ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 603 |
| AccB1I | GGYRCC | 1 cut(s) | 537 |
| AccII | CGCG | 2 cut(s) | 284, 875 |
| AciI | CCGC | 2 cut(s) | 831, 875 |
| AclWI | GGATC | 2 cut(s) | 854, 867 |
| AcoI | YGGCCR | 3 cut(s) | 35, 120, 203 |
| AcsI | RAATTY | 3 cut(s) | 218, 278, 623 |
| AcyI | GRCGYC | 2 cut(s) | 722, 758 |
| AfeI | AGCGCT | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 79, 184, 368 |
| AflIII | ACRYGT | 1 cut(s) | 807 |
| AgsI | TTSAA | 3 cut(s) | 21, 337, 748 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 877 |
| AjnI | CCWGG | 1 cut(s) | 145 |
| AleI | CACNNNNGTG | 1 cut(s) | 449 |
| AluBI | AGCT | 2 cut(s) | 173, 701 |
| AluI | AGCT | 2 cut(s) | 173, 701 |
| Alw26I | GTCTC | 2 cut(s) | 35, 821 |
| AlwI | GGATC | 2 cut(s) | 854, 867 |
| Aor51HI | AGCGCT | 1 cut(s) | 290 |
| AoxI | GGCC | 3 cut(s) | 35, 120, 203 |
| ApeKI | GCWGC | 1 cut(s) | 286 |
| ApoI | RAATTY | 3 cut(s) | 218, 278, 623 |
| AspLEI | GCGC | 3 cut(s) | 286, 291, 444 |
| AsuC2I | CCSGG | 2 cut(s) | 185, 848 |
| AsuHPI | GGTGA | 2 cut(s) | 389, 689 |
| AsuII | TTCGAA | 1 cut(s) | 797 |
| BaeGI | GKGCMC | 1 cut(s) | 540 |
| BamHI | GGATCC | 1 cut(s) | 859 |
| BanI | GGYRCC | 1 cut(s) | 537 |
| BbsI | GAAGAC | 1 cut(s) | 753 |
| BbvI | GCAGC | 1 cut(s) | 298 |
| BccI | CCATC | 1 cut(s) | 674 |
| BceAI | ACGGC | 1 cut(s) | 254 |
| BciT130I | CCWGG | 1 cut(s) | 147 |
| BcnI | CCSGG | 2 cut(s) | 185, 848 |
| BcoDI | GTCTC | 2 cut(s) | 35, 821 |
| BfaI | CTAG | 2 cut(s) | 546, 702 |
| BfmI | CTRYAG | 1 cut(s) | 84 |
| BfoI | RGCGCY | 1 cut(s) | 292 |
| BisI | GCNGC | 1 cut(s) | 287 |
| BlsI | GCNGC | 1 cut(s) | 288 |
| Bme1390I | CCNGG | 3 cut(s) | 147, 185, 848 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 877 |
| BmiI | GGNNCC | 2 cut(s) | 539, 861 |
| BmrFI | CCNGG | 3 cut(s) | 147, 185, 848 |
| BmsI | GCATC | 2 cut(s) | 170, 552 |
| BpiI | GAAGAC | 1 cut(s) | 753 |
| Bpu14I | TTCGAA | 1 cut(s) | 797 |
| BpuMI | CCSGG | 2 cut(s) | 185, 848 |
| BsaAI | YACGTR | 1 cut(s) | 506 |
| BsaHI | GRCGYC | 2 cut(s) | 722, 758 |
| BsaI | GGTCTC | 1 cut(s) | 821 |
| BsaJI | CCNNGG | 3 cut(s) | 145, 326, 362 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 57, 87, 642, 672 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 79, 184, 368 |
| Bse118I | RCCGGY | 1 cut(s) | 224 |
| BseBI | CCWGG | 1 cut(s) | 147 |
| BseDI | CCNNGG | 3 cut(s) | 145, 326, 362 |
| BseGI | GGATG | 1 cut(s) | 723 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 79, 184, 368 |
| BseMII | CTCAG | 1 cut(s) | 389 |
| BseRI | GAGGAG | 4 cut(s) | 105, 175, 178, 282 |
| BseSI | GKGCMC | 1 cut(s) | 540 |
| BseX3I | CGGCCG | 1 cut(s) | 120 |
| BseXI | GCAGC | 1 cut(s) | 298 |
| Bsh1236I | CGCG | 2 cut(s) | 284, 875 |
| Bsh1285I | CGRYCG | 1 cut(s) | 123 |
| BshFI | GGCC | 3 cut(s) | 37, 122, 205 |
| BshNI | GGYRCC | 1 cut(s) | 537 |
| BsiEI | CGRYCG | 1 cut(s) | 123 |
| BsiSI | CCGG | 8 cut(s) | 38, 48, 57, 119, 185, 206, 225, 848 |
| BslFI | GGGAC | 1 cut(s) | 818 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 79, 184, 368 |
| BsmAI | GTCTC | 2 cut(s) | 35, 821 |
| BsmFI | GGGAC | 1 cut(s) | 818 |
| BsmI | GAATGC | 1 cut(s) | 570 |
| BsnI | GGCC | 3 cut(s) | 37, 122, 205 |
| Bso31I | GGTCTC | 1 cut(s) | 821 |
| Bsp119I | TTCGAA | 1 cut(s) | 797 |
| Bsp1286I | GDGCHC | 1 cut(s) | 540 |
| Bsp143I | GATC | 1 cut(s) | 859 |
| Bsp19I | CCATGG | 1 cut(s) | 362 |
| BspACI | CCGC | 2 cut(s) | 831, 875 |
| BspANI | GGCC | 3 cut(s) | 37, 122, 205 |
| BspCNI | CTCAG | 1 cut(s) | 390 |
| BspFNI | CGCG | 2 cut(s) | 284, 875 |
| BspLI | GGNNCC | 2 cut(s) | 539, 861 |
| BspPI | GGATC | 2 cut(s) | 854, 867 |
| BspT104I | TTCGAA | 1 cut(s) | 797 |
| BspT107I | GGYRCC | 1 cut(s) | 537 |
| BspTNI | GGTCTC | 1 cut(s) | 821 |
| BsrFI | RCCGGY | 1 cut(s) | 224 |
| BssAI | RCCGGY | 1 cut(s) | 224 |
| BssECI | CCNNGG | 3 cut(s) | 145, 326, 362 |
| BssMI | GATC | 1 cut(s) | 859 |
| BssNI | GRCGYC | 2 cut(s) | 722, 758 |
| BssT1I | CCWWGG | 1 cut(s) | 362 |
| Bst2UI | CCWGG | 1 cut(s) | 147 |
| Bst4CI | ACNGT | 3 cut(s) | 88, 448, 605 |
| Bst6I | CTCTTC | 2 cut(s) | 239, 438 |
| BstACI | GRCGYC | 2 cut(s) | 722, 758 |
| BstBAI | YACGTR | 1 cut(s) | 506 |
| BstBI | TTCGAA | 1 cut(s) | 797 |
| BstC8I | GCNNGC | 2 cut(s) | 171, 175 |
| BstDEI | CTNAG | 3 cut(s) | 398, 437, 614 |
| BstDSI | CCRYGG | 2 cut(s) | 326, 362 |
| BstF5I | GGATG | 1 cut(s) | 723 |
| BstFNI | CGCG | 2 cut(s) | 284, 875 |
| BstH2I | RGCGCY | 1 cut(s) | 292 |
| BstHHI | GCGC | 3 cut(s) | 286, 291, 444 |
| BstKTI | GATC | 1 cut(s) | 862 |
| BstMAI | GTCTC | 2 cut(s) | 35, 821 |
| BstMBI | GATC | 1 cut(s) | 859 |
| BstMCI | CGRYCG | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNI | CCWGG | 1 cut(s) | 147 |
| BstNSI | RCATGY | 1 cut(s) | 811 |
| BstSCI | CCNGG | 3 cut(s) | 145, 183, 846 |
| BstSFI | CTRYAG | 1 cut(s) | 84 |
| BstSLI | GKGCMC | 1 cut(s) | 540 |
| BstUI | CGCG | 2 cut(s) | 284, 875 |
| BstV1I | GCAGC | 1 cut(s) | 298 |
| BstV2I | GAAGAC | 1 cut(s) | 753 |
| BstX2I | RGATCY | 1 cut(s) | 859 |
| BstYI | RGATCY | 1 cut(s) | 859 |
| BstZI | CGGCCG | 1 cut(s) | 120 |
| BsuRI | GGCC | 3 cut(s) | 37, 122, 205 |
| BtgI | CCRYGG | 2 cut(s) | 326, 362 |
| BtsCI | GGATG | 1 cut(s) | 723 |
| BtsI | GCAGTG | 2 cut(s) | 128, 694 |
| BtsIMutI | CAGTG | 3 cut(s) | 128, 444, 694 |
| Cac8I | GCNNGC | 2 cut(s) | 171, 175 |
| CfoI | GCGC | 3 cut(s) | 286, 291, 444 |
| Cfr10I | RCCGGY | 1 cut(s) | 224 |
| CseI | GACGC | 3 cut(s) | 730, 747, 881 |
| CviAII | CATG | 8 cut(s) | 151, 196, 363, 415, 635, 643, 768, 808 |
| DdeI | CTNAG | 3 cut(s) | 398, 437, 614 |
| DpnI | GATC | 1 cut(s) | 861 |
| DpnII | GATC | 1 cut(s) | 859 |
| DraI | TTTAAA | 1 cut(s) | 490 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 603 |
| DriI | GACNNNNNGTC | 1 cut(s) | 877 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 603 |
| EaeI | YGGCCR | 3 cut(s) | 35, 120, 203 |
| EagI | CGGCCG | 1 cut(s) | 120 |
| Eam1104I | CTCTTC | 2 cut(s) | 239, 438 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 877 |
| EarI | CTCTTC | 2 cut(s) | 239, 438 |
| EclXI | CGGCCG | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 1 cut(s) | 362 |
| Eco31I | GGTCTC | 1 cut(s) | 821 |
| Eco47III | AGCGCT | 1 cut(s) | 290 |
| Eco52I | CGGCCG | 1 cut(s) | 120 |
| EcoRI | GAATTC | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 1 cut(s) | 636 |
| ErhI | CCWWGG | 1 cut(s) | 362 |
| FaeI | CATG | 8 cut(s) | 154, 199, 366, 418, 638, 646, 771, 811 |
| FaqI | GGGAC | 1 cut(s) | 818 |
| FatI | CATG | 8 cut(s) | 150, 195, 362, 414, 634, 642, 767, 807 |
| Fnu4HI | GCNGC | 1 cut(s) | 287 |
| FokI | GGATG | 1 cut(s) | 730 |
| Fsp4HI | GCNGC | 1 cut(s) | 287 |
| FspBI | CTAG | 2 cut(s) | 546, 702 |
| GlaI | GCGC | 3 cut(s) | 285, 290, 443 |
| GluI | GCNGC | 1 cut(s) | 287 |
| HaeII | RGCGCY | 1 cut(s) | 292 |
| HaeIII | GGCC | 3 cut(s) | 37, 122, 205 |
| HapII | CCGG | 8 cut(s) | 38, 48, 57, 119, 185, 206, 225, 848 |
| HgaI | GACGC | 3 cut(s) | 730, 747, 881 |
| HhaI | GCGC | 3 cut(s) | 286, 291, 444 |
| Hin1I | GRCGYC | 2 cut(s) | 722, 758 |
| Hin1II | CATG | 8 cut(s) | 154, 199, 366, 418, 638, 646, 771, 811 |
| Hin6I | GCGC | 3 cut(s) | 284, 289, 442 |
| HinP1I | GCGC | 3 cut(s) | 284, 289, 442 |
| HincII | GTYRAC | 1 cut(s) | 91 |
| HindII | GTYRAC | 1 cut(s) | 91 |
| HinfI | GANTC | 4 cut(s) | 51, 188, 322, 549 |
| HpaII | CCGG | 8 cut(s) | 38, 48, 57, 119, 185, 206, 225, 848 |
| HphI | GGTGA | 2 cut(s) | 389, 689 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 2 cut(s) | 110, 399 |
| Hpy188III | TCNNGA | 2 cut(s) | 260, 518 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| Hpy99I | CGWCG | 1 cut(s) | 69 |
| HpyAV | CCTTC | 5 cut(s) | 27, 244, 384, 577, 731 |
| HpyCH4III | ACNGT | 3 cut(s) | 88, 448, 605 |
| HpyCH4IV | ACGT | 1 cut(s) | 505 |
| HpyCH4V | TGCA | 4 cut(s) | 133, 356, 634, 771 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 3 cut(s) | 398, 437, 614 |
| HpySE526I | ACGT | 1 cut(s) | 505 |
| Hsp92I | GRCGYC | 2 cut(s) | 722, 758 |
| Hsp92II | CATG | 8 cut(s) | 154, 199, 366, 418, 638, 646, 771, 811 |
| HspAI | GCGC | 3 cut(s) | 284, 289, 442 |
| Kzo9I | GATC | 1 cut(s) | 859 |
| Lsp1109I | GCAGC | 1 cut(s) | 298 |
| LweI | GCATC | 2 cut(s) | 170, 552 |
| MaeI | CTAG | 2 cut(s) | 546, 702 |
| MaeII | ACGT | 1 cut(s) | 505 |
| MaeIII | GTNAC | 1 cut(s) | 319 |
| MalI | GATC | 1 cut(s) | 861 |
| MboI | GATC | 1 cut(s) | 859 |
| MboII | GAAGA | 6 cut(s) | 227, 243, 256, 425, 599, 753 |
| MflI | RGATCY | 1 cut(s) | 859 |
| MhlI | GDGCHC | 1 cut(s) | 540 |
| MluCI | AATT | 5 cut(s) | 27, 218, 278, 623, 706 |
| MlyI | GAGTC | 1 cut(s) | 316 |
| Mph1103I | ATGCAT | 1 cut(s) | 636 |
| MseI | TTAA | 2 cut(s) | 405, 489 |
| MslI | CAYNNNNRTG | 2 cut(s) | 449, 504 |
| MspI | CCGG | 8 cut(s) | 38, 48, 57, 119, 185, 206, 225, 848 |
| MspR9I | CCNGG | 3 cut(s) | 147, 185, 848 |
| MteI | GCGCNGCGC | 1 cut(s) | 287 |
| Mva1269I | GAATGC | 1 cut(s) | 570 |
| MvaI | CCWGG | 1 cut(s) | 147 |
| MvnI | CGCG | 2 cut(s) | 284, 875 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NciI | CCSGG | 2 cut(s) | 185, 848 |
| NcoI | CCATGG | 1 cut(s) | 362 |
| NdeII | GATC | 1 cut(s) | 859 |
| NlaIII | CATG | 8 cut(s) | 154, 199, 366, 418, 638, 646, 771, 811 |
| NlaIV | GGNNCC | 2 cut(s) | 539, 861 |
| NmeAIII | GCCGAG | 1 cut(s) | 148 |
| NmuCI | GTSAC | 1 cut(s) | 319 |
| NsiI | ATGCAT | 1 cut(s) | 636 |
| NspI | RCATGY | 1 cut(s) | 811 |
| NspV | TTCGAA | 1 cut(s) | 797 |
| OliI | CACNNNNGTG | 1 cut(s) | 449 |
| PciI | ACATGT | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 73 |
| PctI | GAATGC | 1 cut(s) | 570 |
| PfeI | GAWTC | 3 cut(s) | 51, 188, 549 |
| PfoI | TCCNGGA | 1 cut(s) | 846 |
| PkrI | GCNGC | 1 cut(s) | 288 |
| PleI | GAGTC | 1 cut(s) | 316 |
| PpsI | GAGTC | 1 cut(s) | 316 |
| Ppu21I | YACGTR | 1 cut(s) | 506 |
| PscI | ACATGT | 1 cut(s) | 807 |
| Psp6I | CCWGG | 1 cut(s) | 145 |
| PspGI | CCWGG | 1 cut(s) | 145 |
| PspN4I | GGNNCC | 2 cut(s) | 539, 861 |
| PsuI | RGATCY | 1 cut(s) | 859 |
| RseI | CAYNNNNRTG | 2 cut(s) | 449, 504 |
| SaqAI | TTAA | 2 cut(s) | 405, 489 |
| SatI | GCNGC | 1 cut(s) | 287 |
| Sau3AI | GATC | 1 cut(s) | 859 |
| SchI | GAGTC | 1 cut(s) | 316 |
| ScrFI | CCNGG | 3 cut(s) | 147, 185, 848 |
| SduI | GDGCHC | 1 cut(s) | 540 |
| SfaNI | GCATC | 2 cut(s) | 170, 552 |
| SfcI | CTRYAG | 1 cut(s) | 84 |
| SfuI | TTCGAA | 1 cut(s) | 797 |
| SgrAI | CRCCGGYG | 1 cut(s) | 224 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 449, 504 |
| Sse9I | AATT | 5 cut(s) | 27, 218, 278, 623, 706 |
| SsiI | CCGC | 2 cut(s) | 831, 875 |
| SspMI | CTAG | 2 cut(s) | 546, 702 |
| StyD4I | CCNGG | 3 cut(s) | 145, 183, 846 |
| StyI | CCWWGG | 1 cut(s) | 362 |
| TaaI | ACNGT | 3 cut(s) | 88, 448, 605 |
| TaiI | ACGT | 1 cut(s) | 508 |
| TaqI | TCGA | 4 cut(s) | 64, 664, 797, 881 |
| TasI | AATT | 5 cut(s) | 27, 218, 278, 623, 706 |
| TfiI | GAWTC | 3 cut(s) | 51, 188, 549 |
| Tru1I | TTAA | 2 cut(s) | 405, 489 |
| Tru9I | TTAA | 2 cut(s) | 405, 489 |
| TscAI | CASTG | 3 cut(s) | 135, 451, 694 |
| TseFI | GTSAC | 1 cut(s) | 319 |
| TseI | GCWGC | 1 cut(s) | 286 |
| Tsp45I | GTSAC | 1 cut(s) | 319 |
| TspDTI | ATGAA | 1 cut(s) | 510 |
| TspGWI | ACGGA | 3 cut(s) | 65, 227, 343 |
| TspRI | CASTG | 3 cut(s) | 135, 451, 694 |
| XapI | RAATTY | 3 cut(s) | 218, 278, 623 |
| XceI | RCATGY | 1 cut(s) | 811 |
| XspI | CTAG | 2 cut(s) | 546, 702 |
| Zsp2I | ATGCAT | 1 cut(s) | 636 |