Prupe.7G053800_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000022
Physical Location & Seq
Reverse (-)
9228301 .. 9229815
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G053800.1

Sequence Viewer

Length: 1515 bp
ATGGTGACAGATTTTGCTAATCGTTTTGCCCTAACAGCGGAGGAGCAAACGGAGGTGGTAGTCGAACAAGGTTCAGTGCATAAGTTGAGGACCTCCAACTTCCTTCTCATCGGCAAATTGCTTACACAAAAGGCGTTCAATCCGGAGGCCTTCATGCGCACGATGACAGCTTTATGGCGACCCAAGGTGAGAGTCCATATTGGGAGGCTGGAGGAAAACTTGTTCATGTTCTCATTCTTGACAAAGGAAGACAGACTACGGATACTAGGTGGAGGTTCATGGACTTTCAACCATTTCCTTTTGGTTTTAGCGGAGGCCGATGGCATGGTTCAACCTTCTAGAATTCCGTTGATTAAGCAGGAATTTTGGGTCCAGCTACATGGGCTCCCTCCTGCGTTCATGACGCGAGCCATGGGAAGACAGATTGGGGAGGTGCTGGGGGACTATATCACCTCTGATCAAAGTAAACGGGGGGTCTGTGCAGGAAGCTTTTTACGAGTCCGGGTGGCACTGGATGTGACCAAACCGCTCCGGCGATGTCTGACTGTTCGGTTGGGTGATGGTATAGATGAGGTTGTAAGAGTGGAGATTCGATACGAAAAACTTCCACATACTTGCTACCTATGTGGCAGATTGGATCACATGGAAAAGGAGTGCTCTAAATATGCAGGTGAGGGATTGACGGATCTTGACAAACCATATGGCAAGTGGTTTCAGGAAGATGTGTTTGGGCCAGATTATCGTCGACCGCCAGGACGCCGGTTTGGTTTGGCCTCTAAGCCATGGTCCATGCGTGCTCCGGCAACGGTCGAGGACGAGGAGAAAGACGAGGAAGAGATGGCGGCTGGTGCTAGAGGGCAGCGTGGTGAGGAGGCTAGGGCTGACGTGGATAGGAATCAAGCGGATTCGCAACGGCCACAATTTATGGCGGGGTGTGCGGTTACTGATGTCATAATGTCAGATGCGGAAATCCCATTATTGGAGGCTGCTGAGGGGACTCAATTCCCTCTTCCAGATTTAAATATAACGCTCGAAGTTAATGCTGATGATGAATCACGGGATTCAAGGGCCATCATTCCATACGAGGAGAATTCAATAAAGGGAGTTGCTGGGACATTAAAACCGACGCGGCAGTTACATGAGGAAGGTTTTGCTATGTCTACCACGTGCTCCAACTTCTTTGGGCTTGTCACAAAGGAATGTGGACCACGGATGGAGGATGTGGCCCAAGATGACCCATTTGGTCTAGGGCCAATTATTCAACAGATATCGTTGGAAGCCAAGAAGGAAGCCAAGAAGAAATCCCGACATAGAATAAAGAAGCAAAGAAGTATGCACAAGTGGGAACCAAGACCAGTAGGAGAAGTAAATCACAACGGCAAACGAGGCCCGCGAGGGGTTAGAGTTTTTGAGACGTTACCGGCTCTAAAAAAACGTTGCTTATCTTCTGGCTCTTTTGTATGGCAACAAGAAATGGTGGAGGCTGACGAGCATCAGCCCCGCCGAGTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

505

Amino Acids

57.08

Weight (kDa)

7.17

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 659
Acc16I TGCGCA 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 529
AccI GTMKAC 2 cut(s) 745, 1160
AccII CGCG 3 cut(s) 406, 1129, 1393
AccIII TCCGGA 1 cut(s) 142
AclI AACGTT 1 cut(s) 1435
AclWI GGATC 2 cut(s) 645, 693
AcoI YGGCCR 1 cut(s) 914
AcsI RAATTY 3 cut(s) 342, 362, 1090
AcvI CACGTG 1 cut(s) 1167
AcyI GRCGYC 1 cut(s) 757
AfiI CCNNNNNNNGG 3 cut(s) 37, 979, 1396
AgsI TTSAA 6 cut(s) 139, 289, 332, 1065, 1095, 1262
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 1 cut(s) 751
AjuI GAANNNNNNNTTGG 2 cut(s) 711, 743
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 3 cut(s) 170, 376, 489
AluI AGCT 3 cut(s) 170, 376, 489
Alw21I GWGCWC 3 cut(s) 659, 799, 1172
Alw26I GTCTC 1 cut(s) 1406
AlwI GGATC 2 cut(s) 645, 693
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 9 cut(s) 147, 315, 731, 771, 914, 1068, 1224, 1250, 1387
ApeKI GCWGC 2 cut(s) 859, 986
ApoI RAATTY 3 cut(s) 342, 362, 1090
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 9 cut(s) 90, 370, 731, 786, 1068, 1205, 1225, 1250, 1388
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 6 cut(s) 16, 199, 442, 569, 683, 878
AvaII GGWCC 4 cut(s) 90, 370, 786, 1205
BanII GRGCYC 1 cut(s) 387
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BbrPI CACGTG 1 cut(s) 1167
BbsI GAAGAC 2 cut(s) 255, 424
Bbv12I GWGCWC 3 cut(s) 659, 799, 1172
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 2 cut(s) 871, 973
BccI CCATC 5 cut(s) 314, 554, 832, 1079, 1207
BceAI ACGGC 2 cut(s) 929, 1393
BcgI CGANNNNNNTGC 2 cut(s) 1022, 1056
BciT130I CCWGG 1 cut(s) 753
BciVI GTATCC 1 cut(s) 255
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 1406
BfaI CTAG 5 cut(s) 266, 339, 852, 876, 1247
BfuAI ACCTGC 1 cut(s) 659
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 4 cut(s) 843, 860, 987, 1130
BlsI GCNGC 4 cut(s) 844, 861, 988, 1131
Bme1390I CCNGG 2 cut(s) 503, 753
Bme18I GGWCC 4 cut(s) 90, 370, 786, 1205
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 9 cut(s) 90, 370, 731, 786, 1068, 1205, 1225, 1250, 1388
BmiI GGNNCC 3 cut(s) 371, 386, 1347
BmrFI CCNGG 2 cut(s) 503, 753
BmsI GCATC 2 cut(s) 952, 1501
BpiI GAAGAC 2 cut(s) 255, 424
BpmI CTGGAG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 990
BpuMI CCSGG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 1167
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 757
BsaJI CCNNGG 4 cut(s) 183, 411, 782, 1208
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 979, 1396
Bse118I RCCGGY 2 cut(s) 759, 1420
Bse1I ACTGG 2 cut(s) 516, 1355
Bse8I GATNNNNATC 1 cut(s) 894
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 753
BseDI CCNNGG 4 cut(s) 183, 411, 782, 1208
BseGI GGATG 3 cut(s) 520, 1218, 1225
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 3 cut(s) 37, 979, 1396
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 2 cut(s) 516, 1355
BseRI GAGGAG 4 cut(s) 56, 833, 884, 1100
BseXI GCAGC 2 cut(s) 871, 973
BseYI CCCAGC 2 cut(s) 436, 1109
BsgI GTGCAG 1 cut(s) 501
Bsh1236I CGCG 3 cut(s) 406, 1129, 1393
Bsh1285I CGRYCG 2 cut(s) 749, 810
BshFI GGCC 9 cut(s) 149, 317, 733, 773, 916, 1070, 1226, 1252, 1389
BsiEI CGRYCG 2 cut(s) 749, 810
BsiHKAI GWGCWC 3 cut(s) 659, 799, 1172
BsiSI CCGG 6 cut(s) 143, 502, 532, 760, 800, 1421
BslFI GGGAC 3 cut(s) 455, 1009, 1126
BslI CCNNNNNNNGG 3 cut(s) 37, 979, 1396
BsmAI GTCTC 1 cut(s) 1406
BsmBI CGTCTC 1 cut(s) 1406
BsmFI GGGAC 3 cut(s) 455, 1009, 1126
BsnI GGCC 9 cut(s) 149, 317, 733, 773, 916, 1070, 1226, 1252, 1389
Bsp1286I GDGCHC 4 cut(s) 387, 659, 799, 1172
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 457, 637, 685
Bsp19I CCATGG 2 cut(s) 411, 782
BspANI GGCC 9 cut(s) 149, 317, 733, 773, 916, 1070, 1226, 1252, 1389
BspCNI CTCAG 1 cut(s) 982
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 3 cut(s) 406, 1129, 1393
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 3 cut(s) 371, 386, 1347
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 2 cut(s) 645, 693
BsrBI CCGCTC 1 cut(s) 529
BsrFI RCCGGY 2 cut(s) 759, 1420
BsrI ACTGG 2 cut(s) 516, 1355
BssAI RCCGGY 2 cut(s) 759, 1420
BssECI CCNNGG 4 cut(s) 183, 411, 782, 1208
BssMI GATC 3 cut(s) 457, 637, 685
BssNI GRCGYC 1 cut(s) 757
BssT1I CCWWGG 3 cut(s) 183, 411, 782
Bst2UI CCWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 547, 808
Bst6I CTCTTC 2 cut(s) 828, 1014
BstACI GRCGYC 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 1167
BstC8I GCNNGC 3 cut(s) 408, 795, 1391
BstDEI CTNAG 2 cut(s) 777, 990
BstDSI CCRYGG 3 cut(s) 411, 782, 1208
BstF5I GGATG 3 cut(s) 520, 1218, 1225
BstFNI CGCG 3 cut(s) 406, 1129, 1393
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 3 cut(s) 460, 640, 688
BstMAI GTCTC 1 cut(s) 1406
BstMBI GATC 3 cut(s) 457, 637, 685
BstMCI CGRYCG 2 cut(s) 749, 810
BstMWI GCNNNNNNNGC 5 cut(s) 35, 382, 848, 935, 1386
BstNI CCWGG 1 cut(s) 753
BstSCI CCNGG 2 cut(s) 501, 751
BstUI CGCG 3 cut(s) 406, 1129, 1393
BstV1I GCAGC 2 cut(s) 871, 973
BstV2I GAAGAC 2 cut(s) 255, 424
BstX2I RGATCY 1 cut(s) 685
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 1 cut(s) 685
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 9 cut(s) 149, 317, 733, 773, 916, 1070, 1226, 1252, 1389
BtgI CCRYGG 3 cut(s) 411, 782, 1208
BtgZI GCGATG 1 cut(s) 550
BtrI CACGTC 1 cut(s) 886
BtsCI GGATG 3 cut(s) 520, 1218, 1225
BtsIMutI CAGTG 2 cut(s) 81, 509
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 3 cut(s) 408, 795, 1391
CciI TCATGA 1 cut(s) 399
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 2 cut(s) 759, 1420
Cfr13I GGNCC 9 cut(s) 90, 370, 731, 786, 1068, 1205, 1225, 1250, 1388
CseI GACGC 3 cut(s) 412, 765, 1135
DdeI CTNAG 2 cut(s) 777, 990
DpnI GATC 3 cut(s) 459, 639, 687
DpnII GATC 3 cut(s) 457, 637, 685
DraI TTTAAA 1 cut(s) 1020
EaeI YGGCCR 1 cut(s) 914
Eam1104I CTCTTC 2 cut(s) 828, 1014
EarI CTCTTC 2 cut(s) 828, 1014
Eco130I CCWWGG 3 cut(s) 183, 411, 782
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 1269
Eco47I GGWCC 4 cut(s) 90, 370, 786, 1205
Eco72I CACGTG 1 cut(s) 1167
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 2 cut(s) 342, 1090
EcoRII CCWGG 1 cut(s) 751
EcoRV GATATC 1 cut(s) 1269
EcoT14I CCWWGG 3 cut(s) 183, 411, 782
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 3 cut(s) 183, 411, 782
Esp3I CGTCTC 1 cut(s) 1406
FaqI GGGAC 3 cut(s) 455, 1009, 1126
FauI CCCGC 3 cut(s) 922, 1398, 1508
FauNDI CATATG 1 cut(s) 700
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 2 cut(s) 745, 1160
Fnu4HI GCNGC 4 cut(s) 843, 860, 987, 1130
FokI GGATG 3 cut(s) 527, 1225, 1232
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 4 cut(s) 843, 860, 987, 1130
FspAI RTGCGCAY 1 cut(s) 158
FspBI CTAG 5 cut(s) 266, 339, 852, 876, 1247
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GluI GCNGC 4 cut(s) 843, 860, 987, 1130
GsaI CCCAGC 2 cut(s) 440, 1113
GsuI CTGGAG 1 cut(s) 230
HaeIII GGCC 9 cut(s) 149, 317, 733, 773, 916, 1070, 1226, 1252, 1389
HapII CCGG 6 cut(s) 143, 502, 532, 760, 800, 1421
HgaI GACGC 3 cut(s) 412, 765, 1135
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 757
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 746
HindII GTYRAC 1 cut(s) 746
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 8 cut(s) 192, 498, 589, 895, 905, 997, 1052, 1061
HpaII CCGG 6 cut(s) 143, 502, 532, 760, 800, 1421
HphI GGTGA 6 cut(s) 16, 199, 442, 569, 683, 878
Hpy166II GTNNAC 4 cut(s) 467, 746, 1161, 1205
Hpy188I TCNGA 3 cut(s) 457, 543, 961
Hpy188III TCNNGA 8 cut(s) 143, 238, 339, 400, 689, 716, 1013, 1305
Hpy8I GTNNAC 4 cut(s) 467, 746, 1161, 1205
Hpy99I CGWCG 2 cut(s) 747, 1129
HpyAV CCTTC 5 cut(s) 113, 160, 345, 1139, 1279
HpyCH4III ACNGT 2 cut(s) 547, 808
HpyCH4IV ACGT 4 cut(s) 885, 1166, 1415, 1435
HpyCH4V TGCA 5 cut(s) 79, 482, 668, 1336, 1510
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 382, 848, 935, 1386
HpyF3I CTNAG 2 cut(s) 777, 990
HpySE526I ACGT 4 cut(s) 885, 1166, 1415, 1435
Hsp92I GRCGYC 1 cut(s) 757
HspAI GCGC 1 cut(s) 157
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 457, 637, 685
LmnI GCTCC 5 cut(s) 43, 390, 534, 802, 1175
Lsp1109I GCAGC 2 cut(s) 871, 973
LweI GCATC 2 cut(s) 952, 1501
MaeI CTAG 5 cut(s) 266, 339, 852, 876, 1247
MaeII ACGT 4 cut(s) 885, 1166, 1415, 1435
MaeIII GTNAC 6 cut(s) 4, 517, 940, 1134, 1189, 1416
MalI GATC 3 cut(s) 459, 639, 687
MbiI CCGCTC 1 cut(s) 529
MboI GATC 3 cut(s) 457, 637, 685
MboII GAAGA 7 cut(s) 260, 429, 731, 845, 1001, 1309, 1437
MflI RGATCY 1 cut(s) 685
MhlI GDGCHC 4 cut(s) 387, 659, 799, 1172
MluCI AATT 7 cut(s) 116, 342, 362, 920, 1001, 1090, 1254
MlyI GAGTC 3 cut(s) 201, 507, 991
MmeI TCCRAC 3 cut(s) 120, 1197, 1254
MroI TCCGGA 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 4 cut(s) 354, 1019, 1038, 1118
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 6 cut(s) 143, 502, 532, 760, 800, 1421
MspR9I CCNGG 2 cut(s) 503, 753
MvaI CCWGG 1 cut(s) 753
MvnI CGCG 3 cut(s) 406, 1129, 1393
MwoI GCNNNNNNNGC 5 cut(s) 35, 382, 848, 935, 1386
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 2 cut(s) 411, 782
NdeI CATATG 1 cut(s) 700
NdeII GATC 3 cut(s) 457, 637, 685
NlaIV GGNNCC 3 cut(s) 371, 386, 1347
NmuCI GTSAC 3 cut(s) 4, 517, 1189
NsbI TGCGCA 1 cut(s) 158
PagI TCATGA 1 cut(s) 399
PaqCI CACCTGC 1 cut(s) 659
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 1390
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 5 cut(s) 589, 895, 905, 1052, 1061
PkrI GCNGC 4 cut(s) 844, 861, 988, 1131
PleI GAGTC 3 cut(s) 200, 506, 991
PmaCI CACGTG 1 cut(s) 1167
PmlI CACGTG 1 cut(s) 1167
PpsI GAGTC 3 cut(s) 200, 506, 991
Ppu21I YACGTR 1 cut(s) 1167
PpuMI RGGWCCY 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 1435
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 751
PspCI CACGTG 1 cut(s) 1167
PspFI CCCAGC 2 cut(s) 436, 1109
PspGI CCWGG 1 cut(s) 751
PspN4I GGNNCC 3 cut(s) 371, 386, 1347
PspPI GGNCC 9 cut(s) 90, 370, 731, 786, 1068, 1205, 1225, 1250, 1388
PspPPI RGGWCCY 1 cut(s) 90
PsuI RGATCY 1 cut(s) 685
SalI GTCGAC 1 cut(s) 744
SaqAI TTAA 4 cut(s) 354, 1019, 1038, 1118
SatI GCNGC 4 cut(s) 843, 860, 987, 1130
Sau3AI GATC 3 cut(s) 457, 637, 685
Sau96I GGNCC 9 cut(s) 90, 370, 731, 786, 1068, 1205, 1225, 1250, 1388
SchI GAGTC 3 cut(s) 201, 507, 991
ScrFI CCNGG 2 cut(s) 503, 753
SduI GDGCHC 4 cut(s) 387, 659, 799, 1172
SfaNI GCATC 2 cut(s) 952, 1501
SinI GGWCC 4 cut(s) 90, 370, 786, 1205
SmiI ATTTAAAT 1 cut(s) 1020
Sse9I AATT 7 cut(s) 116, 342, 362, 920, 1001, 1090, 1254
SseBI AGGCCT 1 cut(s) 149
SspMI CTAG 5 cut(s) 266, 339, 852, 876, 1247
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 501, 751
StyI CCWWGG 3 cut(s) 183, 411, 782
SwaI ATTTAAAT 1 cut(s) 1020
TaaI ACNGT 2 cut(s) 547, 808
TaiI ACGT 4 cut(s) 888, 1169, 1418, 1438
TaqI TCGA 5 cut(s) 63, 592, 745, 810, 1032
TasI AATT 7 cut(s) 116, 342, 362, 920, 1001, 1090, 1254
TauI GCSGC 2 cut(s) 845, 1132
TfiI GAWTC 5 cut(s) 589, 895, 905, 1052, 1061
Tru1I TTAA 4 cut(s) 354, 1019, 1038, 1118
Tru9I TTAA 4 cut(s) 354, 1019, 1038, 1118
TscAI CASTG 2 cut(s) 81, 516
TseFI GTSAC 3 cut(s) 4, 517, 1189
TseI GCWGC 2 cut(s) 859, 986
Tsp45I GTSAC 3 cut(s) 4, 517, 1189
TspDTI ATGAA 5 cut(s) 142, 214, 267, 388, 1065
TspGWI ACGGA 5 cut(s) 65, 274, 336, 698, 1225
TspRI CASTG 2 cut(s) 81, 516
VpaK11BI GGWCC 4 cut(s) 90, 370, 786, 1205
XapI RAATTY 3 cut(s) 342, 362, 1090
XbaI TCTAGA 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XmiI GTMKAC 2 cut(s) 745, 1160
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 5 cut(s) 266, 339, 852, 876, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.