI | RAATTY | 3 cut(s) | 270, 384, 614 |
| XceI | RCATGY | 1 cut(s) | 1727 |
| XmiI | GTMKAC | 3 cut(s) | 524, 1161, 1841 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1680 |
| XspI | CTAG | 2 cut(s) | 78, 819 |