ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 58 - 113 | 1.5e-06 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 59 |
| AccBSI | CCGCTC | 1 cut(s) | 20 |
| AciI | CCGC | 1 cut(s) | 18 |
| AcsI | RAATTY | 1 cut(s) | 215 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AluBI | AGCT | 1 cut(s) | 101 |
| AluI | AGCT | 1 cut(s) | 101 |
| Ama87I | CYCGRG | 1 cut(s) | 145 |
| ApoI | RAATTY | 1 cut(s) | 215 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| AsuNHI | GCTAGC | 1 cut(s) | 97 |
| AvaI | CYCGRG | 1 cut(s) | 145 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BauI | CACGAG | 1 cut(s) | 330 |
| BfaI | CTAG | 1 cut(s) | 98 |
| BfmI | CTRYAG | 2 cut(s) | 23, 338 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeT110I | CYCGRG | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BmiI | GGNNCC | 1 cut(s) | 144 |
| BmrI | ACTGGG | 1 cut(s) | 204 |
| BmtI | GCTAGC | 1 cut(s) | 101 |
| BmuI | ACTGGG | 1 cut(s) | 204 |
| Bsa29I | ATCGAT | 1 cut(s) | 325 |
| Bse1I | ACTGG | 2 cut(s) | 126, 199 |
| BseCI | ATCGAT | 1 cut(s) | 325 |
| BseGI | GGATG | 1 cut(s) | 115 |
| BseNI | ACTGG | 2 cut(s) | 126, 199 |
| BseRI | GAGGAG | 2 cut(s) | 106, 272 |
| BshVI | ATCGAT | 1 cut(s) | 325 |
| BsiHKCI | CYCGRG | 1 cut(s) | 145 |
| BsoBI | CYCGRG | 1 cut(s) | 145 |
| Bsp143I | GATC | 4 cut(s) | 149, 204, 322, 326 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspDI | ATCGAT | 1 cut(s) | 325 |
| BspLI | GGNNCC | 1 cut(s) | 144 |
| BspMAI | CTGCAG | 1 cut(s) | 27 |
| BspOI | GCTAGC | 1 cut(s) | 101 |
| BsrBI | CCGCTC | 1 cut(s) | 20 |
| BsrI | ACTGG | 2 cut(s) | 126, 199 |
| BssMI | GATC | 4 cut(s) | 149, 204, 322, 326 |
| BssSI | CACGAG | 1 cut(s) | 330 |
| Bst2BI | CACGAG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstF5I | GGATG | 1 cut(s) | 115 |
| BstKTI | GATC | 4 cut(s) | 152, 207, 325, 329 |
| BstMBI | GATC | 4 cut(s) | 149, 204, 322, 326 |
| BstSFI | CTRYAG | 2 cut(s) | 23, 338 |
| Bsu15I | ATCGAT | 1 cut(s) | 325 |
| BsuTUI | ATCGAT | 1 cut(s) | 325 |
| BtsCI | GGATG | 1 cut(s) | 115 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| ClaI | ATCGAT | 1 cut(s) | 325 |
| CviJI | RGCY | 3 cut(s) | 97, 101, 175 |
| CviKI_1 | RGCY | 3 cut(s) | 97, 101, 175 |
| DpnI | GATC | 4 cut(s) | 151, 206, 324, 328 |
| DpnII | GATC | 4 cut(s) | 149, 204, 322, 326 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco88I | CYCGRG | 1 cut(s) | 145 |
| EcoO109I | RGGNCCY | 1 cut(s) | 142 |
| FaiI | YATR | 4 cut(s) | 59, 65, 230, 244 |
| FokI | GGATG | 1 cut(s) | 122 |
| FspBI | CTAG | 1 cut(s) | 98 |
| HincII | GTYRAC | 1 cut(s) | 249 |
| HindII | GTYRAC | 1 cut(s) | 249 |
| HinfI | GANTC | 2 cut(s) | 168, 333 |
| Hpy166II | GTNNAC | 2 cut(s) | 249, 264 |
| Hpy188I | TCNGA | 1 cut(s) | 316 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 107, 235, 330 |
| Hpy8I | GTNNAC | 2 cut(s) | 249, 264 |
| HpyAV | CCTTC | 2 cut(s) | 247, 311 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 2 cut(s) | 72, 210 |
| HpyCH4V | TGCA | 1 cut(s) | 25 |
| HpySE526I | ACGT | 2 cut(s) | 72, 210 |
| Kzo9I | GATC | 4 cut(s) | 149, 204, 322, 326 |
| LpnPI | CCDG | 7 cut(s) | 26, 92, 107, 157, 161, 180, 236 |
| MaeI | CTAG | 1 cut(s) | 98 |
| MaeII | ACGT | 2 cut(s) | 72, 210 |
| MalI | GATC | 4 cut(s) | 151, 206, 324, 328 |
| MbiI | CCGCTC | 1 cut(s) | 20 |
| MboI | GATC | 4 cut(s) | 149, 204, 322, 326 |
| MluCI | AATT | 1 cut(s) | 215 |
| MlyI | GAGTC | 1 cut(s) | 342 |
| MmeI | TCCRAC | 1 cut(s) | 58 |
| MnlI | CCTC | 5 cut(s) | 61, 84, 87, 133, 250 |
| MseI | TTAA | 1 cut(s) | 309 |
| NdeII | GATC | 4 cut(s) | 149, 204, 322, 326 |
| NheI | GCTAGC | 1 cut(s) | 97 |
| NlaIV | GGNNCC | 1 cut(s) | 144 |
| PfeI | GAWTC | 1 cut(s) | 168 |
| PleI | GAGTC | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 341 |
| PpuMI | RGGWCCY | 1 cut(s) | 142 |
| PsiI | TTATAA | 1 cut(s) | 59 |
| Psp5II | RGGWCCY | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 1 cut(s) | 144 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PspPPI | RGGWCCY | 1 cut(s) | 142 |
| PstI | CTGCAG | 1 cut(s) | 27 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| Sau3AI | GATC | 4 cut(s) | 149, 204, 322, 326 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| SchI | GAGTC | 1 cut(s) | 342 |
| SetI | ASST | 3 cut(s) | 75, 103, 213 |
| SfcI | CTRYAG | 2 cut(s) | 23, 338 |
| SinI | GGWCC | 1 cut(s) | 142 |
| Sse9I | AATT | 1 cut(s) | 215 |
| SsiI | CCGC | 1 cut(s) | 18 |
| SspMI | CTAG | 1 cut(s) | 98 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 2 cut(s) | 75, 213 |
| TaqI | TCGA | 3 cut(s) | 45, 89, 325 |
| TasI | AATT | 1 cut(s) | 215 |
| TfiI | GAWTC | 1 cut(s) | 168 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 1 cut(s) | 199 |
| TspDTI | ATGAA | 1 cut(s) | 132 |
| TspGWI | ACGGA | 2 cut(s) | 176, 302 |
| TspRI | CASTG | 1 cut(s) | 199 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 215 |
| XspI | CTAG | 1 cut(s) | 98 |