Rh1AG231300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000022
Physical Location & Seq
Reverse (-)
43864399 .. 43867774
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG231300.1

Sequence Viewer

Length: 1686 bp
ATGGAAGACTTAGTTGGCCGTTTTGTAAACAACCTCGCCCTCACCGATGAGGAAAAGTTCGTTCTGGATTCTGATGTGGGGGCTACTAGACAAACCAGGCATTTGTTGGTAGGTCTGGTCCTCAGCCCAAAACCCATTTGCAGAGGAGGACTGCTTAAGATCTTCAGGAATGTCTGGAAAGATAACGGCCTTCGTGTGGGTGGTCTGGGTGAAGGCAAGTTGATTTTTGAAGTCTCCTCTGAAGTAATCAAGTCTAGGATCTTAAGGGGGGGTCCTTGGTCTTTCGATAAAGCTCTGTTGGTGTTGGCTGATGCGAATGGTAGGGGTCCCCCGACTTCGATCCCCTTAACAACGGGTTATTTCTGGGTACAAGTTCATGGCCTCGACCCTGAAGATATGACTGAGGAGGTTGGTCAACTTGCAGGGAGATGTCTTGGCCAATACAGAGGGACTGATCTTGGTGAAGCTGGAGTTTGTTTAACTGATTACTTACGCGTCAGAGTGGGGATTGACGTCTTCAAGCCTATCAAGCGCTTTGTCAAGCTCAAAATCAATAATAGGTCGATGTTTTATGAAATTAGGTATGAAAAACTCCCCTTTTTCTGTTTCATTTGTGGGCGACTTGATCACGTTGAAGGGGATTGCAATAAACGAGATAGTTCTTTGTGTATCACCCAACAAAGGCAGTTTGGTGATTTCCTAAGAGCAGAGCATGAAGGACCTATGTTCAACAACCGCCATCAACAACGTTTCTTTGAGCCAATGAAACCGGCTTGGTCGTTGAAGGCACCGGAGTTTGTTGATTCTGTCTCTGGTTTTGCTAGATCAAGAGAAGATTTCGAAAAGGACCAGGCTCATGAGTACTGTTCAACCGGTGAACTCCCTAATTGTGCTACCACTCAGCGGGAAACCGGAGACGTGTTGGCAAATTCAAGGCAAAAGAGACGTCGCATGGAAACAATACAAGCGACAGTATCCGAGGTACCCCTTCGGTCATGCTTGGAGATCTGCAACCCTGAAGTAAGTGTTGAGACTAGTTGTGGGGTCGAAGTTGACGCTAGAGAAGAAGCCAGGGTGGAGGTTAGATACAACAATGCCTCATCTCTGTTTTCGGCGGCGGTGAGGGGTGCTACTGACTTGACAAGTATGGCTACCCCATGTGACCCGGGTACGATTGACATACTTAAGGTATGTAATTCCTATGTTCAAGAAAAGTACCTCAATCTTCGAGATATCGAAATCCAAAGCTCCCCAGACCTGTCGATAGCATTAATGGGGGATGGGTCTGCTAAAGGAAAGGGTGGGGGTGATTGGGAGCAATCTGTGGAGGGGAGCAAGTTGACTGACATTTCCCTGTTTGGACATCATTGTCACTTTCCACCTAAAGTGTTGAATAGGGTGGATTGGAAGTCAACTTTAAAAGAGGCAGCTACAGGTGGACTGGCTGGAGATCAGGGGGGTCAATCACAGGCCGGGATGGCCCCAGAAATTCAAAGGCCTACTACAAAGAAGGAAGCTACCACAAAGAAGGAAGCGAAAACTAAATGGGGAGTTAGGGTTGGTGGCAATAAGAAGAAGGGGGTTCCTAATGTTGCACAGTTCCCAAAAGACACTGGTGTGAGTAATGGACGTACTCTAAATCGTTCCTCCGTGATGGGTCCGGTCTTGACCCATCACGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

561

Amino Acids

62.08

Weight (kDa)

8.09

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 170 - 217 4e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1368
AatII GACGTC 2 cut(s) 516, 949
Acc65I GGTACC 1 cut(s) 982
AccB1I GGYRCC 2 cut(s) 787, 982
AccII CGCG 1 cut(s) 495
AciI CCGC 4 cut(s) 736, 904, 1115, 1118
AclI AACGTT 1 cut(s) 748
AclWI GGATC 2 cut(s) 266, 334
AcoI YGGCCR 2 cut(s) 16, 436
AcsI RAATTY 2 cut(s) 928, 1488
AcuI CTGAAG 4 cut(s) 148, 261, 411, 1038
AcyI GRCGYC 2 cut(s) 513, 946
AfaI GTAC 6 cut(s) 369, 863, 984, 1171, 1217, 1633
AfeI AGCGCT 1 cut(s) 533
AfiI CCNNNNNNNGG 3 cut(s) 196, 681, 903
AflII CTTAAG 3 cut(s) 155, 262, 1184
AflIII ACRYGT 2 cut(s) 493, 918
AgeI ACCGGT 1 cut(s) 872
AhlI ACTAGT 1 cut(s) 1034
AjiI CACGTC 1 cut(s) 919
AjnI CCWGG 3 cut(s) 95, 849, 1070
AjuI GAANNNNNNNTTGG 1 cut(s) 29
AleI CACNNNNGTG 1 cut(s) 1616
AluBI AGCT 6 cut(s) 293, 467, 544, 1248, 1430, 1517
AluI AGCT 6 cut(s) 293, 467, 544, 1248, 1430, 1517
Alw26I GTCTC 5 cut(s) 238, 814, 909, 937, 1025
AlwI GGATC 2 cut(s) 266, 334
Ama87I CYCGRG 1 cut(s) 1165
Aor51HI AGCGCT 1 cut(s) 533
AoxI GGCC 7 cut(s) 16, 187, 379, 436, 1470, 1479, 1496
ApeKI GCWGC 1 cut(s) 1427
ApoI RAATTY 2 cut(s) 928, 1488
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AseI ATTAAT 1 cut(s) 1271
AsiGI ACCGGT 1 cut(s) 872
Asp718I GGTACC 1 cut(s) 982
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 7 cut(s) 118, 272, 326, 719, 847, 1480, 1658
AsuC2I CCSGG 3 cut(s) 1166, 1167, 1474
AsuHPI GGTGA 8 cut(s) 34, 221, 473, 664, 704, 887, 1132, 1319
AsuII TTCGAA 1 cut(s) 840
AvaI CYCGRG 1 cut(s) 1165
AvaII GGWCC 6 cut(s) 118, 272, 326, 719, 847, 1658
BalI TGGCCA 1 cut(s) 438
BanI GGYRCC 2 cut(s) 787, 982
BauI CACGAG 1 cut(s) 1676
BbsI GAAGAC 2 cut(s) 12, 508
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 1439
BccI CCATC 5 cut(s) 747, 1274, 1471, 1648, 1680
BceAI ACGGC 2 cut(s) 3, 202
BciT130I CCWGG 3 cut(s) 97, 851, 1072
BciVI GTATCC 1 cut(s) 985
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 3 cut(s) 1166, 1167, 1474
BcoDI GTCTC 5 cut(s) 238, 814, 909, 937, 1025
BcuI ACTAGT 1 cut(s) 1034
BfaI CTAG 5 cut(s) 87, 255, 822, 1035, 1059
BfmI CTRYAG 1 cut(s) 1431
BfoI RGCGCY 1 cut(s) 535
BfrI CTTAAG 3 cut(s) 155, 262, 1184
BfuI GTATCC 1 cut(s) 985
BglI GCCNNNNNGGC 1 cut(s) 1478
BglII AGATCT 2 cut(s) 159, 1005
BisI GCNGC 2 cut(s) 1116, 1428
BlsI GCNGC 2 cut(s) 1117, 1429
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 6 cut(s) 97, 851, 1072, 1166, 1167, 1474
Bme18I GGWCC 6 cut(s) 118, 272, 326, 719, 847, 1658
BmeT110I CYCGRG 1 cut(s) 1165
BmgBI CACGTC 1 cut(s) 919
BmgT120I GGNCC 7 cut(s) 118, 272, 326, 719, 847, 1480, 1658
BmiI GGNNCC 8 cut(s) 273, 327, 328, 789, 984, 1482, 1584, 1659
BmrFI CCNGG 6 cut(s) 97, 851, 1072, 1166, 1167, 1474
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 2 cut(s) 12, 508
BpmI CTGGAG 2 cut(s) 489, 1467
Bpu10I CCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 840
BpuMI CCSGG 3 cut(s) 1166, 1167, 1474
BsaHI GRCGYC 2 cut(s) 513, 946
BsaJI CCNNGG 4 cut(s) 275, 978, 1071, 1165
BsaWI WCCGGW 4 cut(s) 790, 872, 911, 1660
BsaXI ACNNNNNCTCC 2 cut(s) 1542, 1572
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 681, 903
Bse118I RCCGGY 2 cut(s) 769, 872
Bse1I ACTGG 2 cut(s) 1446, 1618
BseBI CCWGG 3 cut(s) 97, 851, 1072
BseDI CCNNGG 4 cut(s) 275, 978, 1071, 1165
BseGI GGATG 2 cut(s) 1285, 1482
BseLI CCNNNNNNNGG 3 cut(s) 196, 681, 903
BseMII CTCAG 3 cut(s) 136, 393, 914
BseNI ACTGG 2 cut(s) 1446, 1618
BseRI GAGGAG 3 cut(s) 159, 226, 419
BseXI GCAGC 1 cut(s) 1439
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 7 cut(s) 18, 189, 381, 438, 1472, 1481, 1498
BshNI GGYRCC 2 cut(s) 787, 982
BshTI ACCGGT 1 cut(s) 872
BsiHKCI CYCGRG 1 cut(s) 1165
BsiSI CCGG 7 cut(s) 770, 791, 873, 912, 1166, 1473, 1661
BslFI GGGAC 2 cut(s) 312, 463
BslI CCNNNNNNNGG 3 cut(s) 196, 681, 903
BsmAI GTCTC 5 cut(s) 238, 814, 909, 937, 1025
BsmBI CGTCTC 2 cut(s) 909, 937
BsmFI GGGAC 2 cut(s) 312, 463
BsnI GGCC 7 cut(s) 18, 189, 381, 438, 1472, 1481, 1498
BsoBI CYCGRG 1 cut(s) 1165
Bsp119I TTCGAA 1 cut(s) 840
Bsp143I GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
BspACI CCGC 4 cut(s) 736, 904, 1115, 1118
BspANI GGCC 7 cut(s) 18, 189, 381, 438, 1472, 1481, 1498
BspCNI CTCAG 3 cut(s) 135, 394, 913
BspFNI CGCG 1 cut(s) 495
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 8 cut(s) 273, 327, 328, 789, 984, 1482, 1584, 1659
BspPI GGATC 2 cut(s) 266, 334
BspT104I TTCGAA 1 cut(s) 840
BspT107I GGYRCC 2 cut(s) 787, 982
BspTI CTTAAG 3 cut(s) 155, 262, 1184
BsrFI RCCGGY 2 cut(s) 769, 872
BsrI ACTGG 2 cut(s) 1446, 1618
BssAI RCCGGY 2 cut(s) 769, 872
BssECI CCNNGG 4 cut(s) 275, 978, 1071, 1165
BssMI GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
BssNI GRCGYC 2 cut(s) 513, 946
BssSI CACGAG 1 cut(s) 1676
BssT1I CCWWGG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 1676
Bst2UI CCWGG 3 cut(s) 97, 851, 1072
Bst4CI ACNGT 3 cut(s) 866, 973, 1599
BstACI GRCGYC 2 cut(s) 513, 946
BstAFI CTTAAG 3 cut(s) 155, 262, 1184
BstBI TTCGAA 1 cut(s) 840
BstDEI CTNAG 5 cut(s) 10, 122, 402, 701, 900
BstF5I GGATG 2 cut(s) 1285, 1482
BstFNI CGCG 1 cut(s) 495
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 8 cut(s) 162, 261, 342, 457, 628, 827, 1008, 1453
BstMAI GTCTC 5 cut(s) 238, 814, 909, 937, 1025
BstMBI GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
BstMWI GCNNNNNNNGC 2 cut(s) 529, 1478
BstNI CCWGG 3 cut(s) 97, 851, 1072
BstSCI CCNGG 6 cut(s) 95, 849, 1070, 1164, 1165, 1472
BstSFI CTRYAG 1 cut(s) 1431
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 1439
BstV2I GAAGAC 2 cut(s) 12, 508
BstX2I RGATCY 3 cut(s) 159, 258, 1005
BstYI RGATCY 3 cut(s) 159, 258, 1005
BsuI GTATCC 1 cut(s) 985
BsuRI GGCC 7 cut(s) 18, 189, 381, 438, 1472, 1481, 1498
BtrI CACGTC 1 cut(s) 919
BtsCI GGATG 2 cut(s) 1285, 1482
BtsIMutI CAGTG 1 cut(s) 1611
CciI TCATGA 1 cut(s) 856
CfoI GCGC 1 cut(s) 534
Cfr10I RCCGGY 2 cut(s) 769, 872
Cfr13I GGNCC 7 cut(s) 118, 272, 326, 719, 847, 1480, 1658
Cfr9I CCCGGG 1 cut(s) 1165
CseI GACGC 2 cut(s) 484, 1064
Csp6I GTAC 6 cut(s) 368, 862, 983, 1170, 1216, 1632
CspAI ACCGGT 1 cut(s) 872
CviAII CATG 7 cut(s) 377, 713, 857, 952, 996, 1158, 1683
CviQI GTAC 6 cut(s) 368, 862, 983, 1170, 1216, 1632
DdeI CTNAG 5 cut(s) 10, 122, 402, 701, 900
DpnI GATC 8 cut(s) 161, 260, 341, 456, 627, 826, 1007, 1452
DpnII GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
DraI TTTAAA 1 cut(s) 1419
DrdI GACNNNNNNGTC 1 cut(s) 1368
DseDI GACNNNNNNGTC 1 cut(s) 1368
EaeI YGGCCR 2 cut(s) 16, 436
Eco130I CCWWGG 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 1498
Eco32I GATATC 1 cut(s) 1234
Eco47I GGWCC 6 cut(s) 118, 272, 326, 719, 847, 1658
Eco47III AGCGCT 1 cut(s) 533
Eco57I CTGAAG 4 cut(s) 148, 261, 411, 1038
Eco88I CYCGRG 1 cut(s) 1165
EcoO109I RGGNCCY 3 cut(s) 272, 326, 719
EcoRII CCWGG 3 cut(s) 95, 849, 1070
EcoRV GATATC 1 cut(s) 1234
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
Esp3I CGTCTC 2 cut(s) 909, 937
FaeI CATG 7 cut(s) 380, 716, 860, 955, 999, 1161, 1686
FaqI GGGAC 2 cut(s) 312, 463
FatI CATG 7 cut(s) 376, 712, 856, 951, 995, 1157, 1682
FauI CCCGC 1 cut(s) 897
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 1116, 1428
FokI GGATG 2 cut(s) 1292, 1489
Fsp4HI GCNGC 2 cut(s) 1116, 1428
FspBI CTAG 5 cut(s) 87, 255, 822, 1035, 1059
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 1116, 1428
GsuI CTGGAG 2 cut(s) 489, 1467
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 7 cut(s) 18, 189, 381, 438, 1472, 1481, 1498
HapII CCGG 7 cut(s) 770, 791, 873, 912, 1166, 1473, 1661
HgaI GACGC 2 cut(s) 484, 1064
HhaI GCGC 1 cut(s) 534
Hin1I GRCGYC 2 cut(s) 513, 946
Hin1II CATG 7 cut(s) 380, 716, 860, 955, 999, 1161, 1686
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 4 cut(s) 416, 1054, 1341, 1413
HindII GTYRAC 4 cut(s) 416, 1054, 1341, 1413
HinfI GANTC 2 cut(s) 68, 803
HpaII CCGG 7 cut(s) 770, 791, 873, 912, 1166, 1473, 1661
HphI GGTGA 8 cut(s) 34, 221, 473, 664, 704, 887, 1132, 1319
Hpy166II GTNNAC 7 cut(s) 28, 416, 878, 1054, 1341, 1413, 1439
Hpy188I TCNGA 4 cut(s) 73, 241, 500, 979
Hpy188III TCNNGA 9 cut(s) 65, 166, 175, 828, 857, 1208, 1229, 1666, 1676
Hpy8I GTNNAC 7 cut(s) 28, 416, 878, 1054, 1341, 1413, 1439
Hpy99I CGWCG 1 cut(s) 951
HpyAV CCTTC 9 cut(s) 200, 206, 629, 710, 778, 998, 1504, 1522, 1570
HpyCH4III ACNGT 3 cut(s) 866, 973, 1599
HpyCH4IV ACGT 6 cut(s) 513, 630, 748, 918, 946, 1630
HpyCH4V TGCA 5 cut(s) 141, 422, 645, 1011, 1595
HpyF10VI GCNNNNNNNGC 2 cut(s) 529, 1478
HpyF3I CTNAG 5 cut(s) 10, 122, 402, 701, 900
HpySE526I ACGT 6 cut(s) 513, 630, 748, 918, 946, 1630
Hsp92I GRCGYC 2 cut(s) 513, 946
Hsp92II CATG 7 cut(s) 380, 716, 860, 955, 999, 1161, 1686
HspAI GCGC 1 cut(s) 532
KflI GGGWCCC 1 cut(s) 326
KpnI GGTACC 1 cut(s) 986
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
LmnI GCTCC 3 cut(s) 1253, 1315, 1332
Lsp1109I GCAGC 1 cut(s) 1439
LweI GCATC 1 cut(s) 301
MaeI CTAG 5 cut(s) 87, 255, 822, 1035, 1059
MaeII ACGT 6 cut(s) 513, 630, 748, 918, 946, 1630
MaeIII GTNAC 2 cut(s) 1160, 1370
MalI GATC 8 cut(s) 161, 260, 341, 456, 627, 826, 1007, 1452
MboI GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
MboII GAAGA 8 cut(s) 17, 154, 404, 508, 845, 1076, 1217, 1585
MflI RGATCY 3 cut(s) 159, 258, 1005
MlsI TGGCCA 1 cut(s) 438
MluCI AATT 5 cut(s) 576, 886, 928, 1195, 1488
MluI ACGCGT 1 cut(s) 493
MluNI TGGCCA 1 cut(s) 438
Mox20I TGGCCA 1 cut(s) 438
MscI TGGCCA 1 cut(s) 438
MseI TTAA 7 cut(s) 156, 263, 347, 479, 1185, 1271, 1418
MslI CAYNNNNRTG 1 cut(s) 1616
Msp20I TGGCCA 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 904
MspCI CTTAAG 3 cut(s) 155, 262, 1184
MspI CCGG 7 cut(s) 770, 791, 873, 912, 1166, 1473, 1661
MspR9I CCNGG 6 cut(s) 97, 851, 1072, 1166, 1167, 1474
MvaI CCWGG 3 cut(s) 97, 851, 1072
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 529, 1478
NciI CCSGG 3 cut(s) 1166, 1167, 1474
NdeII GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
NlaIII CATG 7 cut(s) 380, 716, 860, 955, 999, 1161, 1686
NlaIV GGNNCC 8 cut(s) 273, 327, 328, 789, 984, 1482, 1584, 1659
NmuCI GTSAC 2 cut(s) 1160, 1370
NspV TTCGAA 1 cut(s) 840
OliI CACNNNNGTG 1 cut(s) 1616
PagI TCATGA 1 cut(s) 856
PceI AGGCCT 1 cut(s) 1498
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 68, 803
PinAI ACCGGT 1 cut(s) 872
PkrI GCNGC 2 cut(s) 1117, 1429
PpuMI RGGWCCY 3 cut(s) 272, 326, 719
PshBI ATTAAT 1 cut(s) 1271
Psp1406I AACGTT 1 cut(s) 748
Psp5II RGGWCCY 3 cut(s) 272, 326, 719
Psp6I CCWGG 3 cut(s) 95, 849, 1070
PspGI CCWGG 3 cut(s) 95, 849, 1070
PspN4I GGNNCC 8 cut(s) 273, 327, 328, 789, 984, 1482, 1584, 1659
PspPI GGNCC 7 cut(s) 118, 272, 326, 719, 847, 1480, 1658
PspPPI RGGWCCY 3 cut(s) 272, 326, 719
PsuI RGATCY 3 cut(s) 159, 258, 1005
RsaI GTAC 6 cut(s) 369, 863, 984, 1171, 1217, 1633
RsaNI GTAC 6 cut(s) 368, 862, 983, 1170, 1216, 1632
RseI CAYNNNNRTG 1 cut(s) 1616
SaqAI TTAA 7 cut(s) 156, 263, 347, 479, 1185, 1271, 1418
SatI GCNGC 2 cut(s) 1116, 1428
Sau3AI GATC 8 cut(s) 159, 258, 339, 454, 625, 824, 1005, 1450
Sau96I GGNCC 7 cut(s) 118, 272, 326, 719, 847, 1480, 1658
ScaI AGTACT 1 cut(s) 863
ScrFI CCNGG 6 cut(s) 97, 851, 1072, 1166, 1167, 1474
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 1431
SfiI GGCCNNNNNGGCC 1 cut(s) 1478
SfuI TTCGAA 1 cut(s) 840
SinI GGWCC 6 cut(s) 118, 272, 326, 719, 847, 1658
SmaI CCCGGG 1 cut(s) 1167
SmiMI CAYNNNNRTG 1 cut(s) 1616
SmlI CTYRAG 3 cut(s) 155, 262, 1184
SmoI CTYRAG 3 cut(s) 155, 262, 1184
SpeI ACTAGT 1 cut(s) 1034
Sse9I AATT 5 cut(s) 576, 886, 928, 1195, 1488
SseBI AGGCCT 1 cut(s) 1498
SsiI CCGC 4 cut(s) 736, 904, 1115, 1118
SspMI CTAG 5 cut(s) 87, 255, 822, 1035, 1059
StuI AGGCCT 1 cut(s) 1498
StyD4I CCNGG 6 cut(s) 95, 849, 1070, 1164, 1165, 1472
StyI CCWWGG 1 cut(s) 275
TaaI ACNGT 3 cut(s) 866, 973, 1599
TaiI ACGT 6 cut(s) 516, 633, 751, 921, 949, 1633
TaqI TCGA 9 cut(s) 285, 338, 384, 563, 840, 1047, 1228, 1236, 1262
TaqII GACCGA 1 cut(s) 981
TasI AATT 5 cut(s) 576, 886, 928, 1195, 1488
TatI WGTACW 1 cut(s) 861
TauI GCSGC 1 cut(s) 1118
TfiI GAWTC 2 cut(s) 68, 803
Tru1I TTAA 7 cut(s) 156, 263, 347, 479, 1185, 1271, 1418
Tru9I TTAA 7 cut(s) 156, 263, 347, 479, 1185, 1271, 1418
TscAI CASTG 1 cut(s) 1618
TseFI GTSAC 2 cut(s) 1160, 1370
TseI GCWGC 1 cut(s) 1427
Tsp45I GTSAC 2 cut(s) 1160, 1370
TspDTI ATGAA 6 cut(s) 365, 588, 598, 600, 729, 779
TspGWI ACGGA 1 cut(s) 1639
TspMI CCCGGG 1 cut(s) 1165
TspRI CASTG 1 cut(s) 1618
Vha464I CTTAAG 3 cut(s) 155, 262, 1184
VpaK11BI GGWCC 6 cut(s) 118, 272, 326, 719, 847, 1658
VspI ATTAAT 1 cut(s) 1271
XapI RAATTY 2 cut(s) 928, 1488
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmaI CCCGGG 1 cut(s) 1165
XspI CTAG 5 cut(s) 87, 255, 822, 1035, 1059
ZraI GACGTC 2 cut(s) 514, 947
ZrmI AGTACT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.