Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 172 |
| Acc36I | ACCTGC | 1 cut(s) | 445 |
| AccI | GTMKAC | 1 cut(s) | 299 |
| AccIII | TCCGGA | 1 cut(s) | 369 |
| AciI | CCGC | 5 cut(s) | 303, 383, 695, 897, 900 |
| AclWI | GGATC | 2 cut(s) | 351, 904 |
| AcoI | YGGCCR | 1 cut(s) | 882 |
| AfaI | GTAC | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 376, 481, 784, 785 |
| AgsI | TTSAA | 2 cut(s) | 415, 665 |
| AjnI | CCWGG | 1 cut(s) | 474 |
| AluBI | AGCT | 3 cut(s) | 661, 767, 799 |
| AluI | AGCT | 3 cut(s) | 661, 767, 799 |
| Alw26I | GTCTC | 4 cut(s) | 60, 180, 189, 318 |
| AlwI | GGATC | 2 cut(s) | 351, 904 |
| Aor13HI | TCCGGA | 1 cut(s) | 369 |
| AoxI | GGCC | 2 cut(s) | 36, 882 |
| AspA2I | CCTAGG | 1 cut(s) | 400 |
| AspS9I | GGNCC | 1 cut(s) | 902 |
| AsuHPI | GGTGA | 3 cut(s) | 37, 229, 496 |
| AvaII | GGWCC | 1 cut(s) | 902 |
| AvrII | CCTAGG | 1 cut(s) | 400 |
| BbsI | GAAGAC | 2 cut(s) | 520, 825 |
| BccI | CCATC | 5 cut(s) | 154, 367, 588, 830, 868 |
| BciT130I | CCWGG | 1 cut(s) | 476 |
| BcoDI | GTCTC | 4 cut(s) | 60, 180, 189, 318 |
| BfaI | CTAG | 3 cut(s) | 401, 833, 866 |
| BfuAI | ACCTGC | 1 cut(s) | 445 |
| BglII | AGATCT | 1 cut(s) | 10 |
| BisI | GCNGC | 1 cut(s) | 898 |
| BlnI | CCTAGG | 1 cut(s) | 400 |
| BlsI | GCNGC | 1 cut(s) | 899 |
| Bme1390I | CCNGG | 1 cut(s) | 476 |
| Bme18I | GGWCC | 1 cut(s) | 902 |
| BmgT120I | GGNCC | 1 cut(s) | 902 |
| BmrFI | CCNGG | 1 cut(s) | 476 |
| BmsI | GCATC | 1 cut(s) | 604 |
| BpiI | GAAGAC | 2 cut(s) | 520, 825 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 845, 877 |
| BpmI | CTGGAG | 1 cut(s) | 753 |
| BpuEI | CTTGAG | 1 cut(s) | 620 |
| BsaI | GGTCTC | 2 cut(s) | 189, 318 |
| BsaJI | CCNNGG | 3 cut(s) | 212, 400, 475 |
| BsaWI | WCCGGW | 3 cut(s) | 327, 369, 904 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 38, 68 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 376, 481, 784, 785 |
| Bse118I | RCCGGY | 1 cut(s) | 691 |
| Bse1I | ACTGG | 2 cut(s) | 510, 524 |
| BseAI | TCCGGA | 1 cut(s) | 369 |
| BseBI | CCWGG | 1 cut(s) | 476 |
| BseDI | CCNNGG | 3 cut(s) | 212, 400, 475 |
| BseGI | GGATG | 3 cut(s) | 378, 803, 879 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 376, 481, 784, 785 |
| BseMII | CTCAG | 2 cut(s) | 71, 75 |
| BseNI | ACTGG | 2 cut(s) | 510, 524 |
| BseRI | GAGGAG | 2 cut(s) | 62, 65 |
| BshFI | GGCC | 2 cut(s) | 38, 884 |
| BsiSI | CCGG | 6 cut(s) | 328, 370, 451, 692, 885, 905 |
| BslFI | GGGAC | 1 cut(s) | 178 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 376, 481, 784, 785 |
| BsmAI | GTCTC | 4 cut(s) | 60, 180, 189, 318 |
| BsmFI | GGGAC | 1 cut(s) | 178 |
| BsmI | GAATGC | 1 cut(s) | 355 |
| BsnI | GGCC | 2 cut(s) | 38, 884 |
| Bso31I | GGTCTC | 2 cut(s) | 189, 318 |
| Bsp13I | TCCGGA | 1 cut(s) | 369 |
| Bsp143I | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| BspACI | CCGC | 5 cut(s) | 303, 383, 695, 897, 900 |
| BspANI | GGCC | 2 cut(s) | 38, 884 |
| BspCNI | CTCAG | 2 cut(s) | 70, 76 |
| BspEI | TCCGGA | 1 cut(s) | 369 |
| BspMI | ACCTGC | 1 cut(s) | 445 |
| BspPI | GGATC | 2 cut(s) | 351, 904 |
| BspQI | GCTCTTC | 1 cut(s) | 412 |
| BspTNI | GGTCTC | 2 cut(s) | 189, 318 |
| BsrFI | RCCGGY | 1 cut(s) | 691 |
| BsrI | ACTGG | 2 cut(s) | 510, 524 |
| BssAI | RCCGGY | 1 cut(s) | 691 |
| BssECI | CCNNGG | 3 cut(s) | 212, 400, 475 |
| BssMI | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| BssNAI | GTATAC | 1 cut(s) | 300 |
| BssT1I | CCWWGG | 1 cut(s) | 400 |
| Bst1107I | GTATAC | 1 cut(s) | 300 |
| Bst2UI | CCWGG | 1 cut(s) | 476 |
| Bst4CI | ACNGT | 2 cut(s) | 552, 609 |
| Bst6I | CTCTTC | 1 cut(s) | 412 |
| BstC8I | GCNNGC | 2 cut(s) | 36, 765 |
| BstDEI | CTNAG | 2 cut(s) | 57, 84 |
| BstF5I | GGATG | 3 cut(s) | 378, 803, 879 |
| BstKTI | GATC | 5 cut(s) | 13, 66, 208, 346, 912 |
| BstMAI | GTCTC | 4 cut(s) | 60, 180, 189, 318 |
| BstMBI | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| BstNI | CCWGG | 1 cut(s) | 476 |
| BstSCI | CCNGG | 1 cut(s) | 474 |
| BstV2I | GAAGAC | 2 cut(s) | 520, 825 |
| BstX2I | RGATCY | 2 cut(s) | 10, 909 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 587 |
| BstYI | RGATCY | 2 cut(s) | 10, 909 |
| BstZ17I | GTATAC | 1 cut(s) | 300 |
| BsuRI | GGCC | 2 cut(s) | 38, 884 |
| BtsCI | GGATG | 3 cut(s) | 378, 803, 879 |
| BveI | ACCTGC | 1 cut(s) | 445 |
| Cac8I | GCNNGC | 2 cut(s) | 36, 765 |
| Cfr10I | RCCGGY | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 1 cut(s) | 902 |
| CpoI | CGGWCCG | 1 cut(s) | 902 |
| Csp6I | GTAC | 1 cut(s) | 419 |
| CspI | CGGWCCG | 1 cut(s) | 902 |
| CviAII | CATG | 5 cut(s) | 269, 314, 389, 557, 680 |
| CviQI | GTAC | 1 cut(s) | 419 |
| DdeI | CTNAG | 2 cut(s) | 57, 84 |
| DpnI | GATC | 5 cut(s) | 12, 65, 207, 345, 911 |
| DpnII | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 172 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 172 |
| EaeI | YGGCCR | 1 cut(s) | 882 |
| Eam1104I | CTCTTC | 1 cut(s) | 412 |
| EarI | CTCTTC | 1 cut(s) | 412 |
| EciI | GGCGGA | 1 cut(s) | 915 |
| Eco130I | CCWWGG | 1 cut(s) | 400 |
| Eco31I | GGTCTC | 2 cut(s) | 189, 318 |
| Eco47I | GGWCC | 1 cut(s) | 902 |
| EcoRII | CCWGG | 1 cut(s) | 474 |
| EcoT14I | CCWWGG | 1 cut(s) | 400 |
| ErhI | CCWWGG | 1 cut(s) | 400 |
| FaeI | CATG | 5 cut(s) | 272, 317, 392, 560, 683 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 645, 677 |
| FaqI | GGGAC | 1 cut(s) | 178 |
| FatI | CATG | 5 cut(s) | 268, 313, 388, 556, 679 |
| FauNDI | CATATG | 1 cut(s) | 569 |
| FblI | GTMKAC | 1 cut(s) | 299 |
| Fnu4HI | GCNGC | 1 cut(s) | 898 |
| FokI | GGATG | 3 cut(s) | 385, 790, 886 |
| Fsp4HI | GCNGC | 1 cut(s) | 898 |
| FspBI | CTAG | 3 cut(s) | 401, 833, 866 |
| GluI | GCNGC | 1 cut(s) | 898 |
| GsuI | CTGGAG | 1 cut(s) | 753 |
| HaeIII | GGCC | 2 cut(s) | 38, 884 |
| HapII | CCGG | 6 cut(s) | 328, 370, 451, 692, 885, 905 |
| Hin1II | CATG | 5 cut(s) | 272, 317, 392, 560, 683 |
| HindIII | AAGCTT | 1 cut(s) | 659 |
| HinfI | GANTC | 6 cut(s) | 53, 86, 105, 560, 683, 860 |
| HpaII | CCGG | 6 cut(s) | 328, 370, 451, 692, 885, 905 |
| HphI | GGTGA | 3 cut(s) | 37, 229, 496 |
| Hpy166II | GTNNAC | 3 cut(s) | 300, 397, 575 |
| Hpy188I | TCNGA | 5 cut(s) | 85, 189, 348, 688, 808 |
| Hpy188III | TCNNGA | 5 cut(s) | 59, 370, 599, 770, 786 |
| Hpy8I | GTNNAC | 3 cut(s) | 300, 397, 575 |
| HpyAV | CCTTC | 4 cut(s) | 24, 119, 190, 733 |
| HpyCH4III | ACNGT | 2 cut(s) | 552, 609 |
| HpyCH4V | TGCA | 3 cut(s) | 353, 388, 763 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 84 |
| Hsp92II | CATG | 5 cut(s) | 272, 317, 392, 560, 683 |
| Kpn2I | TCCGGA | 1 cut(s) | 369 |
| Kzo9I | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| LguI | GCTCTTC | 1 cut(s) | 412 |
| LmnI | GCTCC | 1 cut(s) | 772 |
| LweI | GCATC | 1 cut(s) | 604 |
| MaeI | CTAG | 3 cut(s) | 401, 833, 866 |
| MaeIII | GTNAC | 3 cut(s) | 217, 457, 552 |
| MalI | GATC | 5 cut(s) | 12, 65, 207, 345, 911 |
| MboI | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| MflI | RGATCY | 2 cut(s) | 10, 909 |
| MluCI | AATT | 2 cut(s) | 79, 249 |
| MlyI | GAGTC | 4 cut(s) | 62, 95, 692, 854 |
| MmeI | TCCRAC | 1 cut(s) | 689 |
| MnlI | CCTC | 9 cut(s) | 40, 43, 207, 370, 475, 664, 808, 871, 887 |
| MroI | TCCGGA | 1 cut(s) | 369 |
| MseI | TTAA | 2 cut(s) | 41, 919 |
| MslI | CAYNNNNRTG | 3 cut(s) | 273, 585, 808 |
| MspI | CCGG | 6 cut(s) | 328, 370, 451, 692, 885, 905 |
| MspR9I | CCNGG | 1 cut(s) | 476 |
| Mva1269I | GAATGC | 1 cut(s) | 355 |
| MvaI | CCWGG | 1 cut(s) | 476 |
| NdeI | CATATG | 1 cut(s) | 569 |
| NdeII | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| NlaIII | CATG | 5 cut(s) | 272, 317, 392, 560, 683 |
| NmuCI | GTSAC | 2 cut(s) | 217, 552 |
| PciSI | GCTCTTC | 1 cut(s) | 412 |
| PctI | GAATGC | 1 cut(s) | 355 |
| PfeI | GAWTC | 2 cut(s) | 105, 560 |
| PkrI | GCNGC | 1 cut(s) | 899 |
| PleI | GAGTC | 4 cut(s) | 61, 94, 691, 854 |
| PpsI | GAGTC | 4 cut(s) | 61, 94, 691, 854 |
| Psp6I | CCWGG | 1 cut(s) | 474 |
| PspGI | CCWGG | 1 cut(s) | 474 |
| PspPI | GGNCC | 1 cut(s) | 902 |
| PsuI | RGATCY | 2 cut(s) | 10, 909 |
| RsaI | GTAC | 1 cut(s) | 420 |
| RsaNI | GTAC | 1 cut(s) | 419 |
| RseI | CAYNNNNRTG | 3 cut(s) | 273, 585, 808 |
| Rsr2I | CGGWCCG | 1 cut(s) | 902 |
| RsrII | CGGWCCG | 1 cut(s) | 902 |
| SapI | GCTCTTC | 1 cut(s) | 412 |
| SaqAI | TTAA | 2 cut(s) | 41, 919 |
| SatI | GCNGC | 1 cut(s) | 898 |
| Sau3AI | GATC | 5 cut(s) | 10, 63, 205, 343, 909 |
| Sau96I | GGNCC | 1 cut(s) | 902 |
| SchI | GAGTC | 4 cut(s) | 62, 95, 692, 854 |
| ScrFI | CCNGG | 1 cut(s) | 476 |
| SetI | ASST | 7 cut(s) | 402, 459, 486, 663, 769, 801, 882 |
| SfaNI | GCATC | 1 cut(s) | 604 |
| SinI | GGWCC | 1 cut(s) | 902 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 273, 585, 808 |
| SmlI | CTYRAG | 1 cut(s) | 599 |
| SmoI | CTYRAG | 1 cut(s) | 599 |
| Sse9I | AATT | 2 cut(s) | 79, 249 |
| SsiI | CCGC | 5 cut(s) | 303, 383, 695, 897, 900 |
| SspMI | CTAG | 3 cut(s) | 401, 833, 866 |
| StyD4I | CCNGG | 1 cut(s) | 474 |
| StyI | CCWWGG | 1 cut(s) | 400 |
| TaaI | ACNGT | 2 cut(s) | 552, 609 |
| TaqI | TCGA | 2 cut(s) | 121, 469 |
| TasI | AATT | 2 cut(s) | 79, 249 |
| TatI | WGTACW | 1 cut(s) | 418 |
| TauI | GCSGC | 1 cut(s) | 900 |
| TfiI | GAWTC | 2 cut(s) | 105, 560 |
| Tru1I | TTAA | 2 cut(s) | 41, 919 |
| Tru9I | TTAA | 2 cut(s) | 41, 919 |
| TseFI | GTSAC | 2 cut(s) | 217, 552 |
| Tsp45I | GTSAC | 2 cut(s) | 217, 552 |
| TspDTI | ATGAA | 5 cut(s) | 185, 285, 302, 483, 516 |
| TspGWI | ACGGA | 3 cut(s) | 59, 252, 905 |
| VpaK11BI | GGWCC | 1 cut(s) | 902 |
| XmaJI | CCTAGG | 1 cut(s) | 400 |
| XmiI | GTMKAC | 1 cut(s) | 299 |
| XspI | CTAG | 3 cut(s) | 401, 833, 866 |