FvH4_3g23592

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000022
Physical Location & Seq
Reverse (-)
16688938 .. 16692822
3885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23592.t1

Sequence Viewer

Length: 1962 bp
ATGGCCAGCACCGCGGCGCTCGAAGACGGCCGACGCTTGAACCCTGACCGGCTCGCCAGTTGGAACAGCCAACGTGTGGGAGCTAGTGCTCGTGTGGTTCTTCTCAAGAATGGAAGAACTAGTTGGCCGTTTTGCAAACAATTTGTTCTAGAATCTGATAGTGATGGTGCTAGACAAACCAGACATTTACTGGTTGGTCAGGTTCTGAGCCGGAAGCCCATTTGCAGAGGAGGTCTTCTAAAGATTTTCAAGAATGTTTGGAAAGATAATGGCCTTCGTGTTGGTGGTTTGGGTGATGGCAAACTGATCTTTGAAGTCTCCTCTGAAGCTATCAAAGCCAGGATATTAAAAGGTTGTCCTTGGTCCTTTGATAAAGCTTTAATGGTGTTAGCTGATGCCAATGGAATGGGTAGCCTGACTTCAATCCCATTGACAGTGGAAAACTTCTGGGTACAAGTTCATGGCCTTGATCCTGATGATATGACAATCGGAGTTGGAAAGCTTGCTGACAGATGCCTAGGCCATTACAGATGGACTGACCCTGGTGATGAGGGGGACCCGGTTCATGGGGTCGGGTCAAGTGGGGAGCTTCCCAATGGGACTTCCTCCCAACGGGAAACAGGGGTCCTACTGTCAATTCCAAGACAAAAGAGACGTCGCATTGGAGAAAAGCAGGTTATAATCTCTACAAAGCCACATGGGTCAAGTATGGAGATTTGTACCAGAGAAGGGAGTTCTGAGTCTAAAGCGGTGACTGATGCGGACTCGTCAGAGGGGAGAAAAGAGAAGTTCAACAATGTTAAGGTATGCAGCTTGGCTGGTAAAGAGAAGTCATTGTCTCAAAAGAACTCGCCCATCGCTGGACCCACTTCTCTTCCCAAATCCAAGACAAGCCCAACTTCTTCAGGTGGGCCTAGTAATGGGGCTGCCAAAGAAAAAGTGAGGTCCGTTAAGAAAAAGCCCATTGGTATTGATGTGGATGGATCTAATAAAGCACGTGTACTTTTAAATTGGAAGGCACGTGCAAGATTGGGCAGCAACCCCTTTTGTTCAACTGTAACAAACCCTATTCATCTCTCTGTTACCATTCTGGAAGAAAAGAAATCGGCAAAGAAAGTAGTTAATCCATCTGCCCCTGCGATGGAGACCTCTAAAGTTACTGAATCTGATACTTGTATGGCTGACACCGTGATGGGTTCCGATTTTCAAACCCATCACGAGCAATTTAACAAAAGTATTAATAGAGGAGGTGGATTGGCCTTACTGTGGAGGAATGATTGGAAGGTGAAAATTATCTCCTCTTCAACCGGTCATATCGATGCGAGAGTCACAATCAACAACAATGTTTCATGCAGATTTACTGGTTTCTATGGTAATCCATGTTCTAGACTCAGATTTCAATCTTGGGAGTTGTTGCGTCGGCTGGCAAGGGTCAGTAGTGAGCCTTGGATCGTTGGTAGAGATTTCAATGAGATTCTCAGGGATGAAGAGAAAACAGGGAAGAGATTCAGATCCCTTTGCCAAATGCTCGACTTTCAAGAGGCAATCGACAGTTGTGATCTCAGAGAAGTGGATGTTGTTGGGGGTAAGTTTACTTGGGATAACAGAAGAAAAGGAGGTGACAACGTGAAAGAAAGGTTAGACAGGGCTTTTGTGAACTCTGATTGCTCTAACTTATTTAATCACATTCGTATTCGTCACCTTGCTTTTAGAACTTTTGATCATTTACCAATCTTTATTGAATTGGGGGAGCAAGCTGGGAAATGGAAGTGGGTAAAGAGAAAAAGAAGATTCTTCTTTGAGAGCTTTTGGAAAGACCATGAAGGTTGCGAGGAAGCTATTAAGAAGGCTTGGGAGGGGGAAGGCAATGTTAATCAGAAATTGAATGTTGTTTCTAATAGTCTCTTGAATTGGAGTAACCAAACTTTTGGTCACATCCCCTCTCAGATTAGAAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

654

Amino Acids

72.68

Weight (kDa)

9.64

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 410 - 554 3.1e-06 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 680
AatII GACGTC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 664
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 14
AciI CCGC 4 cut(s) 12, 14, 749, 761
AclWI GGATC 4 cut(s) 464, 991, 1457, 1506
AcoI YGGCCR 3 cut(s) 3, 28, 125
AcuI CTGAAG 2 cut(s) 345, 888
AcvI CACGTG 2 cut(s) 998, 1022
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 3 cut(s) 453, 721, 1002
AfiI CCNNNNNNNGG 8 cut(s) 76, 566, 612, 729, 860, 920, 1141, 1266
AflIII ACRYGT 2 cut(s) 73, 997
AgeI ACCGGT 1 cut(s) 1307
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 2 cut(s) 338, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 5 cut(s) 322, 646, 843, 1139, 1907
AlwI GGATC 4 cut(s) 464, 991, 1457, 1506
AlwNI CAGNNNCTG 1 cut(s) 205
AoxI GGCC 8 cut(s) 3, 28, 125, 271, 463, 520, 911, 1257
ApeKI GCWGC 3 cut(s) 810, 926, 1035
ArsI GACNNNNNNTTYG 6 cut(s) 640, 672, 1634, 1666, 1915, 1947
AseI ATTAAT 1 cut(s) 1239
AsiGI ACCGGT 1 cut(s) 1307
Asp700I GAANNNNTTC 1 cut(s) 1505
AspA2I CCTAGG 1 cut(s) 517
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 6 cut(s) 363, 556, 625, 863, 911, 945
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 6 cut(s) 305, 557, 763, 1297, 1631, 1691
AvaII GGWCC 5 cut(s) 363, 556, 625, 863, 945
AvrII CCTAGG 1 cut(s) 517
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 403, 435
BauI CACGAG 2 cut(s) 90, 1217
BbrPI CACGTG 2 cut(s) 998, 1022
BbsI GAAGAC 2 cut(s) 30, 227
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 822, 913, 1047
BccI CCATC 9 cut(s) 158, 290, 525, 863, 974, 1135, 1135, 1186, 1221
BceAI ACGGC 2 cut(s) 43, 112
BciT130I CCWGG 2 cut(s) 340, 543
BclI TGATCA 1 cut(s) 1720
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 5 cut(s) 322, 646, 843, 1139, 1907
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 7 cut(s) 84, 120, 149, 171, 518, 915, 1386
BfoI RGCGCY 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 664
BisI GCNGC 4 cut(s) 15, 811, 927, 1036
BlnI CCTAGG 1 cut(s) 517
BlsI GCNGC 4 cut(s) 16, 812, 928, 1037
Bme1390I CCNGG 3 cut(s) 340, 543, 560
Bme18I GGWCC 5 cut(s) 363, 556, 625, 863, 945
BmgT120I GGNCC 6 cut(s) 363, 556, 625, 863, 911, 945
BmiI GGNNCC 5 cut(s) 557, 558, 626, 865, 1198
BmrFI CCNGG 3 cut(s) 340, 543, 560
BmsI GCATC 4 cut(s) 385, 503, 748, 1309
BpiI GAAGAC 2 cut(s) 30, 227
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 1317
BsaAI YACGTR 2 cut(s) 998, 1022
BsaBI GATNNNNATC 2 cut(s) 1399, 1510
BsaHI GRCGYC 1 cut(s) 655
BsaI GGTCTC 1 cut(s) 1139
BsaJI CCNNGG 5 cut(s) 12, 359, 517, 541, 1445
BsaWI WCCGGW 1 cut(s) 1307
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 566, 612, 729, 860, 920, 1141, 1266
Bse118I RCCGGY 2 cut(s) 48, 1307
Bse1I ACTGG 3 cut(s) 57, 195, 1366
Bse3DI GCAATG 1 cut(s) 1873
Bse8I GATNNNNATC 2 cut(s) 1399, 1510
BseBI CCWGG 2 cut(s) 340, 543
BseCI ATCGAT 1 cut(s) 1317
BseDI CCNNGG 5 cut(s) 12, 359, 517, 541, 1445
BseGI GGATG 4 cut(s) 985, 1489, 1579, 1935
BseJI GATNNNNATC 2 cut(s) 1399, 1510
BseLI CCNNNNNNNGG 8 cut(s) 76, 566, 612, 729, 860, 920, 1141, 1266
BseMI GCAATG 1 cut(s) 1873
BseMII CTCAG 6 cut(s) 197, 729, 1405, 1492, 1576, 1958
BseNI ACTGG 3 cut(s) 57, 195, 1366
BseRI GAGGAG 4 cut(s) 243, 310, 1260, 1288
BseX3I CGGCCG 1 cut(s) 28
BseXI GCAGC 3 cut(s) 822, 913, 1047
BseYI CCCAGC 1 cut(s) 1757
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 8 cut(s) 5, 30, 127, 273, 465, 522, 913, 1259
BshTI ACCGGT 1 cut(s) 1307
BshVI ATCGAT 1 cut(s) 1317
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 4 cut(s) 49, 211, 560, 1308
BslFI GGGAC 2 cut(s) 569, 613
BslI CCNNNNNNNGG 8 cut(s) 76, 566, 612, 729, 860, 920, 1141, 1266
BsmAI GTCTC 5 cut(s) 322, 646, 843, 1139, 1907
BsmBI CGTCTC 1 cut(s) 646
BsmFI GGGAC 2 cut(s) 569, 613
BsnI GGCC 8 cut(s) 5, 30, 127, 273, 465, 522, 913, 1259
Bso31I GGTCTC 1 cut(s) 1139
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
BspACI CCGC 4 cut(s) 12, 14, 749, 761
BspANI GGCC 8 cut(s) 5, 30, 127, 273, 465, 522, 913, 1259
BspCNI CTCAG 6 cut(s) 198, 730, 1404, 1491, 1575, 1957
BspDI ATCGAT 1 cut(s) 1317
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 5 cut(s) 557, 558, 626, 865, 1198
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 4 cut(s) 464, 991, 1457, 1506
BspTNI GGTCTC 1 cut(s) 1139
BsrDI GCAATG 1 cut(s) 1873
BsrFI RCCGGY 2 cut(s) 48, 1307
BsrI ACTGG 3 cut(s) 57, 195, 1366
BssAI RCCGGY 2 cut(s) 48, 1307
BssECI CCNNGG 5 cut(s) 12, 359, 517, 541, 1445
BssMI GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
BssNI GRCGYC 1 cut(s) 655
BssSI CACGAG 2 cut(s) 90, 1217
BssT1I CCWWGG 3 cut(s) 359, 517, 1445
Bst2BI CACGAG 2 cut(s) 90, 1217
Bst2UI CCWGG 2 cut(s) 340, 543
Bst4CI ACNGT 6 cut(s) 436, 633, 1057, 1189, 1266, 1553
Bst6I CTCTTC 4 cut(s) 879, 1306, 1482, 1496
BstACI GRCGYC 1 cut(s) 655
BstBAI YACGTR 2 cut(s) 998, 1022
BstC8I GCNNGC 5 cut(s) 7, 54, 504, 1425, 1755
BstDEI CTNAG 6 cut(s) 206, 738, 1391, 1478, 1562, 1944
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 985, 1489, 1579, 1935
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 7 cut(s) 309, 472, 986, 1452, 1514, 1561, 1723
BstMAI GTCTC 5 cut(s) 322, 646, 843, 1139, 1907
BstMBI GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 11, 335
BstNI CCWGG 2 cut(s) 340, 543
BstSCI CCNGG 3 cut(s) 338, 541, 558
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 822, 913, 1047
BstV2I GAAGAC 2 cut(s) 30, 227
BstX2I RGATCY 2 cut(s) 983, 1511
BstXI CCANNNNNNTGG 2 cut(s) 406, 1928
BstYI RGATCY 2 cut(s) 983, 1511
BstZI CGGCCG 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 1317
BsuRI GGCC 8 cut(s) 5, 30, 127, 273, 465, 522, 913, 1259
BsuTUI ATCGAT 1 cut(s) 1317
BtgI CCRYGG 1 cut(s) 12
BtgZI GCGATG 2 cut(s) 841, 1154
BtsCI GGATG 4 cut(s) 985, 1489, 1579, 1935
BtsIMutI CAGTG 1 cut(s) 441
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 5 cut(s) 7, 54, 504, 1425, 1755
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 2 cut(s) 48, 1307
Cfr13I GGNCC 6 cut(s) 363, 556, 625, 863, 911, 945
Cfr42I CCGCGG 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 1317
CseI GACGC 2 cut(s) 42, 1406
Csp6I GTAC 3 cut(s) 452, 720, 1001
CspAI ACCGGT 1 cut(s) 1307
CviAII CATG 6 cut(s) 461, 566, 698, 1350, 1380, 1820
CviQI GTAC 3 cut(s) 452, 720, 1001
DdeI CTNAG 6 cut(s) 206, 738, 1391, 1478, 1562, 1944
DpnI GATC 7 cut(s) 308, 471, 985, 1451, 1513, 1560, 1722
DpnII GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
DraI TTTAAA 1 cut(s) 1008
EaeI YGGCCR 3 cut(s) 3, 28, 125
EagI CGGCCG 1 cut(s) 28
Eam1104I CTCTTC 4 cut(s) 879, 1306, 1482, 1496
EarI CTCTTC 4 cut(s) 879, 1306, 1482, 1496
EclXI CGGCCG 1 cut(s) 28
Eco130I CCWWGG 3 cut(s) 359, 517, 1445
Eco31I GGTCTC 1 cut(s) 1139
Eco47I GGWCC 5 cut(s) 363, 556, 625, 863, 945
Eco52I CGGCCG 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 345, 888
Eco72I CACGTG 2 cut(s) 998, 1022
EcoO109I RGGNCCY 2 cut(s) 556, 625
EcoRII CCWGG 2 cut(s) 338, 541
EcoT14I CCWWGG 3 cut(s) 359, 517, 1445
ErhI CCWWGG 3 cut(s) 359, 517, 1445
Esp3I CGTCTC 1 cut(s) 646
FaeI CATG 6 cut(s) 464, 569, 701, 1353, 1383, 1823
FalI AAGNNNNNCTT 2 cut(s) 883, 915
FaqI GGGAC 2 cut(s) 569, 613
FatI CATG 6 cut(s) 460, 565, 697, 1349, 1379, 1819
FbaI TGATCA 1 cut(s) 1720
Fnu4HI GCNGC 4 cut(s) 15, 811, 927, 1036
FokI GGATG 4 cut(s) 992, 1496, 1586, 1922
Fsp4HI GCNGC 4 cut(s) 15, 811, 927, 1036
FspBI CTAG 7 cut(s) 84, 120, 149, 171, 518, 915, 1386
GlaI GCGC 1 cut(s) 18
GluI GCNGC 4 cut(s) 15, 811, 927, 1036
GsaI CCCAGC 1 cut(s) 1761
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 8 cut(s) 5, 30, 127, 273, 465, 522, 913, 1259
HapII CCGG 4 cut(s) 49, 211, 560, 1308
HgaI GACGC 2 cut(s) 42, 1406
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 6 cut(s) 464, 569, 701, 1353, 1383, 1823
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 2 cut(s) 375, 500
HinfI GANTC 9 cut(s) 152, 740, 764, 1163, 1326, 1389, 1474, 1506, 1791
HpaII CCGG 4 cut(s) 49, 211, 560, 1308
HphI GGTGA 6 cut(s) 305, 557, 763, 1297, 1631, 1691
Hpy166II GTNNAC 3 cut(s) 1001, 1593, 1657
Hpy188III TCNNGA 9 cut(s) 106, 149, 250, 473, 1091, 1217, 1386, 1538, 1906
Hpy8I GTNNAC 3 cut(s) 1001, 1593, 1657
Hpy99I CGWCG 3 cut(s) 36, 660, 1422
HpyAV CCTTC 7 cut(s) 284, 722, 1009, 1276, 1817, 1840, 1856
HpyCH4III ACNGT 6 cut(s) 436, 633, 1057, 1189, 1266, 1553
HpyCH4IV ACGT 5 cut(s) 73, 655, 997, 1021, 1626
HpyCH4V TGCA 5 cut(s) 135, 225, 810, 1025, 1353
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 335
HpyF3I CTNAG 6 cut(s) 206, 738, 1391, 1478, 1562, 1944
HpySE526I ACGT 5 cut(s) 73, 655, 997, 1021, 1626
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 6 cut(s) 464, 569, 701, 1353, 1383, 1823
HspAI GCGC 1 cut(s) 17
KflI GGGWCCC 1 cut(s) 556
Ksp22I TGATCA 1 cut(s) 1720
KspI CCGCGG 1 cut(s) 15
Kzo9I GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
LmnI GCTCC 3 cut(s) 80, 586, 1750
Lsp1109I GCAGC 3 cut(s) 822, 913, 1047
LweI GCATC 4 cut(s) 385, 503, 748, 1309
MaeI CTAG 7 cut(s) 84, 120, 149, 171, 518, 915, 1386
MaeII ACGT 5 cut(s) 73, 655, 997, 1021, 1626
MaeIII GTNAC 9 cut(s) 751, 1057, 1081, 1156, 1327, 1619, 1697, 1916, 1931
MalI GATC 7 cut(s) 308, 471, 985, 1451, 1513, 1560, 1722
MboI GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
MflI RGATCY 2 cut(s) 983, 1511
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 140, 636, 1009, 1223, 1290, 1742, 1880, 1909
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 749, 758, 1335, 1383
MmeI TCCRAC 2 cut(s) 41, 475
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1505
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 1190, 1317
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 4 cut(s) 49, 211, 560, 1308
MspR9I CCNGG 3 cut(s) 340, 543, 560
MvaI CCWGG 2 cut(s) 340, 543
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 11, 335
NciI CCSGG 1 cut(s) 560
NdeII GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
NlaIII CATG 6 cut(s) 464, 569, 701, 1353, 1383, 1823
NlaIV GGNNCC 5 cut(s) 557, 558, 626, 865, 1198
NmuCI GTSAC 5 cut(s) 751, 1327, 1619, 1697, 1931
PdmI GAANNNNTTC 1 cut(s) 1505
PfeI GAWTC 5 cut(s) 152, 1163, 1474, 1506, 1791
PflMI CCANNNNNTGG 1 cut(s) 76
PinAI ACCGGT 1 cut(s) 1307
PkrI GCNGC 4 cut(s) 16, 812, 928, 1037
PleI GAGTC 4 cut(s) 748, 758, 1334, 1383
PmaCI CACGTG 2 cut(s) 998, 1022
PmlI CACGTG 2 cut(s) 998, 1022
PpsI GAGTC 4 cut(s) 748, 758, 1334, 1383
Ppu21I YACGTR 2 cut(s) 998, 1022
PpuMI RGGWCCY 2 cut(s) 556, 625
PshBI ATTAAT 1 cut(s) 1239
PsiI TTATAA 1 cut(s) 680
Psp5II RGGWCCY 2 cut(s) 556, 625
Psp6I CCWGG 2 cut(s) 338, 541
PspCI CACGTG 2 cut(s) 998, 1022
PspFI CCCAGC 1 cut(s) 1757
PspGI CCWGG 2 cut(s) 338, 541
PspN4I GGNNCC 5 cut(s) 557, 558, 626, 865, 1198
PspPI GGNCC 6 cut(s) 363, 556, 625, 863, 911, 945
PspPPI RGGWCCY 2 cut(s) 556, 625
PsrI GAACNNNNNNTAC 2 cut(s) 1366, 1398
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 2 cut(s) 983, 1511
RsaI GTAC 3 cut(s) 453, 721, 1002
RsaNI GTAC 3 cut(s) 452, 720, 1001
RseI CAYNNNNRTG 2 cut(s) 1190, 1317
SacII CCGCGG 1 cut(s) 15
SatI GCNGC 4 cut(s) 15, 811, 927, 1036
Sau3AI GATC 7 cut(s) 306, 469, 983, 1449, 1511, 1558, 1720
Sau96I GGNCC 6 cut(s) 363, 556, 625, 863, 911, 945
SchI GAGTC 4 cut(s) 749, 758, 1335, 1383
ScrFI CCNGG 3 cut(s) 340, 543, 560
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 4 cut(s) 385, 503, 748, 1309
Sfr303I CCGCGG 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 15
SinI GGWCC 5 cut(s) 363, 556, 625, 863, 945
SmiMI CAYNNNNRTG 2 cut(s) 1190, 1317
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 8 cut(s) 140, 636, 1009, 1223, 1290, 1742, 1880, 1909
SsiI CCGC 4 cut(s) 12, 14, 749, 761
SspMI CTAG 7 cut(s) 84, 120, 149, 171, 518, 915, 1386
StyD4I CCNGG 3 cut(s) 338, 541, 558
StyI CCWWGG 3 cut(s) 359, 517, 1445
TaaI ACNGT 6 cut(s) 436, 633, 1057, 1189, 1266, 1553
TaiI ACGT 5 cut(s) 76, 658, 1000, 1024, 1629
TaqI TCGA 4 cut(s) 21, 1317, 1530, 1548
TasI AATT 8 cut(s) 140, 636, 1009, 1223, 1290, 1742, 1880, 1909
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 5 cut(s) 152, 1163, 1474, 1506, 1791
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 5 cut(s) 751, 1327, 1619, 1697, 1931
TseI GCWGC 3 cut(s) 810, 926, 1035
Tsp45I GTSAC 5 cut(s) 751, 1327, 1619, 1697, 1931
TspDTI ATGAA 6 cut(s) 449, 554, 1061, 1338, 1500, 1836
TspGWI ACGGA 1 cut(s) 937
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 5 cut(s) 363, 556, 625, 863, 945
VspI ATTAAT 1 cut(s) 1239
XbaI TCTAGA 2 cut(s) 148, 1385
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmaJI CCTAGG 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 1505
XspI CTAG 7 cut(s) 84, 120, 149, 171, 518, 915, 1386
ZraI GACGTC 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.