Rmu_co8402715.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8402715.1
OG0000022
Physical Location & Seq
Forward (+)
34 .. 1212
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8402715.1_g000001.1.cds

Sequence Viewer

Length: 1179 bp
atgagggtgctacaaggaagtccctggtcttatgacaactccctgctagtgttagtaccttcagacgggatggttgacccgggtacagtccctatcactcaccaggaattctggattagggcgaaagggctaccaccagcgctcctaactgacaaaatggggaggaaaattggaggtagtatcggaagatttattatgagtgatccaaacgtgactggagatgggagtgggagcttcctcaggctgcgagtggagttacgtttatcggatcctctgaggagaggcctgagactgcaggttgatccacgtgatcctcagttgagtaaagtggctcttgagtacgaacatctgccacatttttgcttgttttgtggtctccttgatcatgtggggattaattgtcaagcaagaatcgacggaaggatcacggagcaaagatttggaaggtggaagacgttgtcgaaggatgtttactctattgacctatatggccaactgcaaggcaagtcctatggtttaattcccaagaagcatcagtggtcggtcaaagctcctgagctgagtttgtgtggaacggttagggagagtgaggttacgacggactcagaagatagagcgattgagaatgagaccgtcaaaccggggagttttgagtggagtaatttgtcaaagcggcggaaacttcttggggagaagccaagcgaggaaacacaaatgcttgaacctgaagtaaaatcctcgactatgacagatgtggggtcagagaggcagatgtatgtgtcctctttgctgtttgatgtgcccattgcaacaaatggttttgggatagagaattccggtagcgaaatttcaaaggaacggggacctcaatgcattgacaaggttcagggactgaaggaaaagaagagtgcatctccaaaaaagaaggggcgaggtaagggtaagaaaagtgtggaggctggcgatgtccctcagcgagagttaaagcaagtgttctcctctcccggtaatggaaggaaatgtaagggttttgttctatctcgctctccgcgcaagttatttgtttttggatcgccgaacaagcagtcaacgaagatggagggtaatgtagcaggttctagttatttcaagcgaactattgtggtgggacccggagcccgggcccaccgcaaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

392

Amino Acids

43.49

Weight (kDa)

9.66

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 286, 1103
AccII CGCG 1 cut(s) 1051
AciI CCGC 4 cut(s) 673, 676, 1049, 1168
AclWI GGATC 7 cut(s) 197, 263, 276, 296, 305, 431, 1078
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 3 cut(s) 107, 832, 846
AcuI CTGAAG 3 cut(s) 45, 747, 914
AcvI CACGTG 1 cut(s) 308
AfaI GTAC 3 cut(s) 57, 85, 341
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 65, 1010, 1158
AgsI TTSAA 3 cut(s) 722, 852, 1129
AjnI CCWGG 2 cut(s) 23, 102
AluBI AGCT 3 cut(s) 234, 551, 559
AluI AGCT 3 cut(s) 234, 551, 559
Alw26I GTCTC 3 cut(s) 283, 380, 623
AlwI GGATC 7 cut(s) 197, 263, 276, 296, 305, 431, 1078
AlwNI CAGNNNCTG 1 cut(s) 892
Ama87I CYCGRG 2 cut(s) 79, 1158
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 3 cut(s) 283, 490, 1161
ApaI GGGCCC 1 cut(s) 1165
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 3 cut(s) 107, 832, 846
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AseI ATTAAT 1 cut(s) 396
AspLEI GCGC 2 cut(s) 142, 1053
AspS9I GGNCC 4 cut(s) 863, 1148, 1161, 1162
AsuC2I CCSGG 7 cut(s) 80, 81, 642, 1005, 1152, 1159, 1160
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 79, 1158
AvaII GGWCC 2 cut(s) 863, 1148
AxyI CCTNAGG 1 cut(s) 239
BaeGI GKGCMC 2 cut(s) 804, 1165
BalI TGGCCA 1 cut(s) 492
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 1159, 1165
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbrPI CACGTG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 972
BbvI GCAGC 1 cut(s) 231
BccI CCATC 3 cut(s) 64, 215, 1090
BciT130I CCWGG 2 cut(s) 25, 104
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 7 cut(s) 80, 81, 642, 1005, 1152, 1159, 1160
BcoDI GTCTC 3 cut(s) 283, 380, 623
BfaI CTAG 2 cut(s) 47, 1119
BfmI CTRYAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 143
BfuAI ACCTGC 2 cut(s) 286, 1103
BisI GCNGC 2 cut(s) 245, 674
BlsI GCNGC 2 cut(s) 246, 675
Bme1390I CCNGG 9 cut(s) 25, 80, 81, 104, 642, 1005, 1152, 1159, 1160
Bme18I GGWCC 2 cut(s) 863, 1148
BmeT110I CYCGRG 2 cut(s) 79, 1158
BmgT120I GGNCC 4 cut(s) 863, 1148, 1161, 1162
BmiI GGNNCC 6 cut(s) 270, 864, 1149, 1150, 1156, 1163
BmrFI CCNGG 9 cut(s) 25, 80, 81, 104, 642, 1005, 1152, 1159, 1160
BmsI GCATC 2 cut(s) 541, 920
BpiI GAAGAC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 898, 930
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 2 cut(s) 555, 972
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 7 cut(s) 80, 81, 642, 1005, 1152, 1159, 1160
BsaAI YACGTR 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 380, 623
BsaJI CCNNGG 4 cut(s) 23, 79, 641, 1158
BsaWI WCCGGW 1 cut(s) 836
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 1010, 1158
Bse1I ACTGG 1 cut(s) 220
Bse21I CCTNAGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 2 cut(s) 25, 104
BseDI CCNNGG 4 cut(s) 23, 79, 641, 1158
BseGI GGATG 2 cut(s) 75, 472
BseLI CCNNNNNNNGG 3 cut(s) 65, 1010, 1158
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 8 cut(s) 253, 266, 278, 329, 546, 551, 618, 986
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 292, 988
BseSI GKGCMC 2 cut(s) 804, 1165
BseXI GCAGC 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 1051
BshFI GGCC 3 cut(s) 285, 492, 1163
BsiHKCI CYCGRG 2 cut(s) 79, 1158
BsiSI CCGG 6 cut(s) 80, 641, 837, 1005, 1152, 1159
BslFI GGGAC 6 cut(s) 6, 74, 876, 903, 953, 1161
BslI CCNNNNNNNGG 3 cut(s) 65, 1010, 1158
BsmAI GTCTC 3 cut(s) 283, 380, 623
BsmFI GGGAC 6 cut(s) 6, 74, 876, 903, 953, 1161
BsnI GGCC 3 cut(s) 285, 492, 1163
Bso31I GGTCTC 2 cut(s) 380, 623
BsoBI CYCGRG 2 cut(s) 79, 1158
Bsp120I GGGCCC 1 cut(s) 1161
Bsp1286I GDGCHC 3 cut(s) 804, 1159, 1165
Bsp143I GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
BspACI CCGC 4 cut(s) 673, 676, 1049, 1168
BspANI GGCC 3 cut(s) 285, 492, 1163
BspCNI CTCAG 8 cut(s) 252, 267, 279, 328, 547, 552, 617, 985
BspFNI CGCG 1 cut(s) 1051
BspLI GGNNCC 6 cut(s) 270, 864, 1149, 1150, 1156, 1163
BspMAI CTGCAG 1 cut(s) 297
BspMI ACCTGC 2 cut(s) 286, 1103
BspPI GGATC 7 cut(s) 197, 263, 276, 296, 305, 431, 1078
BspTNI GGTCTC 2 cut(s) 380, 623
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 4 cut(s) 23, 79, 641, 1158
BssMI GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
Bst2UI CCWGG 2 cut(s) 25, 104
Bst4CI ACNGT 3 cut(s) 88, 577, 634
Bst6I CTCTTC 1 cut(s) 899
BstBAI YACGTR 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 961
BstDEI CTNAG 8 cut(s) 239, 275, 287, 315, 555, 560, 604, 972
BstF5I GGATG 2 cut(s) 75, 472
BstFNI CGCG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 2 cut(s) 142, 1053
BstKTI GATC 7 cut(s) 205, 271, 304, 313, 385, 426, 1073
BstMAI GTCTC 3 cut(s) 283, 380, 623
BstMBI GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
BstMWI GCNNNNNNNGC 2 cut(s) 1050, 1081
BstNI CCWGG 2 cut(s) 25, 104
BstSCI CCNGG 9 cut(s) 23, 78, 79, 102, 640, 1003, 1150, 1157, 1158
BstSFI CTRYAG 1 cut(s) 293
BstSLI GKGCMC 2 cut(s) 804, 1165
BstUI CGCG 1 cut(s) 1051
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu36I CCTNAGG 1 cut(s) 239
BsuRI GGCC 3 cut(s) 285, 492, 1163
BtgZI GCGATG 1 cut(s) 978
BtsCI GGATG 2 cut(s) 75, 472
BtsIMutI CAGTG 1 cut(s) 542
BveI ACCTGC 2 cut(s) 286, 1103
Cac8I GCNNGC 1 cut(s) 961
CaiI CAGNNNCTG 1 cut(s) 892
CfoI GCGC 2 cut(s) 142, 1053
Cfr13I GGNCC 4 cut(s) 863, 1148, 1161, 1162
Cfr9I CCCGGG 2 cut(s) 79, 1158
Csp6I GTAC 3 cut(s) 56, 84, 340
CviAII CATG 1 cut(s) 386
CviQI GTAC 3 cut(s) 56, 84, 340
DdeI CTNAG 8 cut(s) 239, 275, 287, 315, 555, 560, 604, 972
DpnI GATC 7 cut(s) 204, 270, 303, 312, 384, 425, 1072
DpnII GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
EciI GGCGGA 1 cut(s) 691
Eco147I AGGCCT 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 1159, 1165
Eco31I GGTCTC 2 cut(s) 380, 623
Eco47I GGWCC 2 cut(s) 863, 1148
Eco47III AGCGCT 1 cut(s) 141
Eco57I CTGAAG 3 cut(s) 45, 747, 914
Eco72I CACGTG 1 cut(s) 308
Eco81I CCTNAGG 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 79, 1158
EcoO109I RGGNCCY 2 cut(s) 863, 1148
EcoRI GAATTC 2 cut(s) 107, 832
EcoRII CCWGG 2 cut(s) 23, 102
EcoT22I ATGCAT 1 cut(s) 875
EcoT38I GRGCYC 2 cut(s) 1159, 1165
FaeI CATG 1 cut(s) 389
FaiI YATR 8 cut(s) 33, 197, 387, 487, 489, 513, 746, 777
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 6 cut(s) 6, 74, 876, 903, 953, 1161
FatI CATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 245, 674
FokI GGATG 2 cut(s) 82, 479
FriOI GRGCYC 2 cut(s) 1159, 1165
Fsp4HI GCNGC 2 cut(s) 245, 674
FspBI CTAG 2 cut(s) 47, 1119
GlaI GCGC 2 cut(s) 141, 1052
GluI GCNGC 2 cut(s) 245, 674
GsuI CTGGAG 1 cut(s) 237
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 3 cut(s) 285, 492, 1163
HapII CCGG 6 cut(s) 80, 641, 837, 1005, 1152, 1159
HhaI GCGC 2 cut(s) 142, 1053
Hin1II CATG 1 cut(s) 389
Hin6I GCGC 2 cut(s) 140, 1051
HinP1I GCGC 2 cut(s) 140, 1051
HincII GTYRAC 2 cut(s) 76, 1089
HindII GTYRAC 2 cut(s) 76, 1089
HinfI GANTC 2 cut(s) 411, 602
HpaII CCGG 6 cut(s) 80, 641, 837, 1005, 1152, 1159
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 3 cut(s) 76, 472, 1089
Hpy188I TCNGA 6 cut(s) 64, 185, 268, 276, 607, 763
Hpy188III TCNNGA 3 cut(s) 112, 335, 554
Hpy8I GTNNAC 3 cut(s) 76, 472, 1089
Hpy99I CGWCG 2 cut(s) 419, 601
HpyAV CCTTC 7 cut(s) 69, 414, 438, 457, 889, 919, 1008
HpyCH4III ACNGT 3 cut(s) 88, 577, 634
HpyCH4IV ACGT 4 cut(s) 210, 259, 307, 455
HpyCH4V TGCA 5 cut(s) 295, 499, 809, 873, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 1050, 1081
HpyF3I CTNAG 8 cut(s) 239, 275, 287, 315, 555, 560, 604, 972
HpySE526I ACGT 4 cut(s) 210, 259, 307, 455
Hsp92II CATG 1 cut(s) 389
HspAI GCGC 2 cut(s) 140, 1051
KflI GGGWCCC 1 cut(s) 1148
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
LmnI GCTCC 5 cut(s) 147, 231, 430, 556, 1154
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 541, 920
MaeI CTAG 2 cut(s) 47, 1119
MaeII ACGT 4 cut(s) 210, 259, 307, 455
MaeIII GTNAC 3 cut(s) 211, 255, 592
MalI GATC 7 cut(s) 204, 270, 303, 312, 384, 425, 1072
MboI GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
MboII GAAGA 5 cut(s) 198, 463, 620, 916, 1105
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 3 cut(s) 804, 1159, 1165
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 7 cut(s) 107, 168, 397, 519, 661, 832, 846
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 1 cut(s) 596
Mox20I TGGCCA 1 cut(s) 492
Mph1103I ATGCAT 1 cut(s) 875
MscI TGGCCA 1 cut(s) 492
MseI TTAA 3 cut(s) 396, 518, 983
Msp20I TGGCCA 1 cut(s) 492
MspI CCGG 6 cut(s) 80, 641, 837, 1005, 1152, 1159
MspR9I CCNGG 9 cut(s) 25, 80, 81, 104, 642, 1005, 1152, 1159, 1160
MvaI CCWGG 2 cut(s) 25, 104
MvnI CGCG 1 cut(s) 1051
MwoI GCNNNNNNNGC 2 cut(s) 1050, 1081
NciI CCSGG 7 cut(s) 80, 81, 642, 1005, 1152, 1159, 1160
NdeII GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 6 cut(s) 270, 864, 1149, 1150, 1156, 1163
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 875
PceI AGGCCT 1 cut(s) 285
PfeI GAWTC 1 cut(s) 411
PflFI GACNNNGTC 1 cut(s) 457
PkrI GCNGC 2 cut(s) 246, 675
PleI GAGTC 1 cut(s) 596
PmaCI CACGTG 1 cut(s) 308
PmlI CACGTG 1 cut(s) 308
PpsI GAGTC 1 cut(s) 596
Ppu21I YACGTR 1 cut(s) 308
PpuMI RGGWCCY 2 cut(s) 863, 1148
PshBI ATTAAT 1 cut(s) 396
Psp5II RGGWCCY 2 cut(s) 863, 1148
Psp6I CCWGG 2 cut(s) 23, 102
PspCI CACGTG 1 cut(s) 308
PspGI CCWGG 2 cut(s) 23, 102
PspN4I GGNNCC 6 cut(s) 270, 864, 1149, 1150, 1156, 1163
PspOMI GGGCCC 1 cut(s) 1161
PspPI GGNCC 4 cut(s) 863, 1148, 1161, 1162
PspPPI RGGWCCY 2 cut(s) 863, 1148
PstI CTGCAG 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 892
PsuI RGATCY 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 457
RsaI GTAC 3 cut(s) 57, 85, 341
RsaNI GTAC 3 cut(s) 56, 84, 340
SaqAI TTAA 3 cut(s) 396, 518, 983
SatI GCNGC 2 cut(s) 245, 674
Sau3AI GATC 7 cut(s) 202, 268, 301, 310, 382, 423, 1070
Sau96I GGNCC 4 cut(s) 863, 1148, 1161, 1162
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 9 cut(s) 25, 80, 81, 104, 642, 1005, 1152, 1159, 1160
SduI GDGCHC 3 cut(s) 804, 1159, 1165
SfaNI GCATC 2 cut(s) 541, 920
SfcI CTRYAG 1 cut(s) 293
SinI GGWCC 2 cut(s) 863, 1148
SmaI CCCGGG 2 cut(s) 81, 1160
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SrfI GCCCGGGC 1 cut(s) 1160
Sse9I AATT 7 cut(s) 107, 168, 397, 519, 661, 832, 846
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 4 cut(s) 673, 676, 1049, 1168
SspMI CTAG 2 cut(s) 47, 1119
StuI AGGCCT 1 cut(s) 285
StyD4I CCNGG 9 cut(s) 23, 78, 79, 102, 640, 1003, 1150, 1157, 1158
TaaI ACNGT 3 cut(s) 88, 577, 634
TaiI ACGT 4 cut(s) 213, 262, 310, 458
TaqI TCGA 3 cut(s) 414, 461, 740
TaqII GACCGA 1 cut(s) 532
TasI AATT 7 cut(s) 107, 168, 397, 519, 661, 832, 846
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 3 cut(s) 396, 518, 983
Tru9I TTAA 3 cut(s) 396, 518, 983
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 211
TspGWI ACGGA 3 cut(s) 432, 443, 614
TspMI CCCGGG 2 cut(s) 79, 1158
TspRI CASTG 1 cut(s) 542
Tth111I GACNNNGTC 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 863, 1148
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 3 cut(s) 107, 832, 846
XmaI CCCGGG 2 cut(s) 79, 1158
XspI CTAG 2 cut(s) 47, 1119
Zsp2I ATGCAT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.