ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 544 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 12 |
| AclWI | GGATC | 2 cut(s) | 300, 505 |
| AcoI | YGGCCR | 2 cut(s) | 237, 274 |
| AcsI | RAATTY | 3 cut(s) | 17, 428, 440 |
| AfaI | GTAC | 1 cut(s) | 281 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 12, 493 |
| AgsI | TTSAA | 1 cut(s) | 474 |
| AluBI | AGCT | 1 cut(s) | 533 |
| AluI | AGCT | 1 cut(s) | 533 |
| AlwI | GGATC | 2 cut(s) | 300, 505 |
| AoxI | GGCC | 2 cut(s) | 237, 274 |
| ApeKI | GCWGC | 1 cut(s) | 483 |
| ApoI | RAATTY | 3 cut(s) | 17, 428, 440 |
| AspLEI | GCGC | 1 cut(s) | 545 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 1 cut(s) | 262 |
| AvaII | GGWCC | 1 cut(s) | 205 |
| BalI | TGGCCA | 2 cut(s) | 239, 276 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| BbvI | GCAGC | 1 cut(s) | 470 |
| BccI | CCATC | 2 cut(s) | 101, 139 |
| BisI | GCNGC | 1 cut(s) | 484 |
| BlpI | GCTNAGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 485 |
| Bme18I | GGWCC | 1 cut(s) | 205 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| BmiI | GGNNCC | 1 cut(s) | 114 |
| BmsI | GCATC | 1 cut(s) | 173 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 83 |
| BpuEI | CTTGAG | 1 cut(s) | 372 |
| BsaBI | GATNNNNATC | 2 cut(s) | 54, 291 |
| BsaJI | CCNNGG | 2 cut(s) | 116, 224 |
| BsaWI | WCCGGW | 1 cut(s) | 513 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 12, 493 |
| Bse1I | ACTGG | 3 cut(s) | 156, 277, 481 |
| Bse8I | GATNNNNATC | 2 cut(s) | 54, 291 |
| BseDI | CCNNGG | 2 cut(s) | 116, 224 |
| BseGI | GGATG | 4 cut(s) | 164, 355, 501, 588 |
| BseJI | GATNNNNATC | 2 cut(s) | 54, 291 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 12, 493 |
| BseMII | CTCAG | 2 cut(s) | 180, 371 |
| BseNI | ACTGG | 3 cut(s) | 156, 277, 481 |
| BseXI | GCAGC | 1 cut(s) | 470 |
| BshFI | GGCC | 2 cut(s) | 239, 276 |
| BsiSI | CCGG | 1 cut(s) | 514 |
| BslFI | GGGAC | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 12, 493 |
| BsmFI | GGGAC | 1 cut(s) | 278 |
| BsnI | GGCC | 2 cut(s) | 239, 276 |
| Bsp143I | GATC | 2 cut(s) | 292, 510 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 83 |
| Bsp19I | CCATGG | 1 cut(s) | 116 |
| BspANI | GGCC | 2 cut(s) | 239, 276 |
| BspCNI | CTCAG | 2 cut(s) | 181, 370 |
| BspLI | GGNNCC | 1 cut(s) | 114 |
| BspPI | GGATC | 2 cut(s) | 300, 505 |
| BspQI | GCTCTTC | 1 cut(s) | 540 |
| BsrI | ACTGG | 3 cut(s) | 156, 277, 481 |
| BssECI | CCNNGG | 2 cut(s) | 116, 224 |
| BssMI | GATC | 2 cut(s) | 292, 510 |
| BssT1I | CCWWGG | 2 cut(s) | 116, 224 |
| Bst4CI | ACNGT | 3 cut(s) | 128, 314, 382 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 540 |
| BstDEI | CTNAG | 4 cut(s) | 83, 189, 230, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 116 |
| BstF5I | GGATG | 4 cut(s) | 164, 355, 501, 588 |
| BstHHI | GCGC | 1 cut(s) | 545 |
| BstKTI | GATC | 2 cut(s) | 295, 513 |
| BstMBI | GATC | 2 cut(s) | 292, 510 |
| BstV1I | GCAGC | 1 cut(s) | 470 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 247 |
| BsuRI | GGCC | 2 cut(s) | 239, 276 |
| BtgI | CCRYGG | 1 cut(s) | 116 |
| BtsCI | GGATG | 4 cut(s) | 164, 355, 501, 588 |
| BtsIMutI | CAGTG | 1 cut(s) | 149 |
| CfoI | GCGC | 1 cut(s) | 545 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| Csp6I | GTAC | 1 cut(s) | 280 |
| CviAII | CATG | 2 cut(s) | 117, 209 |
| CviJI | RGCY | 7 cut(s) | 194, 229, 239, 276, 362, 483, 533 |
| CviKI_1 | RGCY | 7 cut(s) | 194, 229, 239, 276, 362, 483, 533 |
| CviQI | GTAC | 1 cut(s) | 280 |
| DdeI | CTNAG | 4 cut(s) | 83, 189, 230, 357 |
| DpnI | GATC | 2 cut(s) | 294, 512 |
| DpnII | GATC | 2 cut(s) | 292, 510 |
| EaeI | YGGCCR | 2 cut(s) | 237, 274 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 540 |
| EarI | CTCTTC | 2 cut(s) | 65, 540 |
| Eco130I | CCWWGG | 2 cut(s) | 116, 224 |
| Eco47I | GGWCC | 1 cut(s) | 205 |
| EcoT14I | CCWWGG | 2 cut(s) | 116, 224 |
| ErhI | CCWWGG | 2 cut(s) | 116, 224 |
| FaeI | CATG | 2 cut(s) | 120, 212 |
| FaqI | GGGAC | 1 cut(s) | 278 |
| FatI | CATG | 2 cut(s) | 116, 208 |
| FauNDI | CATATG | 1 cut(s) | 424 |
| Fnu4HI | GCNGC | 1 cut(s) | 484 |
| FokI | GGATG | 4 cut(s) | 151, 362, 488, 575 |
| Fsp4HI | GCNGC | 1 cut(s) | 484 |
| FspI | TGCGCA | 1 cut(s) | 544 |
| GlaI | GCGC | 1 cut(s) | 544 |
| GluI | GCNGC | 1 cut(s) | 484 |
| HaeIII | GGCC | 2 cut(s) | 239, 276 |
| HapII | CCGG | 1 cut(s) | 514 |
| HhaI | GCGC | 1 cut(s) | 545 |
| Hin1II | CATG | 2 cut(s) | 120, 212 |
| Hin6I | GCGC | 1 cut(s) | 543 |
| HinP1I | GCGC | 1 cut(s) | 543 |
| HinfI | GANTC | 1 cut(s) | 385 |
| HpaII | CCGG | 1 cut(s) | 514 |
| HphI | GGTGA | 1 cut(s) | 262 |
| Hpy188I | TCNGA | 2 cut(s) | 190, 338 |
| Hpy188III | TCNNGA | 4 cut(s) | 104, 296, 347, 389 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4III | ACNGT | 3 cut(s) | 128, 314, 382 |
| HpyCH4IV | ACGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 1 cut(s) | 94 |
| HpyF3I | CTNAG | 4 cut(s) | 83, 189, 230, 357 |
| HpySE526I | ACGT | 1 cut(s) | 256 |
| Hsp92II | CATG | 2 cut(s) | 120, 212 |
| HspAI | GCGC | 1 cut(s) | 543 |
| Kzo9I | GATC | 2 cut(s) | 292, 510 |
| LguI | GCTCTTC | 1 cut(s) | 540 |
| LpnPI | CCDG | 8 cut(s) | 19, 137, 290, 332, 344, 462, 527, 553 |
| Lsp1109I | GCAGC | 1 cut(s) | 470 |
| LweI | GCATC | 1 cut(s) | 173 |
| MaeII | ACGT | 1 cut(s) | 256 |
| MaeIII | GTNAC | 2 cut(s) | 352, 382 |
| MalI | GATC | 2 cut(s) | 294, 512 |
| MboI | GATC | 2 cut(s) | 292, 510 |
| MboII | GAAGA | 3 cut(s) | 52, 404, 527 |
| MfeI | CAATTG | 1 cut(s) | 582 |
| MlsI | TGGCCA | 2 cut(s) | 239, 276 |
| MluCI | AATT | 5 cut(s) | 17, 196, 428, 440, 582 |
| MluNI | TGGCCA | 2 cut(s) | 239, 276 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MnlI | CCTC | 7 cut(s) | 74, 178, 184, 403, 473, 490, 587 |
| Mox20I | TGGCCA | 2 cut(s) | 239, 276 |
| MscI | TGGCCA | 2 cut(s) | 239, 276 |
| MseI | TTAA | 1 cut(s) | 137 |
| MslI | CAYNNNNRTG | 2 cut(s) | 287, 506 |
| Msp20I | TGGCCA | 2 cut(s) | 239, 276 |
| MspI | CCGG | 1 cut(s) | 514 |
| MunI | CAATTG | 1 cut(s) | 582 |
| NcoI | CCATGG | 1 cut(s) | 116 |
| NdeI | CATATG | 1 cut(s) | 424 |
| NdeII | GATC | 2 cut(s) | 292, 510 |
| NlaIII | CATG | 2 cut(s) | 120, 212 |
| NlaIV | GGNNCC | 1 cut(s) | 114 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| NsbI | TGCGCA | 1 cut(s) | 544 |
| PciSI | GCTCTTC | 1 cut(s) | 540 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 12 |
| PkrI | GCNGC | 1 cut(s) | 485 |
| PleI | GAGTC | 1 cut(s) | 379 |
| PpsI | GAGTC | 1 cut(s) | 379 |
| PspN4I | GGNNCC | 1 cut(s) | 114 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| RsaI | GTAC | 1 cut(s) | 281 |
| RsaNI | GTAC | 1 cut(s) | 280 |
| RseI | CAYNNNNRTG | 2 cut(s) | 287, 506 |
| SapI | GCTCTTC | 1 cut(s) | 540 |
| SaqAI | TTAA | 1 cut(s) | 137 |
| SatI | GCNGC | 1 cut(s) | 484 |
| Sau3AI | GATC | 2 cut(s) | 292, 510 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| SchI | GAGTC | 1 cut(s) | 379 |
| SetI | ASST | 4 cut(s) | 45, 259, 414, 535 |
| SfaNI | GCATC | 1 cut(s) | 173 |
| SinI | GGWCC | 1 cut(s) | 205 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 287, 506 |
| SmlI | CTYRAG | 1 cut(s) | 387 |
| SmoI | CTYRAG | 1 cut(s) | 387 |
| Sse9I | AATT | 5 cut(s) | 17, 196, 428, 440, 582 |
| SspI | AATATT | 1 cut(s) | 141 |
| StyI | CCWWGG | 2 cut(s) | 116, 224 |
| TaaI | ACNGT | 3 cut(s) | 128, 314, 382 |
| TaiI | ACGT | 1 cut(s) | 259 |
| TaqI | TCGA | 1 cut(s) | 38 |
| TasI | AATT | 5 cut(s) | 17, 196, 428, 440, 582 |
| TatI | WGTACW | 1 cut(s) | 279 |
| Tru1I | TTAA | 1 cut(s) | 137 |
| Tru9I | TTAA | 1 cut(s) | 137 |
| TscAI | CASTG | 1 cut(s) | 156 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| TseI | GCWGC | 1 cut(s) | 483 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 4 cut(s) | 320, 411, 441, 458 |
| TspRI | CASTG | 1 cut(s) | 156 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 12 |
| VpaK11BI | GGWCC | 1 cut(s) | 205 |
| XapI | RAATTY | 3 cut(s) | 17, 428, 440 |