ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 201 |
| Acc36I | ACCTGC | 1 cut(s) | 201 |
| AciI | CCGC | 2 cut(s) | 335, 679 |
| AcoI | YGGCCR | 2 cut(s) | 16, 315 |
| AcsI | RAATTY | 2 cut(s) | 76, 736 |
| AcuI | CTGAAG | 2 cut(s) | 68, 731 |
| AfaI | GTAC | 1 cut(s) | 185 |
| AfeI | AGCGCT | 1 cut(s) | 526 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 631, 632, 753 |
| AgsI | TTSAA | 3 cut(s) | 403, 410, 607 |
| AjnI | CCWGG | 1 cut(s) | 780 |
| AluBI | AGCT | 4 cut(s) | 176, 239, 473, 603 |
| AluI | AGCT | 4 cut(s) | 176, 239, 473, 603 |
| Alw26I | GTCTC | 2 cut(s) | 212, 595 |
| Ama87I | CYCGRG | 2 cut(s) | 179, 625 |
| Aor51HI | AGCGCT | 1 cut(s) | 526 |
| AoxI | GGCC | 3 cut(s) | 16, 315, 783 |
| ApeKI | GCWGC | 1 cut(s) | 423 |
| ApoI | RAATTY | 2 cut(s) | 76, 736 |
| AspLEI | GCGC | 1 cut(s) | 527 |
| AspS9I | GGNCC | 1 cut(s) | 784 |
| AsuC2I | CCSGG | 2 cut(s) | 626, 627 |
| AvaI | CYCGRG | 2 cut(s) | 179, 625 |
| AxyI | CCTNAGG | 1 cut(s) | 330 |
| BalI | TGGCCA | 1 cut(s) | 317 |
| BbvI | GCAGC | 1 cut(s) | 435 |
| BccI | CCATC | 4 cut(s) | 59, 254, 353, 745 |
| BciT130I | CCWGG | 1 cut(s) | 782 |
| BcnI | CCSGG | 2 cut(s) | 626, 627 |
| BcoDI | GTCTC | 2 cut(s) | 212, 595 |
| BfaI | CTAG | 1 cut(s) | 741 |
| BfmI | CTRYAG | 1 cut(s) | 459 |
| BfoI | RGCGCY | 1 cut(s) | 528 |
| BfuAI | ACCTGC | 1 cut(s) | 201 |
| BisI | GCNGC | 3 cut(s) | 336, 424, 680 |
| BlsI | GCNGC | 3 cut(s) | 337, 425, 681 |
| Bme1390I | CCNGG | 3 cut(s) | 626, 627, 782 |
| BmeT110I | CYCGRG | 2 cut(s) | 179, 625 |
| BmgT120I | GGNCC | 1 cut(s) | 784 |
| BmiI | GGNNCC | 1 cut(s) | 771 |
| BmrFI | CCNGG | 3 cut(s) | 626, 627, 782 |
| BmrI | ACTGGG | 1 cut(s) | 290 |
| BmsI | GCATC | 1 cut(s) | 145 |
| BmuI | ACTGGG | 1 cut(s) | 290 |
| BpmI | CTGGAG | 1 cut(s) | 81 |
| BpuMI | CCSGG | 2 cut(s) | 626, 627 |
| BsaJI | CCNNGG | 5 cut(s) | 427, 624, 625, 626, 780 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 631, 632, 753 |
| Bse1I | ACTGG | 3 cut(s) | 64, 296, 392 |
| Bse21I | CCTNAGG | 1 cut(s) | 330 |
| BseBI | CCWGG | 1 cut(s) | 782 |
| BseDI | CCNNGG | 5 cut(s) | 427, 624, 625, 626, 780 |
| BseGI | GGATG | 3 cut(s) | 160, 364, 620 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 631, 632, 753 |
| BseMII | CTCAG | 2 cut(s) | 321, 524 |
| BseNI | ACTGG | 3 cut(s) | 64, 296, 392 |
| BseRI | GAGGAG | 2 cut(s) | 567, 593 |
| BseXI | GCAGC | 1 cut(s) | 435 |
| BsgI | GTGCAG | 1 cut(s) | 442 |
| BshFI | GGCC | 3 cut(s) | 18, 317, 785 |
| BsiHKCI | CYCGRG | 2 cut(s) | 179, 625 |
| BsiSI | CCGG | 1 cut(s) | 626 |
| BslFI | GGGAC | 2 cut(s) | 520, 769 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 631, 632, 753 |
| BsmAI | GTCTC | 2 cut(s) | 212, 595 |
| BsmFI | GGGAC | 2 cut(s) | 520, 769 |
| BsnI | GGCC | 3 cut(s) | 18, 317, 785 |
| BsoBI | CYCGRG | 2 cut(s) | 179, 625 |
| BspACI | CCGC | 2 cut(s) | 335, 679 |
| BspANI | GGCC | 3 cut(s) | 18, 317, 785 |
| BspCNI | CTCAG | 2 cut(s) | 322, 523 |
| BspLI | GGNNCC | 1 cut(s) | 771 |
| BspMI | ACCTGC | 1 cut(s) | 201 |
| BspQI | GCTCTTC | 1 cut(s) | 635 |
| BsrI | ACTGG | 3 cut(s) | 64, 296, 392 |
| BssECI | CCNNGG | 5 cut(s) | 427, 624, 625, 626, 780 |
| BssT1I | CCWWGG | 1 cut(s) | 427 |
| Bst2UI | CCWGG | 1 cut(s) | 782 |
| Bst4CI | ACNGT | 2 cut(s) | 245, 733 |
| Bst6I | CTCTTC | 3 cut(s) | 215, 461, 635 |
| BstC8I | GCNNGC | 3 cut(s) | 445, 529, 684 |
| BstDEI | CTNAG | 5 cut(s) | 330, 417, 510, 540, 671 |
| BstF5I | GGATG | 3 cut(s) | 160, 364, 620 |
| BstH2I | RGCGCY | 1 cut(s) | 528 |
| BstHHI | GCGC | 1 cut(s) | 527 |
| BstMAI | GTCTC | 2 cut(s) | 212, 595 |
| BstNI | CCWGG | 1 cut(s) | 782 |
| BstNSI | RCATGY | 1 cut(s) | 535 |
| BstSCI | CCNGG | 3 cut(s) | 624, 625, 780 |
| BstSFI | CTRYAG | 1 cut(s) | 459 |
| BstV1I | GCAGC | 1 cut(s) | 435 |
| Bsu36I | CCTNAGG | 1 cut(s) | 330 |
| BsuRI | GGCC | 3 cut(s) | 18, 317, 785 |
| BtsCI | GGATG | 3 cut(s) | 160, 364, 620 |
| BtsIMutI | CAGTG | 1 cut(s) | 303 |
| BveI | ACCTGC | 1 cut(s) | 201 |
| Cac8I | GCNNGC | 3 cut(s) | 445, 529, 684 |
| CfoI | GCGC | 1 cut(s) | 527 |
| Cfr13I | GGNCC | 1 cut(s) | 784 |
| Cfr9I | CCCGGG | 1 cut(s) | 625 |
| CseI | GACGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 1 cut(s) | 184 |
| CviAII | CATG | 2 cut(s) | 230, 532 |
| CviQI | GTAC | 1 cut(s) | 184 |
| DdeI | CTNAG | 5 cut(s) | 330, 417, 510, 540, 671 |
| EaeI | YGGCCR | 2 cut(s) | 16, 315 |
| Eam1104I | CTCTTC | 3 cut(s) | 215, 461, 635 |
| EarI | CTCTTC | 3 cut(s) | 215, 461, 635 |
| Eco130I | CCWWGG | 1 cut(s) | 427 |
| Eco47III | AGCGCT | 1 cut(s) | 526 |
| Eco57I | CTGAAG | 2 cut(s) | 68, 731 |
| Eco81I | CCTNAGG | 1 cut(s) | 330 |
| Eco88I | CYCGRG | 2 cut(s) | 179, 625 |
| EcoRI | GAATTC | 1 cut(s) | 736 |
| EcoRII | CCWGG | 1 cut(s) | 780 |
| EcoT14I | CCWWGG | 1 cut(s) | 427 |
| ErhI | CCWWGG | 1 cut(s) | 427 |
| FaeI | CATG | 2 cut(s) | 233, 535 |
| FaiI | YATR | 3 cut(s) | 231, 533, 587 |
| FaqI | GGGAC | 2 cut(s) | 520, 769 |
| FatI | CATG | 2 cut(s) | 229, 531 |
| Fnu4HI | GCNGC | 3 cut(s) | 336, 424, 680 |
| FokI | GGATG | 3 cut(s) | 167, 371, 607 |
| Fsp4HI | GCNGC | 3 cut(s) | 336, 424, 680 |
| FspBI | CTAG | 1 cut(s) | 741 |
| GlaI | GCGC | 1 cut(s) | 526 |
| GluI | GCNGC | 3 cut(s) | 336, 424, 680 |
| GsuI | CTGGAG | 1 cut(s) | 81 |
| HaeII | RGCGCY | 1 cut(s) | 528 |
| HaeIII | GGCC | 3 cut(s) | 18, 317, 785 |
| HapII | CCGG | 1 cut(s) | 626 |
| HgaI | GACGC | 1 cut(s) | 122 |
| HhaI | GCGC | 1 cut(s) | 527 |
| Hin1II | CATG | 2 cut(s) | 233, 535 |
| Hin6I | GCGC | 1 cut(s) | 525 |
| HinP1I | GCGC | 1 cut(s) | 525 |
| HindIII | AAGCTT | 1 cut(s) | 601 |
| HinfI | GANTC | 2 cut(s) | 490, 508 |
| HpaII | CCGG | 1 cut(s) | 626 |
| Hpy166II | GTNNAC | 2 cut(s) | 218, 324 |
| Hpy188I | TCNGA | 5 cut(s) | 145, 435, 595, 656, 699 |
| Hpy188III | TCNNGA | 3 cut(s) | 40, 179, 329 |
| Hpy8I | GTNNAC | 2 cut(s) | 218, 324 |
| HpyAV | CCTTC | 3 cut(s) | 92, 562, 625 |
| HpyCH4III | ACNGT | 2 cut(s) | 245, 733 |
| HpyCH4IV | ACGT | 1 cut(s) | 272 |
| HpyCH4V | TGCA | 5 cut(s) | 121, 139, 158, 423, 531 |
| HpyF3I | CTNAG | 5 cut(s) | 330, 417, 510, 540, 671 |
| HpySE526I | ACGT | 1 cut(s) | 272 |
| Hsp92II | CATG | 2 cut(s) | 233, 535 |
| HspAI | GCGC | 1 cut(s) | 525 |
| LguI | GCTCTTC | 1 cut(s) | 635 |
| LmnI | GCTCC | 1 cut(s) | 236 |
| Lsp1109I | GCAGC | 1 cut(s) | 435 |
| LweI | GCATC | 1 cut(s) | 145 |
| MaeI | CTAG | 1 cut(s) | 741 |
| MaeII | ACGT | 1 cut(s) | 272 |
| MaeIII | GTNAC | 4 cut(s) | 37, 55, 87, 307 |
| MboII | GAAGA | 9 cut(s) | 202, 314, 394, 478, 556, 652, 712, 724, 727 |
| MlsI | TGGCCA | 1 cut(s) | 317 |
| MluCI | AATT | 5 cut(s) | 12, 76, 161, 411, 736 |
| MluNI | TGGCCA | 1 cut(s) | 317 |
| MlyI | GAGTC | 2 cut(s) | 499, 502 |
| MnlI | CCTC | 8 cut(s) | 207, 325, 346, 511, 545, 548, 571, 574 |
| Mox20I | TGGCCA | 1 cut(s) | 317 |
| MscI | TGGCCA | 1 cut(s) | 317 |
| Msp20I | TGGCCA | 1 cut(s) | 317 |
| MspI | CCGG | 1 cut(s) | 626 |
| MspR9I | CCNGG | 3 cut(s) | 626, 627, 782 |
| MvaI | CCWGG | 1 cut(s) | 782 |
| NciI | CCSGG | 2 cut(s) | 626, 627 |
| NlaIII | CATG | 2 cut(s) | 233, 535 |
| NlaIV | GGNNCC | 1 cut(s) | 771 |
| NmuCI | GTSAC | 1 cut(s) | 37 |
| NspI | RCATGY | 1 cut(s) | 535 |
| PaeR7I | CTCGAG | 1 cut(s) | 179 |
| PaqCI | CACCTGC | 1 cut(s) | 201 |
| PciSI | GCTCTTC | 1 cut(s) | 635 |
| PkrI | GCNGC | 3 cut(s) | 337, 425, 681 |
| PleI | GAGTC | 2 cut(s) | 498, 502 |
| PpsI | GAGTC | 2 cut(s) | 498, 502 |
| Psp6I | CCWGG | 1 cut(s) | 780 |
| PspGI | CCWGG | 1 cut(s) | 780 |
| PspN4I | GGNNCC | 1 cut(s) | 771 |
| PspPI | GGNCC | 1 cut(s) | 784 |
| RsaI | GTAC | 1 cut(s) | 185 |
| RsaNI | GTAC | 1 cut(s) | 184 |
| SapI | GCTCTTC | 1 cut(s) | 635 |
| SatI | GCNGC | 3 cut(s) | 336, 424, 680 |
| Sau96I | GGNCC | 1 cut(s) | 784 |
| SchI | GAGTC | 2 cut(s) | 499, 502 |
| ScrFI | CCNGG | 3 cut(s) | 626, 627, 782 |
| SfaNI | GCATC | 1 cut(s) | 145 |
| SfcI | CTRYAG | 1 cut(s) | 459 |
| Sfr274I | CTCGAG | 1 cut(s) | 179 |
| SlaI | CTCGAG | 1 cut(s) | 179 |
| SmaI | CCCGGG | 1 cut(s) | 627 |
| SmlI | CTYRAG | 1 cut(s) | 179 |
| SmoI | CTYRAG | 1 cut(s) | 179 |
| Sse9I | AATT | 5 cut(s) | 12, 76, 161, 411, 736 |
| SsiI | CCGC | 2 cut(s) | 335, 679 |
| SspMI | CTAG | 1 cut(s) | 741 |
| StyD4I | CCNGG | 3 cut(s) | 624, 625, 780 |
| StyI | CCWWGG | 1 cut(s) | 427 |
| TaaI | ACNGT | 2 cut(s) | 245, 733 |
| TaiI | ACGT | 1 cut(s) | 275 |
| TaqI | TCGA | 1 cut(s) | 180 |
| TasI | AATT | 5 cut(s) | 12, 76, 161, 411, 736 |
| TauI | GCSGC | 2 cut(s) | 338, 682 |
| TscAI | CASTG | 1 cut(s) | 303 |
| TseFI | GTSAC | 1 cut(s) | 37 |
| TseI | GCWGC | 1 cut(s) | 423 |
| Tsp45I | GTSAC | 1 cut(s) | 37 |
| TspDTI | ATGAA | 2 cut(s) | 609, 612 |
| TspMI | CCCGGG | 1 cut(s) | 625 |
| TspRI | CASTG | 1 cut(s) | 303 |
| XapI | RAATTY | 2 cut(s) | 76, 736 |
| XceI | RCATGY | 1 cut(s) | 535 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 56 |
| XhoI | CTCGAG | 1 cut(s) | 179 |
| XmaI | CCCGGG | 1 cut(s) | 625 |
| XspI | CTAG | 1 cut(s) | 741 |