ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 183 |
| Acc36I | ACCTGC | 1 cut(s) | 183 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 285 |
| AccI | GTMKAC | 1 cut(s) | 323 |
| AccII | CGCG | 2 cut(s) | 915, 927 |
| AciI | CCGC | 9 cut(s) | 7, 17, 351, 427, 430, 509, 594, 915, 927 |
| AclWI | GGATC | 4 cut(s) | 224, 449, 673, 964 |
| AcoI | YGGCCR | 1 cut(s) | 156 |
| AcsI | RAATTY | 2 cut(s) | 1049, 1107 |
| AcvI | CACGTG | 1 cut(s) | 623 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 13, 165, 285, 707, 986, 1043, 1082 |
| AflIII | ACRYGT | 1 cut(s) | 117 |
| AgsI | TTSAA | 6 cut(s) | 248, 347, 477, 526, 607, 722 |
| AjiI | CACGTC | 1 cut(s) | 118 |
| AjnI | CCWGG | 4 cut(s) | 301, 353, 681, 1036 |
| AluBI | AGCT | 6 cut(s) | 127, 244, 313, 581, 817, 976 |
| AluI | AGCT | 6 cut(s) | 127, 244, 313, 581, 817, 976 |
| Alw26I | GTCTC | 1 cut(s) | 25 |
| AlwI | GGATC | 4 cut(s) | 224, 449, 673, 964 |
| AoxI | GGCC | 5 cut(s) | 156, 684, 709, 901, 1006 |
| ApeKI | GCWGC | 4 cut(s) | 127, 130, 241, 976 |
| ApoI | RAATTY | 2 cut(s) | 1049, 1107 |
| AseI | ATTAAT | 1 cut(s) | 464 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 790 |
| AspS9I | GGNCC | 5 cut(s) | 288, 668, 685, 710, 1007 |
| AsuHPI | GGTGA | 3 cut(s) | 71, 181, 401 |
| AvaII | GGWCC | 2 cut(s) | 288, 668 |
| BalI | TGGCCA | 1 cut(s) | 158 |
| BbrPI | CACGTG | 1 cut(s) | 623 |
| BbvI | GCAGC | 4 cut(s) | 114, 117, 253, 963 |
| BccI | CCATC | 8 cut(s) | 71, 158, 230, 370, 380, 491, 569, 851 |
| BciT130I | CCWGG | 4 cut(s) | 303, 355, 683, 1038 |
| BclI | TGATCA | 1 cut(s) | 171 |
| BcoDI | GTCTC | 1 cut(s) | 25 |
| BfaI | CTAG | 3 cut(s) | 206, 659, 762 |
| BfmI | CTRYAG | 2 cut(s) | 131, 705 |
| BfuAI | ACCTGC | 1 cut(s) | 183 |
| BglII | AGATCT | 1 cut(s) | 147 |
| BisI | GCNGC | 8 cut(s) | 128, 131, 242, 351, 428, 431, 928, 977 |
| BlsI | GCNGC | 8 cut(s) | 129, 132, 243, 352, 429, 432, 929, 978 |
| Bme1390I | CCNGG | 4 cut(s) | 303, 355, 683, 1038 |
| Bme18I | GGWCC | 2 cut(s) | 288, 668 |
| BmgBI | CACGTC | 1 cut(s) | 118 |
| BmgT120I | GGNCC | 5 cut(s) | 288, 668, 685, 710, 1007 |
| BmrFI | CCNGG | 4 cut(s) | 303, 355, 683, 1038 |
| BmrI | ACTGGG | 1 cut(s) | 682 |
| BmuI | ACTGGG | 1 cut(s) | 682 |
| BpuEI | CTTGAG | 1 cut(s) | 989 |
| Bsa29I | ATCGAT | 1 cut(s) | 228 |
| BsaAI | YACGTR | 2 cut(s) | 451, 623 |
| BsaBI | GATNNNNATC | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 4 cut(s) | 153, 302, 354, 904 |
| BsaWI | WCCGGW | 1 cut(s) | 52 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 13, 165, 285, 707, 986, 1043, 1082 |
| Bse1I | ACTGG | 3 cut(s) | 342, 688, 696 |
| Bse8I | GATNNNNATC | 1 cut(s) | 146 |
| BseBI | CCWGG | 4 cut(s) | 303, 355, 683, 1038 |
| BseCI | ATCGAT | 1 cut(s) | 228 |
| BseDI | CCNNGG | 4 cut(s) | 153, 302, 354, 904 |
| BseGI | GGATG | 4 cut(s) | 313, 391, 502, 862 |
| BseJI | GATNNNNATC | 1 cut(s) | 146 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 13, 165, 285, 707, 986, 1043, 1082 |
| BseMII | CTCAG | 4 cut(s) | 410, 509, 732, 759 |
| BseNI | ACTGG | 3 cut(s) | 342, 688, 696 |
| BseRI | GAGGAG | 2 cut(s) | 386, 877 |
| BseXI | GCAGC | 4 cut(s) | 114, 117, 253, 963 |
| BseYI | CCCAGC | 1 cut(s) | 317 |
| Bsh1236I | CGCG | 2 cut(s) | 915, 927 |
| Bsh1285I | CGRYCG | 1 cut(s) | 228 |
| BshFI | GGCC | 5 cut(s) | 158, 686, 711, 903, 1008 |
| BshVI | ATCGAT | 1 cut(s) | 228 |
| BsiEI | CGRYCG | 1 cut(s) | 228 |
| BsiSI | CCGG | 2 cut(s) | 53, 1076 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 13, 165, 285, 707, 986, 1043, 1082 |
| BsmAI | GTCTC | 1 cut(s) | 25 |
| BsmI | GAATGC | 3 cut(s) | 297, 472, 951 |
| BsnI | GGCC | 5 cut(s) | 158, 686, 711, 903, 1008 |
| Bsp143I | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| BspACI | CCGC | 9 cut(s) | 7, 17, 351, 427, 430, 509, 594, 915, 927 |
| BspANI | GGCC | 5 cut(s) | 158, 686, 711, 903, 1008 |
| BspCNI | CTCAG | 4 cut(s) | 409, 510, 733, 760 |
| BspDI | ATCGAT | 1 cut(s) | 228 |
| BspFNI | CGCG | 2 cut(s) | 915, 927 |
| BspMAI | CTGCAG | 2 cut(s) | 135, 709 |
| BspMI | ACCTGC | 1 cut(s) | 183 |
| BspPI | GGATC | 4 cut(s) | 224, 449, 673, 964 |
| BsrI | ACTGG | 3 cut(s) | 342, 688, 696 |
| BssECI | CCNNGG | 4 cut(s) | 153, 302, 354, 904 |
| BssMI | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| BssT1I | CCWWGG | 1 cut(s) | 153 |
| Bst2UI | CCWGG | 4 cut(s) | 303, 355, 683, 1038 |
| Bst6I | CTCTTC | 1 cut(s) | 801 |
| BstBAI | YACGTR | 2 cut(s) | 451, 623 |
| BstC8I | GCNNGC | 2 cut(s) | 315, 709 |
| BstDEI | CTNAG | 4 cut(s) | 396, 518, 741, 768 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1041 |
| BstF5I | GGATG | 4 cut(s) | 313, 391, 502, 862 |
| BstFNI | CGCG | 2 cut(s) | 915, 927 |
| BstKTI | GATC | 9 cut(s) | 150, 174, 228, 232, 332, 423, 457, 681, 959 |
| BstMAI | GTCTC | 1 cut(s) | 25 |
| BstMBI | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| BstMCI | CGRYCG | 1 cut(s) | 228 |
| BstNI | CCWGG | 4 cut(s) | 303, 355, 683, 1038 |
| BstSCI | CCNGG | 4 cut(s) | 301, 353, 681, 1036 |
| BstSFI | CTRYAG | 2 cut(s) | 131, 705 |
| BstSNI | TACGTA | 1 cut(s) | 451 |
| BstUI | CGCG | 2 cut(s) | 915, 927 |
| BstV1I | GCAGC | 4 cut(s) | 114, 117, 253, 963 |
| BstX2I | RGATCY | 3 cut(s) | 147, 454, 956 |
| BstYI | RGATCY | 3 cut(s) | 147, 454, 956 |
| Bsu15I | ATCGAT | 1 cut(s) | 228 |
| BsuRI | GGCC | 5 cut(s) | 158, 686, 711, 903, 1008 |
| BsuTUI | ATCGAT | 1 cut(s) | 228 |
| BtrI | CACGTC | 1 cut(s) | 118 |
| BtsCI | GGATG | 4 cut(s) | 313, 391, 502, 862 |
| BveI | ACCTGC | 1 cut(s) | 183 |
| Cac8I | GCNNGC | 2 cut(s) | 315, 709 |
| Cfr13I | GGNCC | 5 cut(s) | 288, 668, 685, 710, 1007 |
| ClaI | ATCGAT | 1 cut(s) | 228 |
| CviAII | CATG | 4 cut(s) | 292, 367, 665, 950 |
| DdeI | CTNAG | 4 cut(s) | 396, 518, 741, 768 |
| DpnI | GATC | 9 cut(s) | 149, 173, 227, 231, 331, 422, 456, 680, 958 |
| DpnII | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| EaeI | YGGCCR | 1 cut(s) | 156 |
| Eam1104I | CTCTTC | 1 cut(s) | 801 |
| EarI | CTCTTC | 1 cut(s) | 801 |
| EciI | GGCGGA | 2 cut(s) | 32, 524 |
| Eco105I | TACGTA | 1 cut(s) | 451 |
| Eco130I | CCWWGG | 1 cut(s) | 153 |
| Eco47I | GGWCC | 2 cut(s) | 288, 668 |
| Eco72I | CACGTG | 1 cut(s) | 623 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1041 |
| EcoRII | CCWGG | 4 cut(s) | 301, 353, 681, 1036 |
| EcoT14I | CCWWGG | 1 cut(s) | 153 |
| EcoT22I | ATGCAT | 1 cut(s) | 951 |
| ErhI | CCWWGG | 1 cut(s) | 153 |
| FaeI | CATG | 4 cut(s) | 295, 370, 668, 953 |
| FaiI | YATR | 5 cut(s) | 293, 368, 666, 933, 951 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 137, 169 |
| FatI | CATG | 4 cut(s) | 291, 366, 664, 949 |
| FauI | CCCGC | 2 cut(s) | 14, 587 |
| FbaI | TGATCA | 1 cut(s) | 171 |
| FblI | GTMKAC | 1 cut(s) | 323 |
| Fnu4HI | GCNGC | 8 cut(s) | 128, 131, 242, 351, 428, 431, 928, 977 |
| FokI | GGATG | 4 cut(s) | 320, 398, 509, 869 |
| Fsp4HI | GCNGC | 8 cut(s) | 128, 131, 242, 351, 428, 431, 928, 977 |
| FspBI | CTAG | 3 cut(s) | 206, 659, 762 |
| GluI | GCNGC | 8 cut(s) | 128, 131, 242, 351, 428, 431, 928, 977 |
| GsaI | CCCAGC | 1 cut(s) | 321 |
| HaeIII | GGCC | 5 cut(s) | 158, 686, 711, 903, 1008 |
| HapII | CCGG | 2 cut(s) | 53, 1076 |
| Hin1II | CATG | 4 cut(s) | 295, 370, 668, 953 |
| HincII | GTYRAC | 1 cut(s) | 324 |
| HindII | GTYRAC | 1 cut(s) | 324 |
| HinfI | GANTC | 8 cut(s) | 100, 325, 488, 544, 745, 752, 770, 821 |
| HpaII | CCGG | 2 cut(s) | 53, 1076 |
| HphI | GGTGA | 3 cut(s) | 71, 181, 401 |
| Hpy166II | GTNNAC | 3 cut(s) | 86, 324, 1057 |
| Hpy188I | TCNGA | 4 cut(s) | 409, 420, 519, 742 |
| Hpy188III | TCNNGA | 6 cut(s) | 175, 233, 333, 541, 749, 968 |
| Hpy8I | GTNNAC | 3 cut(s) | 86, 324, 1057 |
| Hpy99I | CGWCG | 2 cut(s) | 1030, 1068 |
| HpyAV | CCTTC | 5 cut(s) | 172, 592, 610, 824, 1080 |
| HpyCH4IV | ACGT | 5 cut(s) | 117, 450, 622, 648, 1025 |
| HpyCH4V | TGCA | 6 cut(s) | 133, 472, 631, 655, 707, 949 |
| HpyF3I | CTNAG | 4 cut(s) | 396, 518, 741, 768 |
| HpySE526I | ACGT | 5 cut(s) | 117, 450, 622, 648, 1025 |
| Hsp92II | CATG | 4 cut(s) | 295, 370, 668, 953 |
| Ksp22I | TGATCA | 1 cut(s) | 171 |
| Kzo9I | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| LmnI | GCTCC | 2 cut(s) | 578, 814 |
| Lsp1109I | GCAGC | 4 cut(s) | 114, 117, 253, 963 |
| MaeI | CTAG | 3 cut(s) | 206, 659, 762 |
| MaeII | ACGT | 5 cut(s) | 117, 450, 622, 648, 1025 |
| MaeIII | GTNAC | 2 cut(s) | 746, 1021 |
| MalI | GATC | 9 cut(s) | 149, 173, 227, 231, 331, 422, 456, 680, 958 |
| MboI | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| MboII | GAAGA | 3 cut(s) | 86, 729, 788 |
| MfeI | CAATTG | 1 cut(s) | 35 |
| MflI | RGATCY | 3 cut(s) | 147, 454, 956 |
| MlsI | TGGCCA | 1 cut(s) | 158 |
| MluNI | TGGCCA | 1 cut(s) | 158 |
| MlyI | GAGTC | 4 cut(s) | 319, 746, 754, 779 |
| Mox20I | TGGCCA | 1 cut(s) | 158 |
| Mph1103I | ATGCAT | 1 cut(s) | 951 |
| MroXI | GAANNNNTTC | 1 cut(s) | 790 |
| MscI | TGGCCA | 1 cut(s) | 158 |
| MseI | TTAA | 2 cut(s) | 464, 639 |
| Msp20I | TGGCCA | 1 cut(s) | 158 |
| MspI | CCGG | 2 cut(s) | 53, 1076 |
| MspR9I | CCNGG | 4 cut(s) | 303, 355, 683, 1038 |
| MunI | CAATTG | 1 cut(s) | 35 |
| Mva1269I | GAATGC | 3 cut(s) | 297, 472, 951 |
| MvaI | CCWGG | 4 cut(s) | 303, 355, 683, 1038 |
| MvnI | CGCG | 2 cut(s) | 915, 927 |
| NdeII | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| NlaIII | CATG | 4 cut(s) | 295, 370, 668, 953 |
| NmeAIII | GCCGAG | 1 cut(s) | 929 |
| NmuCI | GTSAC | 1 cut(s) | 746 |
| NsiI | ATGCAT | 1 cut(s) | 951 |
| PaqCI | CACCTGC | 1 cut(s) | 183 |
| PctI | GAATGC | 3 cut(s) | 297, 472, 951 |
| PdmI | GAANNNNTTC | 1 cut(s) | 790 |
| PfeI | GAWTC | 4 cut(s) | 100, 488, 544, 821 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 285 |
| PkrI | GCNGC | 8 cut(s) | 129, 132, 243, 352, 429, 432, 929, 978 |
| Ple19I | CGATCG | 1 cut(s) | 228 |
| PleI | GAGTC | 4 cut(s) | 319, 746, 753, 778 |
| PmaCI | CACGTG | 1 cut(s) | 623 |
| PmlI | CACGTG | 1 cut(s) | 623 |
| PpsI | GAGTC | 4 cut(s) | 319, 746, 753, 778 |
| Ppu21I | YACGTR | 2 cut(s) | 451, 623 |
| PshBI | ATTAAT | 1 cut(s) | 464 |
| Psp6I | CCWGG | 4 cut(s) | 301, 353, 681, 1036 |
| PspCI | CACGTG | 1 cut(s) | 623 |
| PspFI | CCCAGC | 1 cut(s) | 317 |
| PspGI | CCWGG | 4 cut(s) | 301, 353, 681, 1036 |
| PspPI | GGNCC | 5 cut(s) | 288, 668, 685, 710, 1007 |
| PstI | CTGCAG | 2 cut(s) | 135, 709 |
| PsuI | RGATCY | 3 cut(s) | 147, 454, 956 |
| PvuI | CGATCG | 1 cut(s) | 228 |
| SalI | GTCGAC | 1 cut(s) | 322 |
| SaqAI | TTAA | 2 cut(s) | 464, 639 |
| SatI | GCNGC | 8 cut(s) | 128, 131, 242, 351, 428, 431, 928, 977 |
| Sau3AI | GATC | 9 cut(s) | 147, 171, 225, 229, 329, 420, 454, 678, 956 |
| Sau96I | GGNCC | 5 cut(s) | 288, 668, 685, 710, 1007 |
| SchI | GAGTC | 4 cut(s) | 319, 746, 754, 779 |
| ScrFI | CCNGG | 4 cut(s) | 303, 355, 683, 1038 |
| SfcI | CTRYAG | 2 cut(s) | 131, 705 |
| SinI | GGWCC | 2 cut(s) | 288, 668 |
| SmlI | CTYRAG | 1 cut(s) | 968 |
| SmoI | CTYRAG | 1 cut(s) | 968 |
| SnaBI | TACGTA | 1 cut(s) | 451 |
| SsiI | CCGC | 9 cut(s) | 7, 17, 351, 427, 430, 509, 594, 915, 927 |
| SspMI | CTAG | 3 cut(s) | 206, 659, 762 |
| StyD4I | CCNGG | 4 cut(s) | 301, 353, 681, 1036 |
| StyI | CCWWGG | 1 cut(s) | 153 |
| TaiI | ACGT | 5 cut(s) | 120, 453, 625, 651, 1028 |
| TaqI | TCGA | 7 cut(s) | 224, 228, 323, 328, 677, 880, 1028 |
| TauI | GCSGC | 4 cut(s) | 353, 430, 433, 930 |
| TfiI | GAWTC | 4 cut(s) | 100, 488, 544, 821 |
| Tru1I | TTAA | 2 cut(s) | 464, 639 |
| Tru9I | TTAA | 2 cut(s) | 464, 639 |
| TseFI | GTSAC | 1 cut(s) | 746 |
| TseI | GCWGC | 4 cut(s) | 127, 130, 241, 976 |
| Tsp45I | GTSAC | 1 cut(s) | 746 |
| TspGWI | ACGGA | 2 cut(s) | 112, 690 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 285 |
| VpaK11BI | GGWCC | 2 cut(s) | 288, 668 |
| VspI | ATTAAT | 1 cut(s) | 464 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1041 |
| XapI | RAATTY | 2 cut(s) | 1049, 1107 |
| XmiI | GTMKAC | 1 cut(s) | 323 |
| XmnI | GAANNNNTTC | 1 cut(s) | 790 |
| XspI | CTAG | 3 cut(s) | 206, 659, 762 |
| Zsp2I | ATGCAT | 1 cut(s) | 951 |