ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 37 - 106 | 4.2e-12 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 103, 1071 |
| AccI | GTMKAC | 1 cut(s) | 865 |
| AccII | CGCG | 1 cut(s) | 571 |
| AciI | CCGC | 7 cut(s) | 103, 569, 571, 766, 1022, 1071, 1327 |
| AclI | AACGTT | 1 cut(s) | 1027 |
| AclWI | GGATC | 7 cut(s) | 335, 348, 560, 573, 687, 1311, 1324 |
| AcsI | RAATTY | 1 cut(s) | 197 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfaI | GTAC | 3 cut(s) | 273, 996, 1048 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 329, 1145, 1178, 1298, 1299, 1326 |
| AflIII | ACRYGT | 1 cut(s) | 1252 |
| AgeI | ACCGGT | 1 cut(s) | 997 |
| AgsI | TTSAA | 3 cut(s) | 247, 842, 964 |
| AhlI | ACTAGT | 1 cut(s) | 1004 |
| AjiI | CACGTC | 1 cut(s) | 713 |
| AluBI | AGCT | 3 cut(s) | 38, 526, 610 |
| AluI | AGCT | 3 cut(s) | 38, 526, 610 |
| Alw21I | GWGCWC | 1 cut(s) | 1214 |
| Alw26I | GTCTC | 1 cut(s) | 962 |
| AlwI | GGATC | 7 cut(s) | 335, 348, 560, 573, 687, 1311, 1324 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 917 |
| Ama87I | CYCGRG | 2 cut(s) | 344, 529 |
| AoxI | GGCC | 1 cut(s) | 676 |
| ApeKI | GCWGC | 1 cut(s) | 394 |
| ApoI | RAATTY | 1 cut(s) | 197 |
| AsiGI | ACCGGT | 1 cut(s) | 997 |
| AspA2I | CCTAGG | 1 cut(s) | 746 |
| AspLEI | GCGC | 1 cut(s) | 1286 |
| AspS9I | GGNCC | 3 cut(s) | 676, 726, 1329 |
| AsuC2I | CCSGG | 3 cut(s) | 345, 346, 401 |
| AvaI | CYCGRG | 2 cut(s) | 344, 529 |
| AvaII | GGWCC | 2 cut(s) | 726, 1329 |
| AvrII | CCTAGG | 1 cut(s) | 746 |
| AxyI | CCTNAGG | 1 cut(s) | 1140 |
| BamHI | GGATCC | 3 cut(s) | 340, 565, 1316 |
| BanII | GRGCYC | 1 cut(s) | 739 |
| BauI | CACGAG | 1 cut(s) | 113 |
| BbsI | GAAGAC | 3 cut(s) | 229, 264, 644 |
| Bbv12I | GWGCWC | 1 cut(s) | 1214 |
| BbvI | GCAGC | 1 cut(s) | 381 |
| BccI | CCATC | 4 cut(s) | 323, 331, 479, 1261 |
| BceAI | ACGGC | 1 cut(s) | 846 |
| BcnI | CCSGG | 3 cut(s) | 345, 346, 401 |
| BcoDI | GTCTC | 1 cut(s) | 962 |
| BcuI | ACTAGT | 1 cut(s) | 1004 |
| BfaI | CTAG | 5 cut(s) | 35, 267, 359, 747, 1005 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BglII | AGATCT | 1 cut(s) | 177 |
| BisI | GCNGC | 1 cut(s) | 395 |
| BlnI | CCTAGG | 1 cut(s) | 746 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 1 cut(s) | 396 |
| Bme1390I | CCNGG | 3 cut(s) | 345, 346, 401 |
| Bme18I | GGWCC | 2 cut(s) | 726, 1329 |
| BmeT110I | CYCGRG | 2 cut(s) | 344, 529 |
| BmgBI | CACGTC | 1 cut(s) | 713 |
| BmgT120I | GGNCC | 3 cut(s) | 676, 726, 1329 |
| BmiI | GGNNCC | 5 cut(s) | 321, 342, 567, 1318, 1331 |
| BmrFI | CCNGG | 3 cut(s) | 345, 346, 401 |
| BmsI | GCATC | 4 cut(s) | 917, 928, 1114, 1314 |
| BpiI | GAAGAC | 3 cut(s) | 229, 264, 644 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 504, 536 |
| BpmI | CTGGAG | 2 cut(s) | 80, 506 |
| Bpu10I | CCTNAGC | 1 cut(s) | 741 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BpuMI | CCSGG | 3 cut(s) | 345, 346, 401 |
| BsaBI | GATNNNNATC | 1 cut(s) | 54 |
| BsaJI | CCNNGG | 8 cut(s) | 189, 287, 344, 345, 399, 569, 722, 746 |
| BsaWI | WCCGGW | 2 cut(s) | 997, 1171 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 481, 511 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 329, 1145, 1178, 1298, 1299, 1326 |
| Bse118I | RCCGGY | 1 cut(s) | 997 |
| Bse1I | ACTGG | 4 cut(s) | 315, 679, 922, 1054 |
| Bse21I | CCTNAGG | 1 cut(s) | 1140 |
| Bse3DI | GCAATG | 2 cut(s) | 411, 977 |
| Bse8I | GATNNNNATC | 1 cut(s) | 54 |
| BseDI | CCNNGG | 8 cut(s) | 189, 287, 344, 345, 399, 569, 722, 746 |
| BseGI | GGATG | 9 cut(s) | 52, 339, 490, 513, 658, 837, 943, 1129, 1168 |
| BseJI | GATNNNNATC | 1 cut(s) | 54 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 329, 1145, 1178, 1298, 1299, 1326 |
| BseMI | GCAATG | 2 cut(s) | 411, 977 |
| BseMII | CTCAG | 3 cut(s) | 90, 732, 1109 |
| BseNI | ACTGG | 4 cut(s) | 315, 679, 922, 1054 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 1 cut(s) | 381 |
| Bsh1236I | CGCG | 1 cut(s) | 571 |
| BshFI | GGCC | 1 cut(s) | 678 |
| BshTI | ACCGGT | 1 cut(s) | 997 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1214 |
| BsiHKCI | CYCGRG | 2 cut(s) | 344, 529 |
| BsiSI | CCGG | 4 cut(s) | 345, 401, 998, 1172 |
| BslFI | GGGAC | 3 cut(s) | 587, 1275, 1315 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 329, 1145, 1178, 1298, 1299, 1326 |
| BsmAI | GTCTC | 1 cut(s) | 962 |
| BsmFI | GGGAC | 3 cut(s) | 587, 1275, 1315 |
| BsmI | GAATGC | 1 cut(s) | 561 |
| BsnI | GGCC | 1 cut(s) | 678 |
| BsoBI | CYCGRG | 2 cut(s) | 344, 529 |
| Bsp1286I | GDGCHC | 2 cut(s) | 739, 1214 |
| Bsp143I | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| Bsp19I | CCATGG | 1 cut(s) | 722 |
| BspACI | CCGC | 7 cut(s) | 103, 569, 571, 766, 1022, 1071, 1327 |
| BspANI | GGCC | 1 cut(s) | 678 |
| BspCNI | CTCAG | 3 cut(s) | 91, 733, 1108 |
| BspFNI | CGCG | 1 cut(s) | 571 |
| BspLI | GGNNCC | 5 cut(s) | 321, 342, 567, 1318, 1331 |
| BspPI | GGATC | 7 cut(s) | 335, 348, 560, 573, 687, 1311, 1324 |
| BsrBI | CCGCTC | 2 cut(s) | 103, 1071 |
| BsrDI | GCAATG | 2 cut(s) | 411, 977 |
| BsrFI | RCCGGY | 1 cut(s) | 997 |
| BsrI | ACTGG | 4 cut(s) | 315, 679, 922, 1054 |
| BssAI | RCCGGY | 1 cut(s) | 997 |
| BssECI | CCNNGG | 8 cut(s) | 189, 287, 344, 345, 399, 569, 722, 746 |
| BssMI | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| BssSI | CACGAG | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 4 cut(s) | 189, 287, 722, 746 |
| Bst2BI | CACGAG | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 2 cut(s) | 73, 597 |
| BstC8I | GCNNGC | 1 cut(s) | 1282 |
| BstDEI | CTNAG | 5 cut(s) | 99, 584, 741, 1095, 1140 |
| BstDSI | CCRYGG | 2 cut(s) | 569, 722 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| BstF5I | GGATG | 9 cut(s) | 52, 339, 490, 513, 658, 837, 943, 1129, 1168 |
| BstFNI | CGCG | 1 cut(s) | 571 |
| BstHHI | GCGC | 1 cut(s) | 1286 |
| BstKTI | GATC | 9 cut(s) | 58, 82, 180, 207, 343, 469, 568, 695, 1319 |
| BstMAI | GTCTC | 1 cut(s) | 962 |
| BstMBI | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 109, 171 |
| BstNSI | RCATGY | 2 cut(s) | 1047, 1256 |
| BstSCI | CCNGG | 3 cut(s) | 343, 344, 399 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstUI | CGCG | 1 cut(s) | 571 |
| BstV1I | GCAGC | 1 cut(s) | 381 |
| BstV2I | GAAGAC | 3 cut(s) | 229, 264, 644 |
| BstX2I | RGATCY | 4 cut(s) | 177, 340, 565, 1316 |
| BstYI | RGATCY | 4 cut(s) | 177, 340, 565, 1316 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1140 |
| BsuRI | GGCC | 1 cut(s) | 678 |
| BtgI | CCRYGG | 2 cut(s) | 569, 722 |
| BtrI | CACGTC | 1 cut(s) | 713 |
| BtsCI | GGATG | 9 cut(s) | 52, 339, 490, 513, 658, 837, 943, 1129, 1168 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 997 |
| Cac8I | GCNNGC | 1 cut(s) | 1282 |
| CaiI | CAGNNNCTG | 1 cut(s) | 917 |
| CfoI | GCGC | 1 cut(s) | 1286 |
| Cfr10I | RCCGGY | 1 cut(s) | 997 |
| Cfr13I | GGNCC | 3 cut(s) | 676, 726, 1329 |
| Cfr42I | CCGCGG | 1 cut(s) | 572 |
| Cfr9I | CCCGGG | 1 cut(s) | 344 |
| CseI | GACGC | 1 cut(s) | 171 |
| Csp6I | GTAC | 3 cut(s) | 272, 995, 1047 |
| CspAI | ACCGGT | 1 cut(s) | 997 |
| CviAII | CATG | 5 cut(s) | 613, 723, 730, 1044, 1253 |
| CviQI | GTAC | 3 cut(s) | 272, 995, 1047 |
| DdeI | CTNAG | 5 cut(s) | 99, 584, 741, 1095, 1140 |
| DpnI | GATC | 9 cut(s) | 57, 81, 179, 206, 342, 468, 567, 694, 1318 |
| DpnII | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| DraI | TTTAAA | 1 cut(s) | 459 |
| Eco130I | CCWWGG | 4 cut(s) | 189, 287, 722, 746 |
| Eco24I | GRGCYC | 1 cut(s) | 739 |
| Eco47I | GGWCC | 2 cut(s) | 726, 1329 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| Eco81I | CCTNAGG | 1 cut(s) | 1140 |
| Eco88I | CYCGRG | 2 cut(s) | 344, 529 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| EcoT14I | CCWWGG | 4 cut(s) | 189, 287, 722, 746 |
| EcoT38I | GRGCYC | 1 cut(s) | 739 |
| ErhI | CCWWGG | 4 cut(s) | 189, 287, 722, 746 |
| FaeI | CATG | 5 cut(s) | 616, 726, 733, 1047, 1256 |
| FaiI | YATR | 9 cut(s) | 170, 614, 627, 724, 731, 1045, 1151, 1232, 1254 |
| FaqI | GGGAC | 3 cut(s) | 587, 1275, 1315 |
| FatI | CATG | 5 cut(s) | 612, 722, 729, 1043, 1252 |
| FauI | CCCGC | 2 cut(s) | 564, 759 |
| FblI | GTMKAC | 1 cut(s) | 865 |
| Fnu4HI | GCNGC | 1 cut(s) | 395 |
| FokI | GGATG | 9 cut(s) | 59, 346, 497, 520, 665, 844, 950, 1136, 1155 |
| FriOI | GRGCYC | 1 cut(s) | 739 |
| Fsp4HI | GCNGC | 1 cut(s) | 395 |
| FspBI | CTAG | 5 cut(s) | 35, 267, 359, 747, 1005 |
| GlaI | GCGC | 1 cut(s) | 1285 |
| GluI | GCNGC | 1 cut(s) | 395 |
| GsuI | CTGGAG | 2 cut(s) | 80, 506 |
| HaeIII | GGCC | 1 cut(s) | 678 |
| HapII | CCGG | 4 cut(s) | 345, 401, 998, 1172 |
| HgaI | GACGC | 1 cut(s) | 171 |
| HhaI | GCGC | 1 cut(s) | 1286 |
| Hin1II | CATG | 5 cut(s) | 616, 726, 733, 1047, 1256 |
| Hin6I | GCGC | 1 cut(s) | 1284 |
| HinP1I | GCGC | 1 cut(s) | 1284 |
| HincII | GTYRAC | 4 cut(s) | 145, 186, 753, 866 |
| HindII | GTYRAC | 4 cut(s) | 145, 186, 753, 866 |
| HinfI | GANTC | 3 cut(s) | 152, 532, 1117 |
| HpaII | CCGG | 4 cut(s) | 345, 401, 998, 1172 |
| Hpy166II | GTNNAC | 7 cut(s) | 76, 145, 186, 536, 753, 866, 995 |
| Hpy188I | TCNGA | 9 cut(s) | 84, 161, 226, 253, 471, 787, 913, 1098, 1321 |
| Hpy188III | TCNNGA | 7 cut(s) | 44, 59, 359, 368, 376, 529, 1121 |
| Hpy8I | GTNNAC | 7 cut(s) | 76, 145, 186, 536, 753, 866, 995 |
| Hpy99I | CGWCG | 3 cut(s) | 33, 152, 867 |
| HpyAV | CCTTC | 7 cut(s) | 115, 133, 253, 596, 624, 1114, 1150 |
| HpyCH4III | ACNGT | 2 cut(s) | 73, 597 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 712, 1027 |
| HpyCH4V | TGCA | 8 cut(s) | 277, 559, 673, 908, 941, 982, 1127, 1153 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 109, 171 |
| HpyF3I | CTNAG | 5 cut(s) | 99, 584, 741, 1095, 1140 |
| HpySE526I | ACGT | 3 cut(s) | 147, 712, 1027 |
| Hsp92II | CATG | 5 cut(s) | 616, 726, 733, 1047, 1256 |
| HspAI | GCGC | 1 cut(s) | 1284 |
| KspI | CCGCGG | 1 cut(s) | 572 |
| Kzo9I | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| LmnI | GCTCC | 4 cut(s) | 769, 877, 1068, 1217 |
| Lsp1109I | GCAGC | 1 cut(s) | 381 |
| LweI | GCATC | 4 cut(s) | 917, 928, 1114, 1314 |
| MaeI | CTAG | 5 cut(s) | 35, 267, 359, 747, 1005 |
| MaeII | ACGT | 3 cut(s) | 147, 712, 1027 |
| MaeIII | GTNAC | 2 cut(s) | 681, 1000 |
| MalI | GATC | 9 cut(s) | 57, 81, 179, 206, 342, 468, 567, 694, 1318 |
| MbiI | CCGCTC | 2 cut(s) | 103, 1071 |
| MboI | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| MfeI | CAATTG | 1 cut(s) | 959 |
| MflI | RGATCY | 4 cut(s) | 177, 340, 565, 1316 |
| MhlI | GDGCHC | 2 cut(s) | 739, 1214 |
| MluCI | AATT | 3 cut(s) | 197, 871, 959 |
| MlyI | GAGTC | 1 cut(s) | 541 |
| MmeI | TCCRAC | 2 cut(s) | 543, 579 |
| MseI | TTAA | 6 cut(s) | 387, 458, 704, 870, 899, 1176 |
| MspA1I | CMGCKG | 1 cut(s) | 571 |
| MspI | CCGG | 4 cut(s) | 345, 401, 998, 1172 |
| MspR9I | CCNGG | 3 cut(s) | 345, 346, 401 |
| MunI | CAATTG | 1 cut(s) | 959 |
| Mva1269I | GAATGC | 1 cut(s) | 561 |
| MvnI | CGCG | 1 cut(s) | 571 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 109, 171 |
| NciI | CCSGG | 3 cut(s) | 345, 346, 401 |
| NcoI | CCATGG | 1 cut(s) | 722 |
| NdeII | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| NlaIII | CATG | 5 cut(s) | 616, 726, 733, 1047, 1256 |
| NlaIV | GGNNCC | 5 cut(s) | 321, 342, 567, 1318, 1331 |
| NspI | RCATGY | 2 cut(s) | 1047, 1256 |
| PaeR7I | CTCGAG | 1 cut(s) | 529 |
| PciI | ACATGT | 1 cut(s) | 1252 |
| PctI | GAATGC | 1 cut(s) | 561 |
| PfeI | GAWTC | 2 cut(s) | 152, 1117 |
| PinAI | ACCGGT | 1 cut(s) | 997 |
| PkrI | GCNGC | 1 cut(s) | 396 |
| PleI | GAGTC | 1 cut(s) | 540 |
| PpsI | GAGTC | 1 cut(s) | 540 |
| PscI | ACATGT | 1 cut(s) | 1252 |
| Psp1406I | AACGTT | 1 cut(s) | 1027 |
| PspN4I | GGNNCC | 5 cut(s) | 321, 342, 567, 1318, 1331 |
| PspPI | GGNCC | 3 cut(s) | 676, 726, 1329 |
| PstNI | CAGNNNCTG | 1 cut(s) | 917 |
| PsuI | RGATCY | 4 cut(s) | 177, 340, 565, 1316 |
| RsaI | GTAC | 3 cut(s) | 273, 996, 1048 |
| RsaNI | GTAC | 3 cut(s) | 272, 995, 1047 |
| SacII | CCGCGG | 1 cut(s) | 572 |
| SalI | GTCGAC | 1 cut(s) | 864 |
| SaqAI | TTAA | 6 cut(s) | 387, 458, 704, 870, 899, 1176 |
| SatI | GCNGC | 1 cut(s) | 395 |
| Sau3AI | GATC | 9 cut(s) | 55, 79, 177, 204, 340, 466, 565, 692, 1316 |
| Sau96I | GGNCC | 3 cut(s) | 676, 726, 1329 |
| SchI | GAGTC | 1 cut(s) | 541 |
| ScrFI | CCNGG | 3 cut(s) | 345, 346, 401 |
| SduI | GDGCHC | 2 cut(s) | 739, 1214 |
| SfaNI | GCATC | 4 cut(s) | 917, 928, 1114, 1314 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| Sfr274I | CTCGAG | 1 cut(s) | 529 |
| Sfr303I | CCGCGG | 1 cut(s) | 572 |
| SgrBI | CCGCGG | 1 cut(s) | 572 |
| SinI | GGWCC | 2 cut(s) | 726, 1329 |
| SlaI | CTCGAG | 1 cut(s) | 529 |
| SmaI | CCCGGG | 1 cut(s) | 346 |
| SmlI | CTYRAG | 1 cut(s) | 529 |
| SmoI | CTYRAG | 1 cut(s) | 529 |
| SpeI | ACTAGT | 1 cut(s) | 1004 |
| Sse9I | AATT | 3 cut(s) | 197, 871, 959 |
| SsiI | CCGC | 7 cut(s) | 103, 569, 571, 766, 1022, 1071, 1327 |
| SspMI | CTAG | 5 cut(s) | 35, 267, 359, 747, 1005 |
| StyD4I | CCNGG | 3 cut(s) | 343, 344, 399 |
| StyI | CCWWGG | 4 cut(s) | 189, 287, 722, 746 |
| TaaI | ACNGT | 2 cut(s) | 73, 597 |
| TaiI | ACGT | 3 cut(s) | 150, 715, 1030 |
| TaqI | TCGA | 6 cut(s) | 150, 203, 530, 799, 865, 1183 |
| TasI | AATT | 3 cut(s) | 197, 871, 959 |
| TatI | WGTACW | 1 cut(s) | 1046 |
| TfiI | GAWTC | 2 cut(s) | 152, 1117 |
| Tru1I | TTAA | 6 cut(s) | 387, 458, 704, 870, 899, 1176 |
| Tru9I | TTAA | 6 cut(s) | 387, 458, 704, 870, 899, 1176 |
| TscAI | CASTG | 2 cut(s) | 78, 997 |
| TseI | GCWGC | 1 cut(s) | 394 |
| TspGWI | ACGGA | 3 cut(s) | 428, 520, 1197 |
| TspMI | CCCGGG | 1 cut(s) | 344 |
| TspRI | CASTG | 2 cut(s) | 78, 997 |
| VpaK11BI | GGWCC | 2 cut(s) | 726, 1329 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1143 |
| XapI | RAATTY | 1 cut(s) | 197 |
| XbaI | TCTAGA | 1 cut(s) | 358 |
| XceI | RCATGY | 2 cut(s) | 1047, 1256 |
| XhoI | CTCGAG | 1 cut(s) | 529 |
| XmaI | CCCGGG | 1 cut(s) | 344 |
| XmaJI | CCTAGG | 1 cut(s) | 746 |
| XmiI | GTMKAC | 1 cut(s) | 865 |
| XspI | CTAG | 5 cut(s) | 35, 267, 359, 747, 1005 |