ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 77 - 116 | 1e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 134 |
| AccB1I | GGYRCC | 2 cut(s) | 4, 134 |
| AccBSI | CCGCTC | 1 cut(s) | 289 |
| AciI | CCGC | 2 cut(s) | 17, 289 |
| AclWI | GGATC | 2 cut(s) | 270, 368 |
| AcsI | RAATTY | 2 cut(s) | 244, 275 |
| AfaI | GTAC | 3 cut(s) | 97, 136, 235 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 235, 257, 337 |
| AgsI | TTSAA | 1 cut(s) | 68 |
| AjnI | CCWGG | 2 cut(s) | 250, 306 |
| AluBI | AGCT | 2 cut(s) | 41, 71 |
| AluI | AGCT | 2 cut(s) | 41, 71 |
| AlwI | GGATC | 2 cut(s) | 270, 368 |
| AoxI | GGCC | 1 cut(s) | 386 |
| ApoI | RAATTY | 2 cut(s) | 244, 275 |
| Asp718I | GGTACC | 1 cut(s) | 134 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 253, 320 |
| BanI | GGYRCC | 2 cut(s) | 4, 134 |
| BciT130I | CCWGG | 2 cut(s) | 252, 308 |
| BfaI | CTAG | 1 cut(s) | 356 |
| BisI | GCNGC | 1 cut(s) | 18 |
| BlsI | GCNGC | 1 cut(s) | 19 |
| Bme1390I | CCNGG | 2 cut(s) | 252, 308 |
| BmiI | GGNNCC | 2 cut(s) | 6, 136 |
| BmrFI | CCNGG | 2 cut(s) | 252, 308 |
| BsaJI | CCNNGG | 2 cut(s) | 83, 251 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 79, 109, 114, 144 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 235, 257, 337 |
| BseBI | CCWGG | 2 cut(s) | 252, 308 |
| BseDI | CCNNGG | 2 cut(s) | 83, 251 |
| BseGI | GGATG | 1 cut(s) | 173 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 235, 257, 337 |
| BseMII | CTCAG | 2 cut(s) | 147, 405 |
| BseRI | GAGGAG | 1 cut(s) | 173 |
| BseYI | CCCAGC | 1 cut(s) | 20 |
| BshFI | GGCC | 1 cut(s) | 388 |
| BshNI | GGYRCC | 2 cut(s) | 4, 134 |
| BsiSI | CCGG | 1 cut(s) | 296 |
| BsiWI | CGTACG | 1 cut(s) | 233 |
| BslFI | GGGAC | 1 cut(s) | 65 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 235, 257, 337 |
| BsmFI | GGGAC | 1 cut(s) | 65 |
| BsnI | GGCC | 1 cut(s) | 388 |
| Bsp143I | GATC | 3 cut(s) | 262, 321, 360 |
| Bsp19I | CCATGG | 1 cut(s) | 83 |
| BspACI | CCGC | 2 cut(s) | 17, 289 |
| BspANI | GGCC | 1 cut(s) | 388 |
| BspCNI | CTCAG | 2 cut(s) | 148, 406 |
| BspLI | GGNNCC | 2 cut(s) | 6, 136 |
| BspPI | GGATC | 2 cut(s) | 270, 368 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 134 |
| BsrBI | CCGCTC | 1 cut(s) | 289 |
| BssECI | CCNNGG | 2 cut(s) | 83, 251 |
| BssMI | GATC | 3 cut(s) | 262, 321, 360 |
| BssT1I | CCWWGG | 1 cut(s) | 83 |
| Bst2UI | CCWGG | 2 cut(s) | 252, 308 |
| Bst4CI | ACNGT | 4 cut(s) | 9, 55, 238, 406 |
| BstDEI | CTNAG | 2 cut(s) | 156, 414 |
| BstDSI | CCRYGG | 1 cut(s) | 83 |
| BstEII | GGTNACC | 1 cut(s) | 326 |
| BstF5I | GGATG | 1 cut(s) | 173 |
| BstKTI | GATC | 3 cut(s) | 265, 324, 363 |
| BstMBI | GATC | 3 cut(s) | 262, 321, 360 |
| BstNI | CCWGG | 2 cut(s) | 252, 308 |
| BstPI | GGTNACC | 1 cut(s) | 326 |
| BstSCI | CCNGG | 2 cut(s) | 250, 306 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 314 |
| BsuRI | GGCC | 1 cut(s) | 388 |
| BtgI | CCRYGG | 1 cut(s) | 83 |
| BtsCI | GGATG | 1 cut(s) | 173 |
| Csp6I | GTAC | 3 cut(s) | 96, 135, 234 |
| CviAII | CATG | 2 cut(s) | 74, 84 |
| CviJI | RGCY | 5 cut(s) | 20, 41, 71, 388, 413 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 41, 71, 388, 413 |
| CviQI | GTAC | 3 cut(s) | 96, 135, 234 |
| DdeI | CTNAG | 2 cut(s) | 156, 414 |
| DpnI | GATC | 3 cut(s) | 264, 323, 362 |
| DpnII | GATC | 3 cut(s) | 262, 321, 360 |
| Eco130I | CCWWGG | 1 cut(s) | 83 |
| Eco91I | GGTNACC | 1 cut(s) | 326 |
| EcoO65I | GGTNACC | 1 cut(s) | 326 |
| EcoRII | CCWGG | 2 cut(s) | 250, 306 |
| EcoT14I | CCWWGG | 1 cut(s) | 83 |
| EcoT22I | ATGCAT | 1 cut(s) | 194 |
| ErhI | CCWWGG | 1 cut(s) | 83 |
| FaeI | CATG | 2 cut(s) | 77, 87 |
| FaiI | YATR | 9 cut(s) | 32, 75, 85, 128, 141, 190, 210, 285, 343 |
| FaqI | GGGAC | 1 cut(s) | 65 |
| FatI | CATG | 2 cut(s) | 73, 83 |
| Fnu4HI | GCNGC | 1 cut(s) | 18 |
| FokI | GGATG | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 1 cut(s) | 18 |
| FspBI | CTAG | 1 cut(s) | 356 |
| GluI | GCNGC | 1 cut(s) | 18 |
| GsaI | CCCAGC | 1 cut(s) | 24 |
| HaeIII | GGCC | 1 cut(s) | 388 |
| HapII | CCGG | 1 cut(s) | 296 |
| Hin1II | CATG | 2 cut(s) | 77, 87 |
| HinfI | GANTC | 4 cut(s) | 78, 147, 183, 377 |
| HpaII | CCGG | 1 cut(s) | 296 |
| HphI | GGTGA | 3 cut(s) | 67, 253, 320 |
| Hpy166II | GTNNAC | 1 cut(s) | 98 |
| Hpy188I | TCNGA | 2 cut(s) | 230, 382 |
| Hpy188III | TCNNGA | 1 cut(s) | 151 |
| Hpy8I | GTNNAC | 1 cut(s) | 98 |
| Hpy99I | CGWCG | 1 cut(s) | 234 |
| HpyCH4III | ACNGT | 4 cut(s) | 9, 55, 238, 406 |
| HpyCH4IV | ACGT | 2 cut(s) | 36, 232 |
| HpyCH4V | TGCA | 1 cut(s) | 192 |
| HpyF3I | CTNAG | 2 cut(s) | 156, 414 |
| HpySE526I | ACGT | 2 cut(s) | 36, 232 |
| Hsp92II | CATG | 2 cut(s) | 77, 87 |
| KpnI | GGTACC | 1 cut(s) | 138 |
| Kzo9I | GATC | 3 cut(s) | 262, 321, 360 |
| LmnI | GCTCC | 1 cut(s) | 160 |
| LpnPI | CCDG | 9 cut(s) | 6, 114, 149, 237, 264, 293, 309, 320, 359 |
| MaeI | CTAG | 1 cut(s) | 356 |
| MaeII | ACGT | 2 cut(s) | 36, 232 |
| MaeIII | GTNAC | 1 cut(s) | 326 |
| MalI | GATC | 3 cut(s) | 264, 323, 362 |
| MbiI | CCGCTC | 1 cut(s) | 289 |
| MboI | GATC | 3 cut(s) | 262, 321, 360 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MluCI | AATT | 2 cut(s) | 244, 275 |
| MlyI | GAGTC | 3 cut(s) | 87, 156, 371 |
| MmeI | TCCRAC | 1 cut(s) | 253 |
| MnlI | CCTC | 5 cut(s) | 81, 97, 116, 151, 378 |
| Mph1103I | ATGCAT | 1 cut(s) | 194 |
| MseI | TTAA | 1 cut(s) | 279 |
| MslI | CAYNNNNRTG | 2 cut(s) | 197, 340 |
| MspI | CCGG | 1 cut(s) | 296 |
| MspR9I | CCNGG | 2 cut(s) | 252, 308 |
| MvaI | CCWGG | 2 cut(s) | 252, 308 |
| NcoI | CCATGG | 1 cut(s) | 83 |
| NdeII | GATC | 3 cut(s) | 262, 321, 360 |
| NlaIII | CATG | 2 cut(s) | 77, 87 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 136 |
| NmuCI | GTSAC | 1 cut(s) | 326 |
| NsiI | ATGCAT | 1 cut(s) | 194 |
| PfeI | GAWTC | 1 cut(s) | 183 |
| Pfl23II | CGTACG | 1 cut(s) | 233 |
| PkrI | GCNGC | 1 cut(s) | 19 |
| PleI | GAGTC | 3 cut(s) | 86, 155, 371 |
| PpsI | GAGTC | 3 cut(s) | 86, 155, 371 |
| Psp6I | CCWGG | 2 cut(s) | 250, 306 |
| PspEI | GGTNACC | 1 cut(s) | 326 |
| PspFI | CCCAGC | 1 cut(s) | 20 |
| PspGI | CCWGG | 2 cut(s) | 250, 306 |
| PspLI | CGTACG | 1 cut(s) | 233 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 136 |
| RsaI | GTAC | 3 cut(s) | 97, 136, 235 |
| RsaNI | GTAC | 3 cut(s) | 96, 135, 234 |
| RseI | CAYNNNNRTG | 2 cut(s) | 197, 340 |
| SaqAI | TTAA | 1 cut(s) | 279 |
| SatI | GCNGC | 1 cut(s) | 18 |
| Sau3AI | GATC | 3 cut(s) | 262, 321, 360 |
| SchI | GAGTC | 3 cut(s) | 87, 156, 371 |
| ScrFI | CCNGG | 2 cut(s) | 252, 308 |
| SetI | ASST | 8 cut(s) | 39, 43, 73, 92, 108, 127, 140, 235 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 197, 340 |
| Sse9I | AATT | 2 cut(s) | 244, 275 |
| SsiI | CCGC | 2 cut(s) | 17, 289 |
| SspMI | CTAG | 1 cut(s) | 356 |
| StyD4I | CCNGG | 2 cut(s) | 250, 306 |
| StyI | CCWWGG | 1 cut(s) | 83 |
| TaaI | ACNGT | 4 cut(s) | 9, 55, 238, 406 |
| TaiI | ACGT | 2 cut(s) | 39, 235 |
| TaqII | GACCGA | 1 cut(s) | 314 |
| TasI | AATT | 2 cut(s) | 244, 275 |
| TauI | GCSGC | 1 cut(s) | 20 |
| TfiI | GAWTC | 1 cut(s) | 183 |
| Tru1I | TTAA | 1 cut(s) | 279 |
| Tru9I | TTAA | 1 cut(s) | 279 |
| TseFI | GTSAC | 1 cut(s) | 326 |
| Tsp45I | GTSAC | 1 cut(s) | 326 |
| TspDTI | ATGAA | 3 cut(s) | 156, 204, 363 |
| XapI | RAATTY | 2 cut(s) | 244, 275 |
| XspI | CTAG | 1 cut(s) | 356 |
| Zsp2I | ATGCAT | 1 cut(s) | 194 |