Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 934 |
| Acc65I | GGTACC | 1 cut(s) | 221 |
| AccB1I | GGYRCC | 1 cut(s) | 221 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 878 |
| AccBSI | CCGCTC | 1 cut(s) | 56 |
| AciI | CCGC | 3 cut(s) | 56, 538, 905 |
| AclWI | GGATC | 5 cut(s) | 41, 275, 288, 313, 326 |
| AcuI | CTGAAG | 1 cut(s) | 496 |
| AfaI | GTAC | 3 cut(s) | 223, 411, 656 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 328, 466, 607, 818, 878 |
| AgsI | TTSAA | 3 cut(s) | 86, 187, 205 |
| AjnI | CCWGG | 1 cut(s) | 49 |
| AluBI | AGCT | 1 cut(s) | 674 |
| AluI | AGCT | 1 cut(s) | 674 |
| Alw21I | GWGCWC | 1 cut(s) | 374 |
| Alw26I | GTCTC | 2 cut(s) | 298, 519 |
| AlwI | GGATC | 5 cut(s) | 41, 275, 288, 313, 326 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 266 |
| AoxI | GGCC | 3 cut(s) | 424, 498, 760 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 104 |
| Asp718I | GGTACC | 1 cut(s) | 221 |
| AspLEI | GCGC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 3 cut(s) | 424, 598, 863 |
| AsuC2I | CCSGG | 1 cut(s) | 820 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| AsuNHI | GCTAGC | 1 cut(s) | 517 |
| AvaII | GGWCC | 2 cut(s) | 598, 863 |
| BamHI | GGATCC | 2 cut(s) | 280, 318 |
| BanI | GGYRCC | 1 cut(s) | 221 |
| BauI | CACGAG | 1 cut(s) | 834 |
| BbsI | GAAGAC | 1 cut(s) | 360 |
| Bbv12I | GWGCWC | 1 cut(s) | 374 |
| BccI | CCATC | 8 cut(s) | 28, 263, 622, 744, 774, 838, 877, 893 |
| BceAI | ACGGC | 2 cut(s) | 124, 411 |
| BciT130I | CCWGG | 1 cut(s) | 51 |
| BcnI | CCSGG | 1 cut(s) | 820 |
| BcoDI | GTCTC | 2 cut(s) | 298, 519 |
| BfaI | CTAG | 1 cut(s) | 518 |
| BfoI | RGCGCY | 1 cut(s) | 158 |
| BisI | GCNGC | 1 cut(s) | 538 |
| BlsI | GCNGC | 1 cut(s) | 539 |
| Bme1390I | CCNGG | 2 cut(s) | 51, 820 |
| Bme18I | GGWCC | 2 cut(s) | 598, 863 |
| BmgT120I | GGNCC | 3 cut(s) | 424, 598, 863 |
| BmiI | GGNNCC | 6 cut(s) | 223, 282, 320, 425, 648, 864 |
| BmrFI | CCNGG | 2 cut(s) | 51, 820 |
| BmrI | ACTGGG | 1 cut(s) | 615 |
| BmsI | GCATC | 3 cut(s) | 203, 382, 513 |
| BmtI | GCTAGC | 1 cut(s) | 521 |
| BmuI | ACTGGG | 1 cut(s) | 615 |
| BpiI | GAAGAC | 1 cut(s) | 360 |
| BpuMI | CCSGG | 1 cut(s) | 820 |
| Bsa29I | ATCGAT | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 2 cut(s) | 227, 427 |
| BsaWI | WCCGGW | 3 cut(s) | 73, 724, 802 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 393, 423, 516, 546 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 328, 466, 607, 818, 878 |
| Bse118I | RCCGGY | 1 cut(s) | 500 |
| Bse1I | ACTGG | 2 cut(s) | 379, 610 |
| BseBI | CCWGG | 1 cut(s) | 51 |
| BseCI | ATCGAT | 1 cut(s) | 416 |
| BseDI | CCNNGG | 2 cut(s) | 227, 427 |
| BseGI | GGATG | 7 cut(s) | 39, 633, 755, 766, 798, 888, 916 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 328, 466, 607, 818, 878 |
| BseNI | ACTGG | 2 cut(s) | 379, 610 |
| Bsh1285I | CGRYCG | 1 cut(s) | 416 |
| BshFI | GGCC | 3 cut(s) | 426, 500, 762 |
| BshNI | GGYRCC | 1 cut(s) | 221 |
| BshVI | ATCGAT | 1 cut(s) | 416 |
| BsiEI | CGRYCG | 1 cut(s) | 416 |
| BsiHKAI | GWGCWC | 1 cut(s) | 374 |
| BsiSI | CCGG | 6 cut(s) | 74, 501, 522, 725, 803, 819 |
| BslFI | GGGAC | 1 cut(s) | 876 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 328, 466, 607, 818, 878 |
| BsmAI | GTCTC | 2 cut(s) | 298, 519 |
| BsmFI | GGGAC | 1 cut(s) | 876 |
| BsnI | GGCC | 3 cut(s) | 426, 500, 762 |
| Bsp1286I | GDGCHC | 1 cut(s) | 374 |
| Bsp143I | GATC | 4 cut(s) | 46, 280, 318, 413 |
| BspACI | CCGC | 3 cut(s) | 56, 538, 905 |
| BspANI | GGCC | 3 cut(s) | 426, 500, 762 |
| BspDI | ATCGAT | 1 cut(s) | 416 |
| BspLI | GGNNCC | 6 cut(s) | 223, 282, 320, 425, 648, 864 |
| BspOI | GCTAGC | 1 cut(s) | 521 |
| BspPI | GGATC | 5 cut(s) | 41, 275, 288, 313, 326 |
| BspT107I | GGYRCC | 1 cut(s) | 221 |
| BsrBI | CCGCTC | 1 cut(s) | 56 |
| BsrFI | RCCGGY | 1 cut(s) | 500 |
| BsrI | ACTGG | 2 cut(s) | 379, 610 |
| BssAI | RCCGGY | 1 cut(s) | 500 |
| BssECI | CCNNGG | 2 cut(s) | 227, 427 |
| BssMI | GATC | 4 cut(s) | 46, 280, 318, 413 |
| BssSI | CACGAG | 1 cut(s) | 834 |
| BssT1I | CCWWGG | 1 cut(s) | 227 |
| Bst2BI | CACGAG | 1 cut(s) | 834 |
| Bst2UI | CCWGG | 1 cut(s) | 51 |
| Bst4CI | ACNGT | 3 cut(s) | 81, 359, 733 |
| Bst6I | CTCTTC | 1 cut(s) | 834 |
| BstC8I | GCNNGC | 3 cut(s) | 498, 502, 519 |
| BstDSI | CCRYGG | 1 cut(s) | 427 |
| BstF5I | GGATG | 7 cut(s) | 39, 633, 755, 766, 798, 888, 916 |
| BstH2I | RGCGCY | 1 cut(s) | 158 |
| BstHHI | GCGC | 1 cut(s) | 157 |
| BstKTI | GATC | 4 cut(s) | 49, 283, 321, 416 |
| BstMAI | GTCTC | 2 cut(s) | 298, 519 |
| BstMBI | GATC | 4 cut(s) | 46, 280, 318, 413 |
| BstMCI | CGRYCG | 1 cut(s) | 416 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 161, 251 |
| BstNI | CCWGG | 1 cut(s) | 51 |
| BstNSI | RCATGY | 1 cut(s) | 410 |
| BstSCI | CCNGG | 2 cut(s) | 49, 818 |
| BstV2I | GAAGAC | 1 cut(s) | 360 |
| BstX2I | RGATCY | 3 cut(s) | 46, 280, 318 |
| BstYI | RGATCY | 3 cut(s) | 46, 280, 318 |
| Bsu15I | ATCGAT | 1 cut(s) | 416 |
| BsuRI | GGCC | 3 cut(s) | 426, 500, 762 |
| BsuTUI | ATCGAT | 1 cut(s) | 416 |
| BtgI | CCRYGG | 1 cut(s) | 427 |
| BtgZI | GCGATG | 1 cut(s) | 179 |
| BtsCI | GGATG | 7 cut(s) | 39, 633, 755, 766, 798, 888, 916 |
| BtsIMutI | CAGTG | 3 cut(s) | 264, 372, 603 |
| Cac8I | GCNNGC | 3 cut(s) | 498, 502, 519 |
| CaiI | CAGNNNCTG | 1 cut(s) | 266 |
| CfoI | GCGC | 1 cut(s) | 157 |
| Cfr10I | RCCGGY | 1 cut(s) | 500 |
| Cfr13I | GGNCC | 3 cut(s) | 424, 598, 863 |
| ClaI | ATCGAT | 1 cut(s) | 416 |
| Csp6I | GTAC | 3 cut(s) | 222, 410, 655 |
| CviAII | CATG | 2 cut(s) | 407, 690 |
| CviQI | GTAC | 3 cut(s) | 222, 410, 655 |
| DpnI | GATC | 4 cut(s) | 48, 282, 320, 415 |
| DpnII | GATC | 4 cut(s) | 46, 280, 318, 413 |
| Eam1104I | CTCTTC | 1 cut(s) | 834 |
| EarI | CTCTTC | 1 cut(s) | 834 |
| EciI | GGCGGA | 1 cut(s) | 920 |
| Eco130I | CCWWGG | 1 cut(s) | 227 |
| Eco47I | GGWCC | 2 cut(s) | 598, 863 |
| Eco57I | CTGAAG | 1 cut(s) | 496 |
| EcoRII | CCWGG | 1 cut(s) | 49 |
| EcoT14I | CCWWGG | 1 cut(s) | 227 |
| EcoT22I | ATGCAT | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 227 |
| FaeI | CATG | 2 cut(s) | 410, 693 |
| FaiI | YATR | 7 cut(s) | 408, 482, 546, 558, 653, 691, 934 |
| FaqI | GGGAC | 1 cut(s) | 876 |
| FatI | CATG | 2 cut(s) | 406, 689 |
| Fnu4HI | GCNGC | 1 cut(s) | 538 |
| FokI | GGATG | 7 cut(s) | 46, 640, 753, 762, 805, 895, 923 |
| Fsp4HI | GCNGC | 1 cut(s) | 538 |
| FspBI | CTAG | 1 cut(s) | 518 |
| GlaI | GCGC | 1 cut(s) | 156 |
| GluI | GCNGC | 1 cut(s) | 538 |
| HaeII | RGCGCY | 1 cut(s) | 158 |
| HaeIII | GGCC | 3 cut(s) | 426, 500, 762 |
| HapII | CCGG | 6 cut(s) | 74, 501, 522, 725, 803, 819 |
| HhaI | GCGC | 1 cut(s) | 157 |
| Hin1II | CATG | 2 cut(s) | 410, 693 |
| Hin6I | GCGC | 1 cut(s) | 155 |
| HinP1I | GCGC | 1 cut(s) | 155 |
| HpaII | CCGG | 6 cut(s) | 74, 501, 522, 725, 803, 819 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy166II | GTNNAC | 3 cut(s) | 335, 590, 833 |
| Hpy188I | TCNGA | 7 cut(s) | 30, 147, 199, 323, 461, 621, 646 |
| Hpy188III | TCNNGA | 5 cut(s) | 93, 187, 316, 350, 834 |
| Hpy8I | GTNNAC | 3 cut(s) | 335, 590, 833 |
| HpyAV | CCTTC | 4 cut(s) | 193, 235, 308, 775 |
| HpyCH4III | ACNGT | 3 cut(s) | 81, 359, 733 |
| HpyCH4V | TGCA | 3 cut(s) | 260, 395, 496 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 161, 251 |
| Hsp92II | CATG | 2 cut(s) | 410, 693 |
| HspAI | GCGC | 1 cut(s) | 155 |
| KpnI | GGTACC | 1 cut(s) | 225 |
| KroI | GCCGGC | 1 cut(s) | 500 |
| KroNI | GCCGGC | 1 cut(s) | 502 |
| Kzo9I | GATC | 4 cut(s) | 46, 280, 318, 413 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| LweI | GCATC | 3 cut(s) | 203, 382, 513 |
| MaeI | CTAG | 1 cut(s) | 518 |
| MaeIII | GTNAC | 2 cut(s) | 262, 693 |
| MalI | GATC | 4 cut(s) | 48, 282, 320, 415 |
| MbiI | CCGCTC | 1 cut(s) | 56 |
| MboI | GATC | 4 cut(s) | 46, 280, 318, 413 |
| MboII | GAAGA | 2 cut(s) | 365, 851 |
| MfeI | CAATTG | 1 cut(s) | 308 |
| MflI | RGATCY | 3 cut(s) | 46, 280, 318 |
| MhlI | GDGCHC | 1 cut(s) | 374 |
| MluCI | AATT | 2 cut(s) | 12, 308 |
| MmeI | TCCRAC | 1 cut(s) | 767 |
| Mph1103I | ATGCAT | 1 cut(s) | 397 |
| MroNI | GCCGGC | 1 cut(s) | 500 |
| MroXI | GAANNNNTTC | 1 cut(s) | 104 |
| MspI | CCGG | 6 cut(s) | 74, 501, 522, 725, 803, 819 |
| MspR9I | CCNGG | 2 cut(s) | 51, 820 |
| MunI | CAATTG | 1 cut(s) | 308 |
| MvaI | CCWGG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 161, 251 |
| NaeI | GCCGGC | 1 cut(s) | 502 |
| NciI | CCSGG | 1 cut(s) | 820 |
| NdeII | GATC | 4 cut(s) | 46, 280, 318, 413 |
| NgoMIV | GCCGGC | 1 cut(s) | 500 |
| NheI | GCTAGC | 1 cut(s) | 517 |
| NlaIII | CATG | 2 cut(s) | 410, 693 |
| NlaIV | GGNNCC | 6 cut(s) | 223, 282, 320, 425, 648, 864 |
| NmeAIII | GCCGAG | 1 cut(s) | 638 |
| NmuCI | GTSAC | 1 cut(s) | 262 |
| NsiI | ATGCAT | 1 cut(s) | 397 |
| NspI | RCATGY | 1 cut(s) | 410 |
| PdiI | GCCGGC | 1 cut(s) | 502 |
| PdmI | GAANNNNTTC | 1 cut(s) | 104 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 878 |
| PfoI | TCCNGGA | 1 cut(s) | 49 |
| PkrI | GCNGC | 1 cut(s) | 539 |
| Ple19I | CGATCG | 1 cut(s) | 416 |
| PsiI | TTATAA | 1 cut(s) | 934 |
| Psp6I | CCWGG | 1 cut(s) | 49 |
| PspGI | CCWGG | 1 cut(s) | 49 |
| PspN4I | GGNNCC | 6 cut(s) | 223, 282, 320, 425, 648, 864 |
| PspPI | GGNCC | 3 cut(s) | 424, 598, 863 |
| PstNI | CAGNNNCTG | 1 cut(s) | 266 |
| PsuI | RGATCY | 3 cut(s) | 46, 280, 318 |
| PvuI | CGATCG | 1 cut(s) | 416 |
| RsaI | GTAC | 3 cut(s) | 223, 411, 656 |
| RsaNI | GTAC | 3 cut(s) | 222, 410, 655 |
| SatI | GCNGC | 1 cut(s) | 538 |
| Sau3AI | GATC | 4 cut(s) | 46, 280, 318, 413 |
| Sau96I | GGNCC | 3 cut(s) | 424, 598, 863 |
| ScrFI | CCNGG | 2 cut(s) | 51, 820 |
| SduI | GDGCHC | 1 cut(s) | 374 |
| SetI | ASST | 7 cut(s) | 22, 66, 173, 223, 343, 652, 676 |
| SfaNI | GCATC | 3 cut(s) | 203, 382, 513 |
| SinI | GGWCC | 2 cut(s) | 598, 863 |
| Sse9I | AATT | 2 cut(s) | 12, 308 |
| SsiI | CCGC | 3 cut(s) | 56, 538, 905 |
| SspI | AATATT | 1 cut(s) | 930 |
| SspMI | CTAG | 1 cut(s) | 518 |
| StyD4I | CCNGG | 2 cut(s) | 49, 818 |
| StyI | CCWWGG | 1 cut(s) | 227 |
| TaaI | ACNGT | 3 cut(s) | 81, 359, 733 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TasI | AATT | 2 cut(s) | 12, 308 |
| TatI | WGTACW | 1 cut(s) | 654 |
| TauI | GCSGC | 1 cut(s) | 540 |
| TscAI | CASTG | 3 cut(s) | 271, 379, 610 |
| TseFI | GTSAC | 1 cut(s) | 262 |
| Tsp45I | GTSAC | 1 cut(s) | 262 |
| TspDTI | ATGAA | 1 cut(s) | 373 |
| TspRI | CASTG | 3 cut(s) | 271, 379, 610 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 878 |
| VpaK11BI | GGWCC | 2 cut(s) | 598, 863 |
| XceI | RCATGY | 1 cut(s) | 410 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 608 |
| XmnI | GAANNNNTTC | 1 cut(s) | 104 |
| XspI | CTAG | 1 cut(s) | 518 |
| Zsp2I | ATGCAT | 1 cut(s) | 397 |