Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 91 - 113 | 3.8e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 626 |
| AciI | CCGC | 3 cut(s) | 306, 350, 490 |
| AclWI | GGATC | 1 cut(s) | 200 |
| AcoI | YGGCCR | 1 cut(s) | 245 |
| AcuI | CTGAAG | 2 cut(s) | 233, 612 |
| AdeI | CACNNNGTG | 1 cut(s) | 167 |
| AfaI | GTAC | 2 cut(s) | 38, 275 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 16, 343, 626 |
| AluBI | AGCT | 1 cut(s) | 590 |
| AluI | AGCT | 1 cut(s) | 590 |
| Alw21I | GWGCWC | 1 cut(s) | 163 |
| AlwI | GGATC | 1 cut(s) | 200 |
| AoxI | GGCC | 1 cut(s) | 245 |
| ApeKI | GCWGC | 1 cut(s) | 283 |
| AspA2I | CCTAGG | 1 cut(s) | 485 |
| AspLEI | GCGC | 1 cut(s) | 429 |
| AsuHPI | GGTGA | 3 cut(s) | 106, 235, 470 |
| AvrII | CCTAGG | 1 cut(s) | 485 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 75, 108 |
| BalI | TGGCCA | 1 cut(s) | 247 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 29 |
| BbsI | GAAGAC | 1 cut(s) | 12 |
| Bbv12I | GWGCWC | 1 cut(s) | 163 |
| BbvI | GCAGC | 1 cut(s) | 270 |
| BccI | CCATC | 4 cut(s) | 439, 568, 598, 617 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 244, 278 |
| BciVI | GTATCC | 1 cut(s) | 76 |
| BfaI | CTAG | 4 cut(s) | 269, 339, 486, 549 |
| BfmI | CTRYAG | 1 cut(s) | 14 |
| BfoI | RGCGCY | 1 cut(s) | 430 |
| BfuI | GTATCC | 1 cut(s) | 76 |
| BisI | GCNGC | 1 cut(s) | 284 |
| BlnI | CCTAGG | 1 cut(s) | 485 |
| BlsI | GCNGC | 1 cut(s) | 285 |
| BmcAI | AGTACT | 1 cut(s) | 38 |
| BmiI | GGNNCC | 2 cut(s) | 413, 516 |
| BmrI | ACTGGG | 1 cut(s) | 507 |
| BmsI | GCATC | 2 cut(s) | 367, 513 |
| BmuI | ACTGGG | 1 cut(s) | 507 |
| BpiI | GAAGAC | 1 cut(s) | 12 |
| Bsa29I | ATCGAT | 1 cut(s) | 195 |
| BsaJI | CCNNGG | 1 cut(s) | 485 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 16, 343, 626 |
| Bse118I | RCCGGY | 1 cut(s) | 235 |
| Bse1I | ACTGG | 2 cut(s) | 106, 502 |
| BseCI | ATCGAT | 1 cut(s) | 195 |
| BseDI | CCNNGG | 1 cut(s) | 485 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 16, 343, 626 |
| BseMII | CTCAG | 2 cut(s) | 47, 510 |
| BseNI | ACTGG | 2 cut(s) | 106, 502 |
| BseRI | GAGGAG | 3 cut(s) | 343, 419, 569 |
| BseXI | GCAGC | 1 cut(s) | 270 |
| BshFI | GGCC | 1 cut(s) | 247 |
| BshVI | ATCGAT | 1 cut(s) | 195 |
| BsiHKAI | GWGCWC | 1 cut(s) | 163 |
| BsiSI | CCGG | 1 cut(s) | 236 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 16, 343, 626 |
| BsnI | GGCC | 1 cut(s) | 247 |
| Bsp1286I | GDGCHC | 1 cut(s) | 163 |
| Bsp143I | GATC | 3 cut(s) | 29, 192, 265 |
| BspACI | CCGC | 3 cut(s) | 306, 350, 490 |
| BspANI | GGCC | 1 cut(s) | 247 |
| BspCNI | CTCAG | 2 cut(s) | 46, 511 |
| BspDI | ATCGAT | 1 cut(s) | 195 |
| BspLI | GGNNCC | 2 cut(s) | 413, 516 |
| BspPI | GGATC | 1 cut(s) | 200 |
| BsrFI | RCCGGY | 1 cut(s) | 235 |
| BsrI | ACTGG | 2 cut(s) | 106, 502 |
| BssAI | RCCGGY | 1 cut(s) | 235 |
| BssECI | CCNNGG | 1 cut(s) | 485 |
| BssMI | GATC | 3 cut(s) | 29, 192, 265 |
| BssT1I | CCWWGG | 1 cut(s) | 485 |
| Bst6I | CTCTTC | 3 cut(s) | 30, 140, 594 |
| BstC8I | GCNNGC | 3 cut(s) | 120, 257, 369 |
| BstDEI | CTNAG | 2 cut(s) | 33, 519 |
| BstH2I | RGCGCY | 1 cut(s) | 430 |
| BstHHI | GCGC | 1 cut(s) | 429 |
| BstKTI | GATC | 3 cut(s) | 32, 195, 268 |
| BstMBI | GATC | 3 cut(s) | 29, 192, 265 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 377, 433 |
| BstSFI | CTRYAG | 1 cut(s) | 14 |
| BstV1I | GCAGC | 1 cut(s) | 270 |
| BstV2I | GAAGAC | 1 cut(s) | 12 |
| Bsu15I | ATCGAT | 1 cut(s) | 195 |
| BsuI | GTATCC | 1 cut(s) | 76 |
| BsuRI | GGCC | 1 cut(s) | 247 |
| BsuTUI | ATCGAT | 1 cut(s) | 195 |
| BtgZI | GCGATG | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 3 cut(s) | 120, 257, 369 |
| CfoI | GCGC | 1 cut(s) | 429 |
| Cfr10I | RCCGGY | 1 cut(s) | 235 |
| ClaI | ATCGAT | 1 cut(s) | 195 |
| Csp6I | GTAC | 2 cut(s) | 37, 274 |
| CviAII | CATG | 1 cut(s) | 140 |
| CviQI | GTAC | 2 cut(s) | 37, 274 |
| DdeI | CTNAG | 2 cut(s) | 33, 519 |
| DpnI | GATC | 3 cut(s) | 31, 194, 267 |
| DpnII | GATC | 3 cut(s) | 29, 192, 265 |
| DraIII | CACNNNGTG | 1 cut(s) | 167 |
| EaeI | YGGCCR | 1 cut(s) | 245 |
| Eam1104I | CTCTTC | 3 cut(s) | 30, 140, 594 |
| EarI | CTCTTC | 3 cut(s) | 30, 140, 594 |
| EciI | GGCGGA | 1 cut(s) | 505 |
| Eco130I | CCWWGG | 1 cut(s) | 485 |
| Eco57I | CTGAAG | 2 cut(s) | 233, 612 |
| EcoT14I | CCWWGG | 1 cut(s) | 485 |
| ErhI | CCWWGG | 1 cut(s) | 485 |
| FaeI | CATG | 1 cut(s) | 143 |
| FaiI | YATR | 6 cut(s) | 43, 141, 375, 441, 509, 638 |
| FatI | CATG | 1 cut(s) | 139 |
| FauI | CCCGC | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 1 cut(s) | 284 |
| Fsp4HI | GCNGC | 1 cut(s) | 284 |
| FspBI | CTAG | 4 cut(s) | 269, 339, 486, 549 |
| GlaI | GCGC | 1 cut(s) | 428 |
| GluI | GCNGC | 1 cut(s) | 284 |
| HaeII | RGCGCY | 1 cut(s) | 430 |
| HaeIII | GGCC | 1 cut(s) | 247 |
| HapII | CCGG | 1 cut(s) | 236 |
| HhaI | GCGC | 1 cut(s) | 429 |
| Hin1II | CATG | 1 cut(s) | 143 |
| Hin6I | GCGC | 1 cut(s) | 427 |
| HinP1I | GCGC | 1 cut(s) | 427 |
| HinfI | GANTC | 1 cut(s) | 443 |
| HpaII | CCGG | 1 cut(s) | 236 |
| HphI | GGTGA | 3 cut(s) | 106, 235, 470 |
| Hpy188I | TCNGA | 1 cut(s) | 213 |
| Hpy188III | TCNNGA | 2 cut(s) | 269, 518 |
| Hpy99I | CGWCG | 1 cut(s) | 70 |
| HpyAV | CCTTC | 2 cut(s) | 336, 587 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 377, 433 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 519 |
| Hsp92II | CATG | 1 cut(s) | 143 |
| HspAI | GCGC | 1 cut(s) | 427 |
| Kzo9I | GATC | 3 cut(s) | 29, 192, 265 |
| LmnI | GCTCC | 4 cut(s) | 158, 417, 520, 587 |
| Lsp1109I | GCAGC | 1 cut(s) | 270 |
| LweI | GCATC | 2 cut(s) | 367, 513 |
| MaeI | CTAG | 4 cut(s) | 269, 339, 486, 549 |
| MaeIII | GTNAC | 1 cut(s) | 315 |
| MalI | GATC | 3 cut(s) | 31, 194, 267 |
| MboI | GATC | 3 cut(s) | 29, 192, 265 |
| MboII | GAAGA | 5 cut(s) | 17, 17, 157, 226, 611 |
| MfeI | CAATTG | 1 cut(s) | 123 |
| MhlI | GDGCHC | 1 cut(s) | 163 |
| MlsI | TGGCCA | 1 cut(s) | 247 |
| MluCI | AATT | 3 cut(s) | 123, 131, 356 |
| MluNI | TGGCCA | 1 cut(s) | 247 |
| MmeI | TCCRAC | 1 cut(s) | 136 |
| Mox20I | TGGCCA | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 247 |
| MseI | TTAA | 2 cut(s) | 387, 479 |
| Msp20I | TGGCCA | 1 cut(s) | 247 |
| MspI | CCGG | 1 cut(s) | 236 |
| MunI | CAATTG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 377, 433 |
| NdeII | GATC | 3 cut(s) | 29, 192, 265 |
| NlaIII | CATG | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 2 cut(s) | 413, 516 |
| NmuCI | GTSAC | 1 cut(s) | 315 |
| PfeI | GAWTC | 1 cut(s) | 443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 626 |
| PkrI | GCNGC | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 2 cut(s) | 413, 516 |
| RsaI | GTAC | 2 cut(s) | 38, 275 |
| RsaNI | GTAC | 2 cut(s) | 37, 274 |
| SaqAI | TTAA | 2 cut(s) | 387, 479 |
| SatI | GCNGC | 1 cut(s) | 284 |
| Sau3AI | GATC | 3 cut(s) | 29, 192, 265 |
| ScaI | AGTACT | 1 cut(s) | 38 |
| SduI | GDGCHC | 1 cut(s) | 163 |
| SetI | ASST | 7 cut(s) | 21, 452, 460, 473, 487, 592, 612 |
| SfaNI | GCATC | 2 cut(s) | 367, 513 |
| SfcI | CTRYAG | 1 cut(s) | 14 |
| Sse9I | AATT | 3 cut(s) | 123, 131, 356 |
| SsiI | CCGC | 3 cut(s) | 306, 350, 490 |
| SspMI | CTAG | 4 cut(s) | 269, 339, 486, 549 |
| StyI | CCWWGG | 1 cut(s) | 485 |
| TaqI | TCGA | 4 cut(s) | 28, 195, 264, 452 |
| TaqII | GACCGA | 1 cut(s) | 377 |
| TasI | AATT | 3 cut(s) | 123, 131, 356 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 443 |
| Tru1I | TTAA | 2 cut(s) | 387, 479 |
| Tru9I | TTAA | 2 cut(s) | 387, 479 |
| TseFI | GTSAC | 1 cut(s) | 315 |
| TseI | GCWGC | 1 cut(s) | 283 |
| Tsp45I | GTSAC | 1 cut(s) | 315 |
| TspDTI | ATGAA | 3 cut(s) | 128, 456, 579 |
| TspGWI | ACGGA | 2 cut(s) | 193, 412 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 626 |
| XbaI | TCTAGA | 1 cut(s) | 268 |
| XmaJI | CCTAGG | 1 cut(s) | 485 |
| XspI | CTAG | 4 cut(s) | 269, 339, 486, 549 |
| ZrmI | AGTACT | 1 cut(s) | 38 |