Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 35 - 108 | 1.1e-08 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 588 |
| AccI | GTMKAC | 1 cut(s) | 626 |
| AccII | CGCG | 1 cut(s) | 966 |
| AciI | CCGC | 7 cut(s) | 415, 425, 654, 733, 736, 812, 897 |
| AclWI | GGATC | 8 cut(s) | 27, 61, 74, 87, 256, 335, 348, 752 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 4 cut(s) | 231, 1265, 1315, 1323 |
| AcuI | CTGAAG | 1 cut(s) | 1254 |
| AfeI | AGCGCT | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 76, 421, 467, 588, 1202, 1259, 1298 |
| AjnI | CCWGG | 2 cut(s) | 604, 1252 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 325, 357 |
| AluBI | AGCT | 6 cut(s) | 371, 547, 616, 884, 1033, 1192 |
| AluI | AGCT | 6 cut(s) | 371, 547, 616, 884, 1033, 1192 |
| Alw21I | GWGCWC | 1 cut(s) | 751 |
| Alw26I | GTCTC | 2 cut(s) | 166, 328 |
| AlwI | GGATC | 8 cut(s) | 27, 61, 74, 87, 256, 335, 348, 752 |
| Aor51HI | AGCGCT | 1 cut(s) | 156 |
| AoxI | GGCC | 2 cut(s) | 36, 1117 |
| ApeKI | GCWGC | 2 cut(s) | 544, 1192 |
| ApoI | RAATTY | 4 cut(s) | 231, 1265, 1315, 1323 |
| AseI | ATTAAT | 1 cut(s) | 767 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1006 |
| AspLEI | GCGC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 2 cut(s) | 55, 591 |
| AsuHPI | GGTGA | 2 cut(s) | 484, 704 |
| AvaII | GGWCC | 2 cut(s) | 55, 591 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BamHI | GGATCC | 2 cut(s) | 79, 340 |
| Bbv12I | GWGCWC | 1 cut(s) | 751 |
| BbvI | GCAGC | 2 cut(s) | 556, 1179 |
| BccI | CCATC | 7 cut(s) | 323, 461, 673, 683, 794, 872, 1067 |
| BceAI | ACGGC | 2 cut(s) | 1159, 1295 |
| BciT130I | CCWGG | 2 cut(s) | 606, 1254 |
| BclI | TGATCA | 1 cut(s) | 474 |
| BcoDI | GTCTC | 2 cut(s) | 166, 328 |
| BfaI | CTAG | 4 cut(s) | 509, 621, 630, 978 |
| BfoI | RGCGCY | 1 cut(s) | 158 |
| BisI | GCNGC | 4 cut(s) | 545, 654, 734, 1193 |
| BlsI | GCNGC | 4 cut(s) | 546, 655, 735, 1194 |
| Bme1390I | CCNGG | 2 cut(s) | 606, 1254 |
| Bme18I | GGWCC | 2 cut(s) | 55, 591 |
| BmgT120I | GGNCC | 2 cut(s) | 55, 591 |
| BmiI | GGNNCC | 3 cut(s) | 81, 342, 1248 |
| BmrFI | CCNGG | 2 cut(s) | 606, 1254 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BoxI | GACNNNNGTC | 1 cut(s) | 181 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 997, 1029 |
| BpuEI | CTTGAG | 2 cut(s) | 95, 1205 |
| BsaAI | YACGTR | 1 cut(s) | 754 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 5 cut(s) | 287, 594, 605, 1120, 1132 |
| BsaWI | WCCGGW | 2 cut(s) | 460, 1291 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 473, 503, 730, 760 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 76, 421, 467, 588, 1202, 1259, 1298 |
| Bse1I | ACTGG | 1 cut(s) | 645 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseBI | CCWGG | 2 cut(s) | 606, 1254 |
| BseDI | CCNNGG | 5 cut(s) | 287, 594, 605, 1120, 1132 |
| BseGI | GGATG | 5 cut(s) | 334, 616, 694, 805, 1078 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 76, 421, 467, 588, 1202, 1259, 1298 |
| BseMII | CTCAG | 5 cut(s) | 149, 713, 812, 948, 975 |
| BseNI | ACTGG | 1 cut(s) | 645 |
| BseRI | GAGGAG | 6 cut(s) | 209, 295, 497, 689, 1002, 1093 |
| BseXI | GCAGC | 2 cut(s) | 556, 1179 |
| Bsh1236I | CGCG | 1 cut(s) | 966 |
| BshFI | GGCC | 2 cut(s) | 38, 1119 |
| BsiHKAI | GWGCWC | 1 cut(s) | 751 |
| BsiSI | CCGG | 2 cut(s) | 461, 1292 |
| BslFI | GGGAC | 1 cut(s) | 463 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 76, 421, 467, 588, 1202, 1259, 1298 |
| BsmAI | GTCTC | 2 cut(s) | 166, 328 |
| BsmBI | CGTCTC | 1 cut(s) | 166 |
| BsmFI | GGGAC | 1 cut(s) | 463 |
| BsmI | GAATGC | 3 cut(s) | 600, 775, 1167 |
| BsnI | GGCC | 2 cut(s) | 38, 1119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 751 |
| Bsp19I | CCATGG | 1 cut(s) | 594 |
| Bsp68I | TCGCGA | 1 cut(s) | 966 |
| BspACI | CCGC | 7 cut(s) | 415, 425, 654, 733, 736, 812, 897 |
| BspANI | GGCC | 2 cut(s) | 38, 1119 |
| BspCNI | CTCAG | 5 cut(s) | 150, 712, 813, 949, 976 |
| BspFNI | CGCG | 1 cut(s) | 966 |
| BspHI | TCATGA | 1 cut(s) | 408 |
| BspLI | GGNNCC | 3 cut(s) | 81, 342, 1248 |
| BspPI | GGATC | 8 cut(s) | 27, 61, 74, 87, 256, 335, 348, 752 |
| BsrI | ACTGG | 1 cut(s) | 645 |
| BssECI | CCNNGG | 5 cut(s) | 287, 594, 605, 1120, 1132 |
| BssT1I | CCWWGG | 1 cut(s) | 594 |
| Bst2UI | CCWGG | 2 cut(s) | 606, 1254 |
| Bst4CI | ACNGT | 4 cut(s) | 126, 322, 337, 444 |
| Bst6I | CTCTTC | 2 cut(s) | 242, 272 |
| BstBAI | YACGTR | 1 cut(s) | 754 |
| BstC8I | GCNNGC | 2 cut(s) | 618, 925 |
| BstDEI | CTNAG | 5 cut(s) | 158, 699, 821, 957, 984 |
| BstDSI | CCRYGG | 2 cut(s) | 287, 594 |
| BstEII | GGTNACC | 1 cut(s) | 199 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1257 |
| BstF5I | GGATG | 5 cut(s) | 334, 616, 694, 805, 1078 |
| BstFNI | CGCG | 1 cut(s) | 966 |
| BstH2I | RGCGCY | 1 cut(s) | 158 |
| BstHHI | GCGC | 1 cut(s) | 157 |
| BstMAI | GTCTC | 2 cut(s) | 166, 328 |
| BstNI | CCWGG | 2 cut(s) | 606, 1254 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 181 |
| BstPI | GGTNACC | 1 cut(s) | 199 |
| BstSCI | CCNGG | 2 cut(s) | 604, 1252 |
| BstUI | CGCG | 1 cut(s) | 966 |
| BstV1I | GCAGC | 2 cut(s) | 556, 1179 |
| BstX2I | RGATCY | 5 cut(s) | 19, 79, 248, 340, 757 |
| BstYI | RGATCY | 5 cut(s) | 19, 79, 248, 340, 757 |
| BsuRI | GGCC | 2 cut(s) | 38, 1119 |
| BtgI | CCRYGG | 2 cut(s) | 287, 594 |
| BtsCI | GGATG | 5 cut(s) | 334, 616, 694, 805, 1078 |
| BtuMI | TCGCGA | 1 cut(s) | 966 |
| Cac8I | GCNNGC | 2 cut(s) | 618, 925 |
| CciI | TCATGA | 1 cut(s) | 408 |
| CfoI | GCGC | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 2 cut(s) | 55, 591 |
| CsiI | ACCWGGT | 1 cut(s) | 1252 |
| CviAII | CATG | 5 cut(s) | 302, 409, 595, 670, 857 |
| DdeI | CTNAG | 5 cut(s) | 158, 699, 821, 957, 984 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 2 cut(s) | 242, 272 |
| EarI | CTCTTC | 2 cut(s) | 242, 272 |
| EciI | GGCGGA | 3 cut(s) | 440, 751, 827 |
| Eco130I | CCWWGG | 1 cut(s) | 594 |
| Eco47I | GGWCC | 2 cut(s) | 55, 591 |
| Eco47III | AGCGCT | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 1254 |
| Eco91I | GGTNACC | 1 cut(s) | 199 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1257 |
| EcoO109I | RGGNCCY | 1 cut(s) | 55 |
| EcoO65I | GGTNACC | 1 cut(s) | 199 |
| EcoRI | GAATTC | 1 cut(s) | 231 |
| EcoRII | CCWGG | 2 cut(s) | 604, 1252 |
| EcoT14I | CCWWGG | 1 cut(s) | 594 |
| ErhI | CCWWGG | 1 cut(s) | 594 |
| Esp3I | CGTCTC | 1 cut(s) | 166 |
| FaeI | CATG | 5 cut(s) | 305, 412, 598, 673, 860 |
| FaqI | GGGAC | 1 cut(s) | 463 |
| FatI | CATG | 5 cut(s) | 301, 408, 594, 669, 856 |
| FauI | CCCGC | 2 cut(s) | 422, 890 |
| FauNDI | CATATG | 1 cut(s) | 538 |
| FbaI | TGATCA | 1 cut(s) | 474 |
| FblI | GTMKAC | 1 cut(s) | 626 |
| Fnu4HI | GCNGC | 4 cut(s) | 545, 654, 734, 1193 |
| FokI | GGATG | 5 cut(s) | 341, 623, 701, 812, 1085 |
| Fsp4HI | GCNGC | 4 cut(s) | 545, 654, 734, 1193 |
| FspBI | CTAG | 4 cut(s) | 509, 621, 630, 978 |
| GlaI | GCGC | 1 cut(s) | 156 |
| GluI | GCNGC | 4 cut(s) | 545, 654, 734, 1193 |
| HaeII | RGCGCY | 1 cut(s) | 158 |
| HaeIII | GGCC | 2 cut(s) | 38, 1119 |
| HapII | CCGG | 2 cut(s) | 461, 1292 |
| HhaI | GCGC | 1 cut(s) | 157 |
| Hin1II | CATG | 5 cut(s) | 305, 412, 598, 673, 860 |
| Hin6I | GCGC | 1 cut(s) | 155 |
| HinP1I | GCGC | 1 cut(s) | 155 |
| HincII | GTYRAC | 2 cut(s) | 129, 627 |
| HindII | GTYRAC | 2 cut(s) | 129, 627 |
| HindIII | AAGCTT | 1 cut(s) | 369 |
| HinfI | GANTC | 9 cut(s) | 283, 379, 791, 847, 961, 968, 986, 1037, 1306 |
| HpaI | GTTAAC | 1 cut(s) | 129 |
| HpaII | CCGG | 2 cut(s) | 461, 1292 |
| HphI | GGTGA | 2 cut(s) | 484, 704 |
| Hpy166II | GTNNAC | 5 cut(s) | 122, 129, 291, 627, 1273 |
| Hpy188I | TCNGA | 7 cut(s) | 24, 253, 328, 712, 723, 822, 958 |
| Hpy188III | TCNNGA | 6 cut(s) | 359, 409, 636, 844, 965, 1184 |
| Hpy8I | GTNNAC | 5 cut(s) | 122, 129, 291, 627, 1273 |
| HpyAV | CCTTC | 5 cut(s) | 184, 262, 895, 913, 1040 |
| HpyCH4III | ACNGT | 4 cut(s) | 126, 322, 337, 444 |
| HpyCH4IV | ACGT | 4 cut(s) | 404, 430, 753, 1241 |
| HpyCH4V | TGCA | 3 cut(s) | 257, 775, 1165 |
| HpyF3I | CTNAG | 5 cut(s) | 158, 699, 821, 957, 984 |
| HpySE526I | ACGT | 4 cut(s) | 404, 430, 753, 1241 |
| Hsp92II | CATG | 5 cut(s) | 305, 412, 598, 673, 860 |
| HspAI | GCGC | 1 cut(s) | 155 |
| Ksp22I | TGATCA | 1 cut(s) | 474 |
| KspAI | GTTAAC | 1 cut(s) | 129 |
| LmnI | GCTCC | 3 cut(s) | 881, 1030, 1246 |
| Lsp1109I | GCAGC | 2 cut(s) | 556, 1179 |
| LweI | GCATC | 1 cut(s) | 244 |
| MabI | ACCWGGT | 1 cut(s) | 1252 |
| MaeI | CTAG | 4 cut(s) | 509, 621, 630, 978 |
| MaeII | ACGT | 4 cut(s) | 404, 430, 753, 1241 |
| MaeIII | GTNAC | 3 cut(s) | 199, 1139, 1237 |
| MboII | GAAGA | 6 cut(s) | 17, 56, 229, 230, 289, 945 |
| MflI | RGATCY | 5 cut(s) | 19, 79, 248, 340, 757 |
| MhlI | GDGCHC | 1 cut(s) | 751 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MlyI | GAGTC | 5 cut(s) | 292, 962, 970, 995, 1315 |
| MmeI | TCCRAC | 2 cut(s) | 94, 1224 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1006 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 128, 396, 767 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1146 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspI | CCGG | 2 cut(s) | 461, 1292 |
| MspR9I | CCNGG | 2 cut(s) | 606, 1254 |
| Mva1269I | GAATGC | 3 cut(s) | 600, 775, 1167 |
| MvaI | CCWGG | 2 cut(s) | 606, 1254 |
| MvnI | CGCG | 1 cut(s) | 966 |
| NcoI | CCATGG | 1 cut(s) | 594 |
| NdeI | CATATG | 1 cut(s) | 538 |
| NlaIII | CATG | 5 cut(s) | 305, 412, 598, 673, 860 |
| NlaIV | GGNNCC | 3 cut(s) | 81, 342, 1248 |
| NmeAIII | GCCGAG | 2 cut(s) | 1145, 1157 |
| NmuCI | GTSAC | 1 cut(s) | 1139 |
| NruI | TCGCGA | 1 cut(s) | 966 |
| PagI | TCATGA | 1 cut(s) | 408 |
| PctI | GAATGC | 3 cut(s) | 600, 775, 1167 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1006 |
| PfeI | GAWTC | 4 cut(s) | 379, 791, 847, 1037 |
| PflFI | GACNNNGTC | 1 cut(s) | 631 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 588 |
| PkrI | GCNGC | 4 cut(s) | 546, 655, 735, 1194 |
| PleI | GAGTC | 5 cut(s) | 291, 962, 969, 994, 1314 |
| PpsI | GAGTC | 5 cut(s) | 291, 962, 969, 994, 1314 |
| Ppu21I | YACGTR | 1 cut(s) | 754 |
| PpuMI | RGGWCCY | 1 cut(s) | 55 |
| PshAI | GACNNNNGTC | 1 cut(s) | 181 |
| PshBI | ATTAAT | 1 cut(s) | 767 |
| Psp5II | RGGWCCY | 1 cut(s) | 55 |
| Psp6I | CCWGG | 2 cut(s) | 604, 1252 |
| PspEI | GGTNACC | 1 cut(s) | 199 |
| PspGI | CCWGG | 2 cut(s) | 604, 1252 |
| PspN4I | GGNNCC | 3 cut(s) | 81, 342, 1248 |
| PspPI | GGNCC | 2 cut(s) | 55, 591 |
| PspPPI | RGGWCCY | 1 cut(s) | 55 |
| PsuI | RGATCY | 5 cut(s) | 19, 79, 248, 340, 757 |
| PsyI | GACNNNGTC | 1 cut(s) | 631 |
| RruI | TCGCGA | 1 cut(s) | 966 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1146 |
| SalI | GTCGAC | 1 cut(s) | 625 |
| SaqAI | TTAA | 3 cut(s) | 128, 396, 767 |
| SatI | GCNGC | 4 cut(s) | 545, 654, 734, 1193 |
| Sau96I | GGNCC | 2 cut(s) | 55, 591 |
| SchI | GAGTC | 5 cut(s) | 292, 962, 970, 995, 1315 |
| ScrFI | CCNGG | 2 cut(s) | 606, 1254 |
| SduI | GDGCHC | 1 cut(s) | 751 |
| SexAI | ACCWGGT | 1 cut(s) | 1252 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SinI | GGWCC | 2 cut(s) | 55, 591 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1146 |
| SmlI | CTYRAG | 2 cut(s) | 74, 1184 |
| SmoI | CTYRAG | 2 cut(s) | 74, 1184 |
| SsiI | CCGC | 7 cut(s) | 415, 425, 654, 733, 736, 812, 897 |
| SspMI | CTAG | 4 cut(s) | 509, 621, 630, 978 |
| StyD4I | CCNGG | 2 cut(s) | 604, 1252 |
| StyI | CCWWGG | 1 cut(s) | 594 |
| TaaI | ACNGT | 4 cut(s) | 126, 322, 337, 444 |
| TaiI | ACGT | 4 cut(s) | 407, 433, 756, 1244 |
| TaqI | TCGA | 6 cut(s) | 100, 382, 388, 527, 626, 1096 |
| TauI | GCSGC | 2 cut(s) | 656, 736 |
| TfiI | GAWTC | 4 cut(s) | 379, 791, 847, 1037 |
| Tru1I | TTAA | 3 cut(s) | 128, 396, 767 |
| Tru9I | TTAA | 3 cut(s) | 128, 396, 767 |
| TseFI | GTSAC | 1 cut(s) | 1139 |
| TseI | GCWGC | 2 cut(s) | 544, 1192 |
| Tsp45I | GTSAC | 1 cut(s) | 1139 |
| TspDTI | ATGAA | 1 cut(s) | 397 |
| TspGWI | ACGGA | 2 cut(s) | 276, 494 |
| Tth111I | GACNNNGTC | 1 cut(s) | 631 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 588 |
| VpaK11BI | GGWCC | 2 cut(s) | 55, 591 |
| VspI | ATTAAT | 1 cut(s) | 767 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1257 |
| XapI | RAATTY | 4 cut(s) | 231, 1265, 1315, 1323 |
| XmiI | GTMKAC | 1 cut(s) | 626 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1006 |
| XspI | CTAG | 4 cut(s) | 509, 621, 630, 978 |