Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 163 - 198 | 7.3e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 433 |
| AciI | CCGC | 2 cut(s) | 149, 152 |
| AclWI | GGATC | 1 cut(s) | 656 |
| AcuI | CTGAAG | 2 cut(s) | 473, 661 |
| AfaI | GTAC | 2 cut(s) | 33, 93 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 197, 478 |
| AflIII | ACRYGT | 1 cut(s) | 397 |
| AgsI | TTSAA | 1 cut(s) | 59 |
| AjiI | CACGTC | 1 cut(s) | 137 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 373, 405, 599, 631 |
| AluBI | AGCT | 1 cut(s) | 623 |
| AluI | AGCT | 1 cut(s) | 623 |
| AlwI | GGATC | 1 cut(s) | 656 |
| AoxI | GGCC | 2 cut(s) | 236, 337 |
| ApeKI | GCWGC | 3 cut(s) | 146, 266, 538 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 505, 537 |
| AseI | ATTAAT | 1 cut(s) | 495 |
| AspLEI | GCGC | 1 cut(s) | 142 |
| AsuC2I | CCSGG | 2 cut(s) | 26, 293 |
| AsuHPI | GGTGA | 4 cut(s) | 25, 337, 343, 493 |
| BbsI | GAAGAC | 2 cut(s) | 77, 165 |
| BbvI | GCAGC | 3 cut(s) | 158, 253, 525 |
| BccI | CCATC | 5 cut(s) | 269, 298, 346, 471, 478 |
| BclI | TGATCA | 1 cut(s) | 168 |
| BcnI | CCSGG | 2 cut(s) | 26, 293 |
| BfaI | CTAG | 1 cut(s) | 579 |
| BglII | AGATCT | 2 cut(s) | 318, 581 |
| BisI | GCNGC | 5 cut(s) | 147, 150, 153, 267, 539 |
| BlsI | GCNGC | 5 cut(s) | 148, 151, 154, 268, 540 |
| Bme1390I | CCNGG | 2 cut(s) | 26, 293 |
| BmgBI | CACGTC | 1 cut(s) | 137 |
| BmiI | GGNNCC | 1 cut(s) | 229 |
| BmrFI | CCNGG | 2 cut(s) | 26, 293 |
| BoxI | GACNNNNGTC | 1 cut(s) | 398 |
| BpiI | GAAGAC | 2 cut(s) | 77, 165 |
| BpmI | CTGGAG | 1 cut(s) | 545 |
| BpuMI | CCSGG | 2 cut(s) | 26, 293 |
| BsaJI | CCNNGG | 1 cut(s) | 233 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 197, 478 |
| BseDI | CCNNGG | 1 cut(s) | 233 |
| BseGI | GGATG | 1 cut(s) | 280 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 197, 478 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BseRI | GAGGAG | 2 cut(s) | 66, 323 |
| BseXI | GCAGC | 3 cut(s) | 158, 253, 525 |
| BsgI | GTGCAG | 1 cut(s) | 242 |
| Bsh1285I | CGRYCG | 1 cut(s) | 124 |
| BshFI | GGCC | 2 cut(s) | 238, 339 |
| BsiEI | CGRYCG | 1 cut(s) | 124 |
| BsiSI | CCGG | 2 cut(s) | 25, 292 |
| BsiWI | CGTACG | 1 cut(s) | 31 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 197, 478 |
| BsnI | GGCC | 2 cut(s) | 238, 339 |
| Bsp143I | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| Bsp19I | CCATGG | 1 cut(s) | 233 |
| BspACI | CCGC | 2 cut(s) | 149, 152 |
| BspANI | GGCC | 2 cut(s) | 238, 339 |
| BspCNI | CTCAG | 1 cut(s) | 184 |
| BspLI | GGNNCC | 1 cut(s) | 229 |
| BspPI | GGATC | 1 cut(s) | 656 |
| BssECI | CCNNGG | 1 cut(s) | 233 |
| BssMI | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst4CI | ACNGT | 1 cut(s) | 96 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 47, 192 |
| BstDSI | CCRYGG | 1 cut(s) | 233 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 195 |
| BstF5I | GGATG | 1 cut(s) | 280 |
| BstHHI | GCGC | 1 cut(s) | 142 |
| BstKTI | GATC | 5 cut(s) | 171, 321, 366, 584, 664 |
| BstMBI | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| BstMCI | CGRYCG | 1 cut(s) | 124 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 146, 152 |
| BstNSI | RCATGY | 1 cut(s) | 401 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 398 |
| BstSCI | CCNGG | 2 cut(s) | 24, 291 |
| BstV1I | GCAGC | 3 cut(s) | 158, 253, 525 |
| BstV2I | GAAGAC | 2 cut(s) | 77, 165 |
| BstX2I | RGATCY | 2 cut(s) | 318, 581 |
| BstYI | RGATCY | 2 cut(s) | 318, 581 |
| BsuRI | GGCC | 2 cut(s) | 238, 339 |
| BtgI | CCRYGG | 1 cut(s) | 233 |
| BtrI | CACGTC | 1 cut(s) | 137 |
| BtsCI | GGATG | 1 cut(s) | 280 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| CfoI | GCGC | 1 cut(s) | 142 |
| Csp6I | GTAC | 2 cut(s) | 32, 92 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 47, 82 |
| CviAII | CATG | 4 cut(s) | 234, 314, 386, 398 |
| CviJI | RGCY | 8 cut(s) | 128, 238, 266, 339, 384, 504, 538, 623 |
| CviKI_1 | RGCY | 8 cut(s) | 128, 238, 266, 339, 384, 504, 538, 623 |
| CviQI | GTAC | 2 cut(s) | 32, 92 |
| DdeI | CTNAG | 2 cut(s) | 47, 192 |
| DpnI | GATC | 5 cut(s) | 170, 320, 365, 583, 663 |
| DpnII | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco147I | AGGCCT | 1 cut(s) | 339 |
| Eco57I | CTGAAG | 2 cut(s) | 473, 661 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| FaeI | CATG | 4 cut(s) | 237, 317, 389, 401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 526, 558 |
| FatI | CATG | 4 cut(s) | 233, 313, 385, 397 |
| FbaI | TGATCA | 1 cut(s) | 168 |
| FblI | GTMKAC | 1 cut(s) | 433 |
| Fnu4HI | GCNGC | 5 cut(s) | 147, 150, 153, 267, 539 |
| FokI | GGATG | 1 cut(s) | 287 |
| Fsp4HI | GCNGC | 5 cut(s) | 147, 150, 153, 267, 539 |
| FspBI | CTAG | 1 cut(s) | 579 |
| GlaI | GCGC | 1 cut(s) | 141 |
| GluI | GCNGC | 5 cut(s) | 147, 150, 153, 267, 539 |
| GsuI | CTGGAG | 1 cut(s) | 545 |
| HaeIII | GGCC | 2 cut(s) | 238, 339 |
| HapII | CCGG | 2 cut(s) | 25, 292 |
| HhaI | GCGC | 1 cut(s) | 142 |
| Hin1II | CATG | 4 cut(s) | 237, 317, 389, 401 |
| Hin6I | GCGC | 1 cut(s) | 140 |
| HinP1I | GCGC | 1 cut(s) | 140 |
| HinfI | GANTC | 1 cut(s) | 182 |
| HpaII | CCGG | 2 cut(s) | 25, 292 |
| HphI | GGTGA | 4 cut(s) | 25, 337, 343, 493 |
| Hpy166II | GTNNAC | 2 cut(s) | 44, 434 |
| Hpy188I | TCNGA | 2 cut(s) | 286, 661 |
| Hpy188III | TCNNGA | 4 cut(s) | 191, 367, 490, 524 |
| Hpy8I | GTNNAC | 2 cut(s) | 44, 434 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyAV | CCTTC | 1 cut(s) | 350 |
| HpyCH4III | ACNGT | 1 cut(s) | 96 |
| HpyCH4IV | ACGT | 2 cut(s) | 74, 136 |
| HpyCH4V | TGCA | 2 cut(s) | 102, 223 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 146, 152 |
| HpyF3I | CTNAG | 2 cut(s) | 47, 192 |
| HpySE526I | ACGT | 2 cut(s) | 74, 136 |
| Hsp92II | CATG | 4 cut(s) | 237, 317, 389, 401 |
| HspAI | GCGC | 1 cut(s) | 140 |
| Ksp22I | TGATCA | 1 cut(s) | 168 |
| Kzo9I | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| Lsp1109I | GCAGC | 3 cut(s) | 158, 253, 525 |
| MaeI | CTAG | 1 cut(s) | 579 |
| MaeII | ACGT | 2 cut(s) | 74, 136 |
| MalI | GATC | 5 cut(s) | 170, 320, 365, 583, 663 |
| MboI | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| MboII | GAAGA | 8 cut(s) | 82, 170, 453, 538, 610, 613, 616, 667 |
| MflI | RGATCY | 2 cut(s) | 318, 581 |
| MluCI | AATT | 4 cut(s) | 59, 103, 438, 613 |
| MlyI | GAGTC | 1 cut(s) | 191 |
| MseI | TTAA | 1 cut(s) | 495 |
| MspA1I | CMGCKG | 1 cut(s) | 149 |
| MspI | CCGG | 2 cut(s) | 25, 292 |
| MspR9I | CCNGG | 2 cut(s) | 26, 293 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 146, 152 |
| NciI | CCSGG | 2 cut(s) | 26, 293 |
| NcoI | CCATGG | 1 cut(s) | 233 |
| NdeII | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| NlaIII | CATG | 4 cut(s) | 237, 317, 389, 401 |
| NlaIV | GGNNCC | 1 cut(s) | 229 |
| NspI | RCATGY | 1 cut(s) | 401 |
| PceI | AGGCCT | 1 cut(s) | 339 |
| PciI | ACATGT | 1 cut(s) | 397 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 408 |
| Pfl23II | CGTACG | 1 cut(s) | 31 |
| PfoI | TCCNGGA | 1 cut(s) | 291 |
| PkrI | GCNGC | 5 cut(s) | 148, 151, 154, 268, 540 |
| PleI | GAGTC | 1 cut(s) | 190 |
| PpsI | GAGTC | 1 cut(s) | 190 |
| PscI | ACATGT | 1 cut(s) | 397 |
| PshAI | GACNNNNGTC | 1 cut(s) | 398 |
| PshBI | ATTAAT | 1 cut(s) | 495 |
| PspLI | CGTACG | 1 cut(s) | 31 |
| PspN4I | GGNNCC | 1 cut(s) | 229 |
| PsuI | RGATCY | 2 cut(s) | 318, 581 |
| RsaI | GTAC | 2 cut(s) | 33, 93 |
| RsaNI | GTAC | 2 cut(s) | 32, 92 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| SatI | GCNGC | 5 cut(s) | 147, 150, 153, 267, 539 |
| Sau3AI | GATC | 5 cut(s) | 168, 318, 363, 581, 661 |
| SchI | GAGTC | 1 cut(s) | 191 |
| ScrFI | CCNGG | 2 cut(s) | 26, 293 |
| SetI | ASST | 6 cut(s) | 77, 139, 202, 219, 284, 625 |
| Sse9I | AATT | 4 cut(s) | 59, 103, 438, 613 |
| SseBI | AGGCCT | 1 cut(s) | 339 |
| SsiI | CCGC | 2 cut(s) | 149, 152 |
| SspMI | CTAG | 1 cut(s) | 579 |
| StuI | AGGCCT | 1 cut(s) | 339 |
| StyD4I | CCNGG | 2 cut(s) | 24, 291 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaaI | ACNGT | 1 cut(s) | 96 |
| TaiI | ACGT | 2 cut(s) | 77, 139 |
| TaqI | TCGA | 2 cut(s) | 402, 475 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 4 cut(s) | 59, 103, 438, 613 |
| TauI | GCSGC | 2 cut(s) | 152, 155 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TseI | GCWGC | 3 cut(s) | 146, 266, 538 |
| TspDTI | ATGAA | 1 cut(s) | 546 |
| TspGWI | ACGGA | 1 cut(s) | 287 |
| VspI | ATTAAT | 1 cut(s) | 495 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 195 |
| XceI | RCATGY | 1 cut(s) | 401 |
| XmiI | GTMKAC | 1 cut(s) | 433 |
| XspI | CTAG | 1 cut(s) | 579 |