Rmu_sc0001382.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001382.1
OG0000022
Physical Location & Seq
Forward (+)
3150 .. 5835
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001382.1_g000002.1.cds

Sequence Viewer

Length: 1524 bp
atgaccatgccgggcagcgtcccaatgaacatgctgggcagcgtcccgatgaacatattagggcagagcctccgctgcaggccttgcgctctcaaatcccagcagcaggcctccccatattgtaggagcgacaactttgctctctcaccctggcagcagcgtctcgtctctgtggcactttcaaactcacaaagaaagtcaaagctgcaggttaccactactactgacgagccacgcactggtgaaatcacgctggcaaagttcttgcctccaccggtacctgcagcacatacaaaggctctgtcaaacaggggattgcaaagaatggctgagagaacgaccgatcatggacaattgattattgttccgggtctagagttcgaatcccagcttcatcccgtggccagcagatttgagggatctgggttagttaaaacacccaatggttcgtgcgtctgcggtgcagtgattagtctggctatgctgggatacactgcatggtgtcacagtctctacatactggaacctattcatcggtctatgtggtggatagttttttctatgtggtgggggttaagtgtgattgcaagttggttgtgtcgaattgaggagtcgctggtggagttagccaagaaattggctttgaacaagacagaaaaccatgagatcatccagatcgaagatgcacaggtggtggaggctcagaaattttggatggttgggaagttgttcacaaaaaaagagtttaactttgaggccttgaaaggaatgatgaagaagttatgggcggtgaaggaagagatatctatttttcaatgggagagaactgatcgcattctctttgcattcactgttgatgtagacaggaggaaagtgttatggggaagcccatggacttttaagcatgcactgttgctgttgacagcgacggatggcaaatcggatccaatggaggtgtcactggacattcaaccgttctggattcgggcgagaggagtccccctggcgtttctaacgaagaatttggcagagcgcattggacgtcaactggggatttatttcccgaagagaggcgatagtggagaggattgttgtgggagctttcttcggtttagagtcggattgtcggtaaagcaacctttgcgaaaatgggtgatgatatccctggttgcgttagagtacgagcatctactgcatttctgtttctattgtagtttaatggaccatgtcagttcgaattgcagattagttcaagaaaagttggtttcggaagtccgatatgggcggtggaagacactggtggcggatgtgtattttatcgaaaattgtcaattacaagggaaggtgtttggtctgcggtcaaagcgaagtcaatcgtctttgaaagcactggagcttggtggtctgggcccagtgagaagcagggaggattttgagcaaaatgttattgattctttgttagccatgggagttttgggggggggggggaggaagaggcgacggtggatgaatcccaggcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

507

Amino Acids

57.6

Weight (kDa)

9.49

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1045
Acc36I ACCTGC 2 cut(s) 199, 289
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 239
AccI GTMKAC 1 cut(s) 861
AciI CCGC 6 cut(s) 73, 459, 788, 1285, 1304, 1357
AclWI GGATC 3 cut(s) 427, 938, 951
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 2 cut(s) 707, 1021
AcyI GRCGYC 1 cut(s) 1042
AfaI GTAC 2 cut(s) 279, 1181
AfiI CCNNNNNNNGG 3 cut(s) 106, 239, 1070
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 7 cut(s) 183, 646, 763, 815, 971, 1253, 1384
AjnI CCWGG 4 cut(s) 149, 1002, 1164, 1514
AluBI AGCT 4 cut(s) 205, 391, 1101, 1396
AluI AGCT 4 cut(s) 205, 391, 1101, 1396
Alw26I GTCTC 3 cut(s) 167, 172, 515
AlwI GGATC 3 cut(s) 427, 938, 951
AoxI GGCC 5 cut(s) 80, 108, 402, 756, 1408
ApaI GGGCCC 1 cut(s) 1412
ApeKI GCWGC 8 cut(s) 15, 39, 75, 103, 154, 157, 205, 284
ApoI RAATTY 2 cut(s) 707, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AsiGI ACCGGT 1 cut(s) 274
Asp700I GAANNNNTTC 2 cut(s) 528, 728
Asp718I GGTACC 1 cut(s) 277
AspLEI GCGC 2 cut(s) 89, 1035
AspS9I GGNCC 3 cut(s) 1222, 1408, 1409
AsuC2I CCSGG 2 cut(s) 12, 369
AsuHPI GGTGA 4 cut(s) 138, 254, 802, 1165
AsuII TTCGAA 2 cut(s) 381, 1235
AvaII GGWCC 1 cut(s) 1222
BaeGI GKGCMC 1 cut(s) 1412
BalI TGGCCA 1 cut(s) 404
BamHI GGATCC 1 cut(s) 943
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 1412
BbsI GAAGAC 1 cut(s) 1298
BbvI GCAGC 8 cut(s) 27, 51, 62, 115, 166, 169, 192, 296
BccI CCATC 2 cut(s) 709, 926
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 4 cut(s) 151, 1004, 1166, 1516
BciVI GTATCC 1 cut(s) 482
BcnI CCSGG 2 cut(s) 12, 369
BcoDI GTCTC 3 cut(s) 167, 172, 515
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 3 cut(s) 76, 206, 282
BfuAI ACCTGC 2 cut(s) 199, 289
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 8 cut(s) 16, 40, 76, 104, 155, 158, 206, 285
BlsI GCNGC 8 cut(s) 17, 41, 77, 105, 156, 159, 207, 286
Bme1390I CCNGG 6 cut(s) 12, 151, 369, 1004, 1166, 1516
Bme18I GGWCC 1 cut(s) 1222
BmgT120I GGNCC 3 cut(s) 1222, 1408, 1409
BmiI GGNNCC 4 cut(s) 279, 525, 945, 1410
BmrFI CCNGG 6 cut(s) 12, 151, 369, 1004, 1166, 1516
BmrI ACTGGG 2 cut(s) 1058, 1406
BmsI GCATC 2 cut(s) 673, 1195
BmuI ACTGGG 2 cut(s) 1058, 1406
BpiI GAAGAC 1 cut(s) 1298
BpmI CTGGAG 1 cut(s) 1412
Bpu14I TTCGAA 2 cut(s) 381, 1235
BpuMI CCSGG 2 cut(s) 12, 369
BsaHI GRCGYC 1 cut(s) 1042
BsaJI CCNNGG 7 cut(s) 149, 399, 890, 1002, 1164, 1464, 1514
BsaWI WCCGGW 1 cut(s) 274
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 239, 1070
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 7 cut(s) 244, 525, 966, 1053, 1302, 1395, 1412
BseBI CCWGG 4 cut(s) 151, 1004, 1166, 1516
BseDI CCNNGG 7 cut(s) 149, 399, 890, 1002, 1164, 1464, 1514
BseGI GGATG 6 cut(s) 394, 669, 720, 937, 1312, 1512
BseLI CCNNNNNNNGG 3 cut(s) 106, 239, 1070
BseMII CTCAG 2 cut(s) 321, 716
BseNI ACTGG 7 cut(s) 244, 525, 966, 1053, 1302, 1395, 1412
BseRI GAGGAG 2 cut(s) 623, 1008
BseSI GKGCMC 1 cut(s) 1412
BseXI GCAGC 8 cut(s) 27, 51, 62, 115, 166, 169, 192, 296
BseYI CCCAGC 4 cut(s) 34, 99, 387, 484
BsgI GTGCAG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 5 cut(s) 82, 110, 404, 758, 1410
BshNI GGYRCC 1 cut(s) 277
BshTI ACCGGT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 3 cut(s) 11, 275, 368
BslFI GGGAC 3 cut(s) 5, 29, 983
BslI CCNNNNNNNGG 3 cut(s) 106, 239, 1070
BsmAI GTCTC 3 cut(s) 167, 172, 515
BsmBI CGTCTC 2 cut(s) 167, 172
BsmFI GGGAC 3 cut(s) 5, 29, 983
BsmI GAATGC 2 cut(s) 834, 845
BsnI GGCC 5 cut(s) 82, 110, 404, 758, 1410
Bsp119I TTCGAA 2 cut(s) 381, 1235
Bsp120I GGGCCC 1 cut(s) 1408
Bsp1286I GDGCHC 1 cut(s) 1412
Bsp143I GATC 6 cut(s) 343, 419, 666, 675, 829, 943
Bsp19I CCATGG 2 cut(s) 890, 1464
BspACI CCGC 6 cut(s) 73, 459, 788, 1285, 1304, 1357
BspANI GGCC 5 cut(s) 82, 110, 404, 758, 1410
BspCNI CTCAG 2 cut(s) 322, 715
BspLI GGNNCC 4 cut(s) 279, 525, 945, 1410
BspMAI CTGCAG 3 cut(s) 80, 210, 286
BspMI ACCTGC 2 cut(s) 199, 289
BspPI GGATC 3 cut(s) 427, 938, 951
BspT104I TTCGAA 2 cut(s) 381, 1235
BspT107I GGYRCC 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 7 cut(s) 244, 525, 966, 1053, 1302, 1395, 1412
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 7 cut(s) 149, 399, 890, 1002, 1164, 1464, 1514
BssMI GATC 6 cut(s) 343, 419, 666, 675, 829, 943
BssNI GRCGYC 1 cut(s) 1042
BssT1I CCWWGG 2 cut(s) 890, 1464
Bst2UI CCWGG 4 cut(s) 151, 1004, 1166, 1516
Bst4CI ACNGT 5 cut(s) 509, 853, 912, 975, 1503
Bst6I CTCTTC 3 cut(s) 792, 1061, 1487
BstACI GRCGYC 1 cut(s) 1042
BstAPI GCANNNNNTGC 3 cut(s) 84, 1141, 1192
BstBI TTCGAA 2 cut(s) 381, 1235
BstC8I GCNNGC 5 cut(s) 80, 108, 255, 406, 906
BstDEI CTNAG 2 cut(s) 330, 702
BstDSI CCRYGG 3 cut(s) 399, 890, 1464
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 6 cut(s) 394, 669, 720, 937, 1312, 1512
BstHHI GCGC 2 cut(s) 89, 1035
BstKTI GATC 6 cut(s) 346, 422, 669, 678, 832, 946
BstMAI GTCTC 3 cut(s) 167, 172, 515
BstMBI GATC 6 cut(s) 343, 419, 666, 675, 829, 943
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 5 cut(s) 75, 84, 1141, 1192, 1363
BstNI CCWGG 4 cut(s) 151, 1004, 1166, 1516
BstNSI RCATGY 2 cut(s) 34, 908
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 6 cut(s) 10, 149, 367, 1002, 1164, 1514
BstSFI CTRYAG 3 cut(s) 76, 206, 282
BstSLI GKGCMC 1 cut(s) 1412
BstV1I GCAGC 8 cut(s) 27, 51, 62, 115, 166, 169, 192, 296
BstV2I GAAGAC 1 cut(s) 1298
BstX2I RGATCY 2 cut(s) 419, 943
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 2 cut(s) 419, 943
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 5 cut(s) 82, 110, 404, 758, 1410
BtgI CCRYGG 3 cut(s) 399, 890, 1464
BtsCI GGATG 6 cut(s) 394, 669, 720, 937, 1312, 1512
BtsI GCAGTG 2 cut(s) 471, 492
BtsIMutI CAGTG 9 cut(s) 237, 471, 492, 849, 908, 959, 1295, 1388, 1419
BveI ACCTGC 2 cut(s) 199, 289
Cac8I GCNNGC 5 cut(s) 80, 108, 255, 406, 906
CfoI GCGC 2 cut(s) 89, 1035
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 1222, 1408, 1409
CseI GACGC 4 cut(s) 7, 31, 149, 442
Csp6I GTAC 2 cut(s) 278, 1180
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 9 cut(s) 7, 31, 347, 498, 662, 891, 905, 1226, 1465
CviQI GTAC 2 cut(s) 278, 1180
DdeI CTNAG 2 cut(s) 330, 702
DpnI GATC 6 cut(s) 345, 421, 668, 677, 831, 945
DpnII GATC 6 cut(s) 343, 419, 666, 675, 829, 943
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 3 cut(s) 792, 1061, 1487
EarI CTCTTC 3 cut(s) 792, 1061, 1487
EciI GGCGGA 1 cut(s) 1319
Eco130I CCWWGG 2 cut(s) 890, 1464
Eco147I AGGCCT 3 cut(s) 82, 110, 758
Eco24I GRGCYC 1 cut(s) 1412
Eco32I GATATC 2 cut(s) 804, 1161
Eco47I GGWCC 1 cut(s) 1222
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 4 cut(s) 149, 1002, 1164, 1514
EcoRV GATATC 2 cut(s) 804, 1161
EcoT14I CCWWGG 2 cut(s) 890, 1464
EcoT38I GRGCYC 1 cut(s) 1412
ErhI CCWWGG 2 cut(s) 890, 1464
Esp3I CGTCTC 2 cut(s) 167, 172
FaeI CATG 9 cut(s) 10, 34, 350, 501, 665, 894, 908, 1229, 1468
FaqI GGGAC 3 cut(s) 5, 29, 983
FatI CATG 9 cut(s) 6, 30, 346, 497, 661, 890, 904, 1225, 1464
FblI GTMKAC 1 cut(s) 861
Fnu4HI GCNGC 8 cut(s) 16, 40, 76, 104, 155, 158, 206, 285
FokI GGATG 6 cut(s) 381, 656, 727, 944, 1319, 1519
FriOI GRGCYC 1 cut(s) 1412
Fsp4HI GCNGC 8 cut(s) 16, 40, 76, 104, 155, 158, 206, 285
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 88, 1034
GluI GCNGC 8 cut(s) 16, 40, 76, 104, 155, 158, 206, 285
GsaI CCCAGC 4 cut(s) 38, 103, 391, 488
GsuI CTGGAG 1 cut(s) 1412
HaeIII GGCC 5 cut(s) 82, 110, 404, 758, 1410
HapII CCGG 3 cut(s) 11, 275, 368
HgaI GACGC 4 cut(s) 7, 31, 149, 442
HhaI GCGC 2 cut(s) 89, 1035
Hin1I GRCGYC 1 cut(s) 1042
Hin1II CATG 9 cut(s) 10, 34, 350, 501, 665, 894, 908, 1229, 1468
Hin6I GCGC 2 cut(s) 87, 1033
HinP1I GCGC 2 cut(s) 87, 1033
HincII GTYRAC 2 cut(s) 921, 1046
HindII GTYRAC 2 cut(s) 921, 1046
HinfI GANTC 7 cut(s) 383, 611, 982, 996, 1116, 1451, 1510
HpaII CCGG 3 cut(s) 11, 275, 368
HphI GGTGA 4 cut(s) 138, 254, 802, 1165
Hpy166II GTNNAC 4 cut(s) 732, 862, 921, 1046
Hpy188I TCNGA 5 cut(s) 705, 943, 1121, 1270, 1277
Hpy188III TCNNGA 6 cut(s) 46, 374, 673, 979, 1063, 1253
Hpy8I GTNNAC 4 cut(s) 732, 862, 921, 1046
Hpy99I CGWCG 2 cut(s) 931, 1503
HpyAV CCTTC 2 cut(s) 787, 1336
HpyCH4III ACNGT 5 cut(s) 509, 853, 912, 975, 1503
HpyCH4IV ACGT 1 cut(s) 1042
HpyF10VI GCNNNNNNNGC 5 cut(s) 75, 84, 1141, 1192, 1363
HpyF3I CTNAG 2 cut(s) 330, 702
HpySE526I ACGT 1 cut(s) 1042
Hsp92I GRCGYC 1 cut(s) 1042
Hsp92II CATG 9 cut(s) 10, 34, 350, 501, 665, 894, 908, 1229, 1468
HspAI GCGC 2 cut(s) 87, 1033
KpnI GGTACC 1 cut(s) 281
Kzo9I GATC 6 cut(s) 343, 419, 666, 675, 829, 943
LmnI GCTCC 3 cut(s) 126, 1098, 1393
Lsp1109I GCAGC 8 cut(s) 27, 51, 62, 115, 166, 169, 192, 296
LweI GCATC 2 cut(s) 673, 1195
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 1042
MaeIII GTNAC 3 cut(s) 211, 503, 957
MalI GATC 6 cut(s) 345, 421, 668, 677, 831, 945
MboI GATC 6 cut(s) 343, 419, 666, 675, 829, 943
MboII GAAGA 8 cut(s) 692, 787, 809, 1030, 1078, 1097, 1303, 1504
MfeI CAATTG 1 cut(s) 353
MflI RGATCY 2 cut(s) 419, 943
MhlI GDGCHC 1 cut(s) 1412
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 8 cut(s) 353, 603, 635, 707, 1021, 1237, 1324, 1331
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 3 cut(s) 620, 1005, 1125
MmeI TCCRAC 1 cut(s) 1099
Mox20I TGGCCA 1 cut(s) 404
MroXI GAANNNNTTC 2 cut(s) 528, 728
MscI TGGCCA 1 cut(s) 404
MseI TTAA 5 cut(s) 432, 575, 747, 900, 1217
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 3 cut(s) 11, 275, 368
MspR9I CCNGG 6 cut(s) 12, 151, 369, 1004, 1166, 1516
MunI CAATTG 1 cut(s) 353
Mva1269I GAATGC 2 cut(s) 834, 845
MvaI CCWGG 4 cut(s) 151, 1004, 1166, 1516
MwoI GCNNNNNNNGC 5 cut(s) 75, 84, 1141, 1192, 1363
NciI CCSGG 2 cut(s) 12, 369
NcoI CCATGG 2 cut(s) 890, 1464
NdeII GATC 6 cut(s) 343, 419, 666, 675, 829, 943
NlaIII CATG 9 cut(s) 10, 34, 350, 501, 665, 894, 908, 1229, 1468
NlaIV GGNNCC 4 cut(s) 279, 525, 945, 1410
NmuCI GTSAC 2 cut(s) 503, 957
NspI RCATGY 2 cut(s) 34, 908
NspV TTCGAA 2 cut(s) 381, 1235
PaeI GCATGC 1 cut(s) 908
PceI AGGCCT 3 cut(s) 82, 110, 758
PctI GAATGC 2 cut(s) 834, 845
PdmI GAANNNNTTC 2 cut(s) 528, 728
PfeI GAWTC 4 cut(s) 383, 982, 1451, 1510
PflFI GACNNNGTC 1 cut(s) 1226
PflMI CCANNNNNTGG 1 cut(s) 239
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 8 cut(s) 17, 41, 77, 105, 156, 159, 207, 286
PleI GAGTC 3 cut(s) 619, 1004, 1124
PpsI GAGTC 3 cut(s) 619, 1004, 1124
Psp6I CCWGG 4 cut(s) 149, 1002, 1164, 1514
PspEI GGTNACC 1 cut(s) 211
PspFI CCCAGC 4 cut(s) 34, 99, 387, 484
PspGI CCWGG 4 cut(s) 149, 1002, 1164, 1514
PspN4I GGNNCC 4 cut(s) 279, 525, 945, 1410
PspOMI GGGCCC 1 cut(s) 1408
PspPI GGNCC 3 cut(s) 1222, 1408, 1409
PstI CTGCAG 3 cut(s) 80, 210, 286
PsuI RGATCY 2 cut(s) 419, 943
PsyI GACNNNGTC 1 cut(s) 1226
RsaI GTAC 2 cut(s) 279, 1181
RsaNI GTAC 2 cut(s) 278, 1180
SaqAI TTAA 5 cut(s) 432, 575, 747, 900, 1217
SatI GCNGC 8 cut(s) 16, 40, 76, 104, 155, 158, 206, 285
Sau3AI GATC 6 cut(s) 343, 419, 666, 675, 829, 943
Sau96I GGNCC 3 cut(s) 1222, 1408, 1409
SchI GAGTC 3 cut(s) 620, 1005, 1125
ScrFI CCNGG 6 cut(s) 12, 151, 369, 1004, 1166, 1516
SduI GDGCHC 1 cut(s) 1412
SfaNI GCATC 2 cut(s) 673, 1195
SfcI CTRYAG 3 cut(s) 76, 206, 282
SfuI TTCGAA 2 cut(s) 381, 1235
SinI GGWCC 1 cut(s) 1222
SphI GCATGC 1 cut(s) 908
Sse9I AATT 8 cut(s) 353, 603, 635, 707, 1021, 1237, 1324, 1331
SseBI AGGCCT 3 cut(s) 82, 110, 758
SsiI CCGC 6 cut(s) 73, 459, 788, 1285, 1304, 1357
SspMI CTAG 1 cut(s) 374
StuI AGGCCT 3 cut(s) 82, 110, 758
StyD4I CCNGG 6 cut(s) 10, 149, 367, 1002, 1164, 1514
StyI CCWWGG 2 cut(s) 890, 1464
TaaI ACNGT 5 cut(s) 509, 853, 912, 975, 1503
TaiI ACGT 1 cut(s) 1045
TaqI TCGA 5 cut(s) 381, 601, 678, 1235, 1320
TaqII GACCGA 2 cut(s) 356, 525
TasI AATT 8 cut(s) 353, 603, 635, 707, 1021, 1237, 1324, 1331
TfiI GAWTC 4 cut(s) 383, 982, 1451, 1510
Tru1I TTAA 5 cut(s) 432, 575, 747, 900, 1217
Tru9I TTAA 5 cut(s) 432, 575, 747, 900, 1217
TscAI CASTG 9 cut(s) 244, 471, 499, 856, 915, 966, 1302, 1395, 1419
TseFI GTSAC 2 cut(s) 503, 957
TseI GCWGC 8 cut(s) 15, 39, 75, 103, 154, 157, 205, 284
Tsp45I GTSAC 2 cut(s) 503, 957
TspDTI ATGAA 6 cut(s) 41, 65, 383, 521, 788, 1523
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 9 cut(s) 244, 471, 499, 856, 915, 966, 1302, 1395, 1419
Tth111I GACNNNGTC 1 cut(s) 1226
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 1222
XapI RAATTY 2 cut(s) 707, 1021
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 2 cut(s) 34, 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 1471
XmiI GTMKAC 1 cut(s) 861
XmnI GAANNNNTTC 2 cut(s) 528, 728
XspI CTAG 1 cut(s) 374
ZraI GACGTC 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.