Domain of unknown function (DUF4283)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 110 - 149 | 6.2e-07 | Zinc knuckle |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 986 |
| AccB1I | GGYRCC | 1 cut(s) | 986 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 377 |
| AccI | GTMKAC | 1 cut(s) | 247 |
| AciI | CCGC | 1 cut(s) | 400 |
| AclWI | GGATC | 1 cut(s) | 792 |
| AcoI | YGGCCR | 1 cut(s) | 639 |
| AcsI | RAATTY | 2 cut(s) | 209, 419 |
| AfaI | GTAC | 2 cut(s) | 217, 988 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 377, 569, 883 |
| AflIII | ACRYGT | 1 cut(s) | 673 |
| AgsI | TTSAA | 2 cut(s) | 497, 1030 |
| AjiI | CACGTC | 2 cut(s) | 22, 645 |
| AjnI | CCWGG | 1 cut(s) | 989 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 495, 527 |
| AluBI | AGCT | 3 cut(s) | 163, 579, 905 |
| AluI | AGCT | 3 cut(s) | 163, 579, 905 |
| Alw26I | GTCTC | 2 cut(s) | 337, 707 |
| AlwI | GGATC | 1 cut(s) | 792 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 773 |
| AoxI | GGCC | 3 cut(s) | 506, 560, 639 |
| ApeKI | GCWGC | 3 cut(s) | 230, 590, 872 |
| ApoI | RAATTY | 2 cut(s) | 209, 419 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1004, 1036 |
| Asp718I | GGTACC | 1 cut(s) | 986 |
| AspS9I | GGNCC | 1 cut(s) | 560 |
| AsuC2I | CCSGG | 1 cut(s) | 650 |
| AsuHPI | GGTGA | 5 cut(s) | 392, 617, 664, 899, 923 |
| AxyI | CCTNAGG | 1 cut(s) | 524 |
| BanI | GGYRCC | 1 cut(s) | 986 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| BbvI | GCAGC | 3 cut(s) | 242, 602, 884 |
| BccI | CCATC | 4 cut(s) | 436, 602, 614, 727 |
| BceAI | ACGGC | 2 cut(s) | 521, 654 |
| BciT130I | CCWGG | 1 cut(s) | 991 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BcnI | CCSGG | 1 cut(s) | 650 |
| BcoDI | GTCTC | 2 cut(s) | 337, 707 |
| BfaI | CTAG | 2 cut(s) | 456, 788 |
| BfmI | CTRYAG | 1 cut(s) | 595 |
| BisI | GCNGC | 3 cut(s) | 231, 591, 873 |
| BlsI | GCNGC | 3 cut(s) | 232, 592, 874 |
| Bme1390I | CCNGG | 2 cut(s) | 650, 991 |
| BmgBI | CACGTC | 2 cut(s) | 22, 645 |
| BmgT120I | GGNCC | 1 cut(s) | 560 |
| BmiI | GGNNCC | 1 cut(s) | 988 |
| BmrFI | CCNGG | 2 cut(s) | 650, 991 |
| BmrI | ACTGGG | 1 cut(s) | 260 |
| BmsI | GCATC | 1 cut(s) | 859 |
| BmuI | ACTGGG | 1 cut(s) | 260 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpuMI | CCSGG | 1 cut(s) | 650 |
| BsaJI | CCNNGG | 4 cut(s) | 92, 563, 648, 990 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 152, 182 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 377, 569, 883 |
| Bse1I | ACTGG | 1 cut(s) | 255 |
| Bse21I | CCTNAGG | 1 cut(s) | 524 |
| BseBI | CCWGG | 1 cut(s) | 991 |
| BseDI | CCNNGG | 4 cut(s) | 92, 563, 648, 990 |
| BseGI | GGATG | 4 cut(s) | 271, 283, 334, 544 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 377, 569, 883 |
| BseMII | CTCAG | 1 cut(s) | 538 |
| BseNI | ACTGG | 1 cut(s) | 255 |
| BseXI | GCAGC | 3 cut(s) | 242, 602, 884 |
| BseYI | CCCAGC | 1 cut(s) | 163 |
| BshFI | GGCC | 3 cut(s) | 508, 562, 641 |
| BshNI | GGYRCC | 1 cut(s) | 986 |
| BsiSI | CCGG | 2 cut(s) | 416, 650 |
| BslFI | GGGAC | 2 cut(s) | 110, 631 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 377, 569, 883 |
| BsmAI | GTCTC | 2 cut(s) | 337, 707 |
| BsmFI | GGGAC | 2 cut(s) | 110, 631 |
| BsnI | GGCC | 3 cut(s) | 508, 562, 641 |
| Bsp143I | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| BspACI | CCGC | 1 cut(s) | 400 |
| BspANI | GGCC | 3 cut(s) | 508, 562, 641 |
| BspCNI | CTCAG | 1 cut(s) | 537 |
| BspLI | GGNNCC | 1 cut(s) | 988 |
| BspPI | GGATC | 1 cut(s) | 792 |
| BspT107I | GGYRCC | 1 cut(s) | 986 |
| BsrI | ACTGG | 1 cut(s) | 255 |
| BssECI | CCNNGG | 4 cut(s) | 92, 563, 648, 990 |
| BssMI | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| BssNAI | GTATAC | 1 cut(s) | 248 |
| BssT1I | CCWWGG | 1 cut(s) | 92 |
| Bst1107I | GTATAC | 1 cut(s) | 248 |
| Bst2UI | CCWGG | 1 cut(s) | 991 |
| Bst4CI | ACNGT | 3 cut(s) | 86, 411, 846 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstC8I | GCNNGC | 2 cut(s) | 46, 818 |
| BstDEI | CTNAG | 1 cut(s) | 524 |
| BstF5I | GGATG | 4 cut(s) | 271, 283, 334, 544 |
| BstKTI | GATC | 6 cut(s) | 15, 34, 385, 393, 663, 787 |
| BstMAI | GTCTC | 2 cut(s) | 337, 707 |
| BstMBI | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 590 |
| BstNI | CCWGG | 1 cut(s) | 991 |
| BstNSI | RCATGY | 1 cut(s) | 677 |
| BstSCI | CCNGG | 2 cut(s) | 648, 989 |
| BstSFI | CTRYAG | 1 cut(s) | 595 |
| BstV1I | GCAGC | 3 cut(s) | 242, 602, 884 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BstX2I | RGATCY | 1 cut(s) | 784 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 434 |
| BstYI | RGATCY | 1 cut(s) | 784 |
| BstZ17I | GTATAC | 1 cut(s) | 248 |
| Bsu36I | CCTNAGG | 1 cut(s) | 524 |
| BsuRI | GGCC | 3 cut(s) | 508, 562, 641 |
| BtgZI | GCGATG | 1 cut(s) | 746 |
| BtrI | CACGTC | 2 cut(s) | 22, 645 |
| BtsCI | GGATG | 4 cut(s) | 271, 283, 334, 544 |
| BtsI | GCAGTG | 2 cut(s) | 180, 631 |
| BtsIMutI | CAGTG | 5 cut(s) | 22, 153, 180, 631, 761 |
| Cac8I | GCNNGC | 2 cut(s) | 46, 818 |
| CaiI | CAGNNNCTG | 1 cut(s) | 773 |
| Cfr13I | GGNCC | 1 cut(s) | 560 |
| CseI | GACGC | 2 cut(s) | 311, 338 |
| Csp6I | GTAC | 2 cut(s) | 216, 987 |
| CviAII | CATG | 4 cut(s) | 67, 674, 688, 802 |
| CviQI | GTAC | 2 cut(s) | 216, 987 |
| DdeI | CTNAG | 1 cut(s) | 524 |
| DpnI | GATC | 6 cut(s) | 14, 33, 384, 392, 662, 786 |
| DpnII | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| DraI | TTTAAA | 1 cut(s) | 852 |
| EaeI | YGGCCR | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| Eco130I | CCWWGG | 1 cut(s) | 92 |
| Eco81I | CCTNAGG | 1 cut(s) | 524 |
| EcoRII | CCWGG | 1 cut(s) | 989 |
| EcoT14I | CCWWGG | 1 cut(s) | 92 |
| ErhI | CCWWGG | 1 cut(s) | 92 |
| FaeI | CATG | 4 cut(s) | 70, 677, 691, 805 |
| FaqI | GGGAC | 2 cut(s) | 110, 631 |
| FatI | CATG | 4 cut(s) | 66, 673, 687, 801 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| FblI | GTMKAC | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 3 cut(s) | 231, 591, 873 |
| FokI | GGATG | 4 cut(s) | 278, 290, 341, 551 |
| Fsp4HI | GCNGC | 3 cut(s) | 231, 591, 873 |
| FspBI | CTAG | 2 cut(s) | 456, 788 |
| GluI | GCNGC | 3 cut(s) | 231, 591, 873 |
| GsaI | CCCAGC | 1 cut(s) | 167 |
| HaeIII | GGCC | 3 cut(s) | 508, 562, 641 |
| HapII | CCGG | 2 cut(s) | 416, 650 |
| HgaI | GACGC | 2 cut(s) | 311, 338 |
| Hin1II | CATG | 4 cut(s) | 70, 677, 691, 805 |
| HincII | GTYRAC | 2 cut(s) | 364, 834 |
| HindII | GTYRAC | 2 cut(s) | 364, 834 |
| HindIII | AAGCTT | 1 cut(s) | 903 |
| HinfI | GANTC | 4 cut(s) | 255, 481, 497, 715 |
| HpaI | GTTAAC | 2 cut(s) | 364, 834 |
| HpaII | CCGG | 2 cut(s) | 416, 650 |
| HphI | GGTGA | 5 cut(s) | 392, 617, 664, 899, 923 |
| Hpy166II | GTNNAC | 5 cut(s) | 89, 248, 364, 491, 834 |
| Hpy188I | TCNGA | 3 cut(s) | 502, 519, 899 |
| Hpy188III | TCNNGA | 2 cut(s) | 326, 371 |
| Hpy8I | GTNNAC | 5 cut(s) | 89, 248, 364, 491, 834 |
| Hpy99I | CGWCG | 1 cut(s) | 354 |
| HpyAV | CCTTC | 8 cut(s) | 20, 265, 546, 567, 596, 775, 873, 1039 |
| HpyCH4III | ACNGT | 3 cut(s) | 86, 411, 846 |
| HpyCH4IV | ACGT | 2 cut(s) | 21, 644 |
| HpyCH4V | TGCA | 5 cut(s) | 187, 230, 584, 687, 872 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 590 |
| HpyF3I | CTNAG | 1 cut(s) | 524 |
| HpySE526I | ACGT | 2 cut(s) | 21, 644 |
| Hsp92II | CATG | 4 cut(s) | 70, 677, 691, 805 |
| KpnI | GGTACC | 1 cut(s) | 990 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| KspAI | GTTAAC | 2 cut(s) | 364, 834 |
| Kzo9I | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| LmnI | GCTCC | 2 cut(s) | 160, 576 |
| Lsp1109I | GCAGC | 3 cut(s) | 242, 602, 884 |
| LweI | GCATC | 1 cut(s) | 859 |
| MaeI | CTAG | 2 cut(s) | 456, 788 |
| MaeII | ACGT | 2 cut(s) | 21, 644 |
| MaeIII | GTNAC | 1 cut(s) | 17 |
| MalI | GATC | 6 cut(s) | 14, 33, 384, 392, 662, 786 |
| MboI | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| MboII | GAAGA | 3 cut(s) | 74, 82, 1048 |
| MfeI | CAATTG | 1 cut(s) | 386 |
| MflI | RGATCY | 1 cut(s) | 784 |
| MluCI | AATT | 5 cut(s) | 114, 209, 386, 419, 923 |
| MlyI | GAGTC | 2 cut(s) | 264, 709 |
| MmeI | TCCRAC | 3 cut(s) | 476, 550, 865 |
| MseI | TTAA | 7 cut(s) | 113, 261, 363, 827, 833, 851, 972 |
| MspI | CCGG | 2 cut(s) | 416, 650 |
| MspR9I | CCNGG | 2 cut(s) | 650, 991 |
| MunI | CAATTG | 1 cut(s) | 386 |
| MvaI | CCWGG | 1 cut(s) | 991 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 590 |
| NciI | CCSGG | 1 cut(s) | 650 |
| NdeII | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| NlaIII | CATG | 4 cut(s) | 70, 677, 691, 805 |
| NlaIV | GGNNCC | 1 cut(s) | 988 |
| NmeAIII | GCCGAG | 1 cut(s) | 588 |
| NmuCI | GTSAC | 1 cut(s) | 17 |
| NspI | RCATGY | 1 cut(s) | 677 |
| PciI | ACATGT | 1 cut(s) | 673 |
| PfeI | GAWTC | 2 cut(s) | 481, 497 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 377 |
| PkrI | GCNGC | 3 cut(s) | 232, 592, 874 |
| PleI | GAGTC | 2 cut(s) | 263, 709 |
| PpsI | GAGTC | 2 cut(s) | 263, 709 |
| PscI | ACATGT | 1 cut(s) | 673 |
| Psp6I | CCWGG | 1 cut(s) | 989 |
| PspFI | CCCAGC | 1 cut(s) | 163 |
| PspGI | CCWGG | 1 cut(s) | 989 |
| PspN4I | GGNNCC | 1 cut(s) | 988 |
| PspPI | GGNCC | 1 cut(s) | 560 |
| PstNI | CAGNNNCTG | 1 cut(s) | 773 |
| PsuI | RGATCY | 1 cut(s) | 784 |
| RsaI | GTAC | 2 cut(s) | 217, 988 |
| RsaNI | GTAC | 2 cut(s) | 216, 987 |
| SaqAI | TTAA | 7 cut(s) | 113, 261, 363, 827, 833, 851, 972 |
| SatI | GCNGC | 3 cut(s) | 231, 591, 873 |
| Sau3AI | GATC | 6 cut(s) | 12, 31, 382, 390, 660, 784 |
| Sau96I | GGNCC | 1 cut(s) | 560 |
| SchI | GAGTC | 2 cut(s) | 264, 709 |
| ScrFI | CCNGG | 2 cut(s) | 650, 991 |
| SfaNI | GCATC | 1 cut(s) | 859 |
| SfcI | CTRYAG | 1 cut(s) | 595 |
| Sse9I | AATT | 5 cut(s) | 114, 209, 386, 419, 923 |
| SsiI | CCGC | 1 cut(s) | 400 |
| SspI | AATATT | 1 cut(s) | 724 |
| SspMI | CTAG | 2 cut(s) | 456, 788 |
| StyD4I | CCNGG | 2 cut(s) | 648, 989 |
| StyI | CCWWGG | 1 cut(s) | 92 |
| TaaI | ACNGT | 3 cut(s) | 86, 411, 846 |
| TaiI | ACGT | 2 cut(s) | 24, 647 |
| TaqI | TCGA | 2 cut(s) | 352, 393 |
| TasI | AATT | 5 cut(s) | 114, 209, 386, 419, 923 |
| TfiI | GAWTC | 2 cut(s) | 481, 497 |
| Tru1I | TTAA | 7 cut(s) | 113, 261, 363, 827, 833, 851, 972 |
| Tru9I | TTAA | 7 cut(s) | 113, 261, 363, 827, 833, 851, 972 |
| TscAI | CASTG | 5 cut(s) | 22, 153, 180, 631, 768 |
| TseFI | GTSAC | 1 cut(s) | 17 |
| TseI | GCWGC | 3 cut(s) | 230, 590, 872 |
| Tsp45I | GTSAC | 1 cut(s) | 17 |
| TspDTI | ATGAA | 3 cut(s) | 41, 83, 420 |
| TspRI | CASTG | 5 cut(s) | 22, 153, 180, 631, 768 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 377 |
| XapI | RAATTY | 2 cut(s) | 209, 419 |
| XceI | RCATGY | 1 cut(s) | 677 |
| XmiI | GTMKAC | 1 cut(s) | 247 |
| XspI | CTAG | 2 cut(s) | 456, 788 |