ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 262 |
| AciI | CCGC | 4 cut(s) | 107, 163, 350, 801 |
| AclWI | GGATC | 5 cut(s) | 238, 251, 273, 413, 802 |
| AcoI | YGGCCR | 1 cut(s) | 526 |
| AcsI | RAATTY | 1 cut(s) | 778 |
| AfaI | GTAC | 2 cut(s) | 42, 226 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 253 |
| AflIII | ACRYGT | 1 cut(s) | 497 |
| AgsI | TTSAA | 5 cut(s) | 63, 212, 325, 649, 778 |
| AjnI | CCWGG | 2 cut(s) | 528, 783 |
| AleI | CACNNNNGTG | 1 cut(s) | 163 |
| AluBI | AGCT | 7 cut(s) | 97, 202, 510, 576, 695, 703, 868 |
| AluI | AGCT | 7 cut(s) | 97, 202, 510, 576, 695, 703, 868 |
| Alw21I | GWGCWC | 2 cut(s) | 512, 870 |
| Alw26I | GTCTC | 3 cut(s) | 104, 488, 589 |
| AlwI | GGATC | 5 cut(s) | 238, 251, 273, 413, 802 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 398, 772 |
| Aor13HI | TCCGGA | 1 cut(s) | 262 |
| AoxI | GGCC | 3 cut(s) | 469, 526, 714 |
| ApeKI | GCWGC | 3 cut(s) | 576, 692, 757 |
| ApoI | RAATTY | 1 cut(s) | 778 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 768 |
| AspA2I | CCTAGG | 1 cut(s) | 683 |
| AspS9I | GGNCC | 1 cut(s) | 369 |
| AvaII | GGWCC | 1 cut(s) | 369 |
| AvrII | CCTAGG | 1 cut(s) | 683 |
| BaeGI | GKGCMC | 1 cut(s) | 683 |
| BalI | TGGCCA | 1 cut(s) | 528 |
| BamHI | GGATCC | 1 cut(s) | 243 |
| BanII | GRGCYC | 2 cut(s) | 512, 870 |
| Bbv12I | GWGCWC | 2 cut(s) | 512, 870 |
| BbvI | GCAGC | 3 cut(s) | 563, 704, 744 |
| BccI | CCATC | 2 cut(s) | 142, 401 |
| BceAI | ACGGC | 1 cut(s) | 176 |
| BciT130I | CCWGG | 2 cut(s) | 530, 785 |
| BclI | TGATCA | 1 cut(s) | 630 |
| BcoDI | GTCTC | 3 cut(s) | 104, 488, 589 |
| BfaI | CTAG | 3 cut(s) | 684, 761, 874 |
| BisI | GCNGC | 3 cut(s) | 577, 693, 758 |
| BlnI | CCTAGG | 1 cut(s) | 683 |
| BlsI | GCNGC | 3 cut(s) | 578, 694, 759 |
| Bme1390I | CCNGG | 2 cut(s) | 530, 785 |
| Bme18I | GGWCC | 1 cut(s) | 369 |
| BmgT120I | GGNCC | 1 cut(s) | 369 |
| BmiI | GGNNCC | 3 cut(s) | 245, 258, 624 |
| BmrFI | CCNGG | 2 cut(s) | 530, 785 |
| BmrI | ACTGGG | 1 cut(s) | 302 |
| BmsI | GCATC | 3 cut(s) | 350, 712, 800 |
| BmuI | ACTGGG | 1 cut(s) | 302 |
| BpmI | CTGGAG | 1 cut(s) | 509 |
| Bpu10I | CCTNAGC | 2 cut(s) | 511, 580 |
| BsaAI | YACGTR | 1 cut(s) | 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 211 |
| BsaJI | CCNNGG | 4 cut(s) | 158, 365, 683, 783 |
| BsaWI | WCCGGW | 1 cut(s) | 262 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 253 |
| Bse118I | RCCGGY | 1 cut(s) | 712 |
| Bse1I | ACTGG | 1 cut(s) | 297 |
| Bse8I | GATNNNNATC | 1 cut(s) | 211 |
| BseAI | TCCGGA | 1 cut(s) | 262 |
| BseBI | CCWGG | 2 cut(s) | 530, 785 |
| BseDI | CCNNGG | 4 cut(s) | 158, 365, 683, 783 |
| BseGI | GGATG | 2 cut(s) | 365, 815 |
| BseJI | GATNNNNATC | 1 cut(s) | 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BseMII | CTCAG | 3 cut(s) | 525, 584, 729 |
| BseNI | ACTGG | 1 cut(s) | 297 |
| BseRI | GAGGAG | 6 cut(s) | 83, 319, 506, 615, 764, 860 |
| BseSI | GKGCMC | 1 cut(s) | 683 |
| BseXI | GCAGC | 3 cut(s) | 563, 704, 744 |
| BseYI | CCCAGC | 1 cut(s) | 695 |
| BsgI | GTGCAG | 1 cut(s) | 711 |
| BshFI | GGCC | 3 cut(s) | 471, 528, 716 |
| BsiHKAI | GWGCWC | 2 cut(s) | 512, 870 |
| BsiSI | CCGG | 2 cut(s) | 263, 713 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BsmAI | GTCTC | 3 cut(s) | 104, 488, 589 |
| BsmBI | CGTCTC | 1 cut(s) | 104 |
| BsnI | GGCC | 3 cut(s) | 471, 528, 716 |
| Bsp1286I | GDGCHC | 3 cut(s) | 512, 683, 870 |
| Bsp13I | TCCGGA | 1 cut(s) | 262 |
| Bsp143I | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| Bsp19I | CCATGG | 1 cut(s) | 365 |
| BspACI | CCGC | 4 cut(s) | 107, 163, 350, 801 |
| BspANI | GGCC | 3 cut(s) | 471, 528, 716 |
| BspCNI | CTCAG | 3 cut(s) | 524, 585, 730 |
| BspEI | TCCGGA | 1 cut(s) | 262 |
| BspLI | GGNNCC | 3 cut(s) | 245, 258, 624 |
| BspPI | GGATC | 5 cut(s) | 238, 251, 273, 413, 802 |
| BspQI | GCTCTTC | 1 cut(s) | 147 |
| BsrFI | RCCGGY | 1 cut(s) | 712 |
| BsrI | ACTGG | 1 cut(s) | 297 |
| BssAI | RCCGGY | 1 cut(s) | 712 |
| BssECI | CCNNGG | 4 cut(s) | 158, 365, 683, 783 |
| BssMI | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| BssT1I | CCWWGG | 2 cut(s) | 365, 683 |
| Bst2UI | CCWGG | 2 cut(s) | 530, 785 |
| Bst4CI | ACNGT | 1 cut(s) | 768 |
| Bst6I | CTCTTC | 1 cut(s) | 147 |
| BstBAI | YACGTR | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 5 cut(s) | 511, 580, 593, 599, 738 |
| BstDSI | CCRYGG | 2 cut(s) | 158, 365 |
| BstF5I | GGATG | 2 cut(s) | 365, 815 |
| BstKTI | GATC | 6 cut(s) | 246, 268, 340, 421, 633, 797 |
| BstMAI | GTCTC | 3 cut(s) | 104, 488, 589 |
| BstMBI | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 722 |
| BstNI | CCWGG | 2 cut(s) | 530, 785 |
| BstSCI | CCNGG | 2 cut(s) | 528, 783 |
| BstSLI | GKGCMC | 1 cut(s) | 683 |
| BstV1I | GCAGC | 3 cut(s) | 563, 704, 744 |
| BstX2I | RGATCY | 3 cut(s) | 243, 418, 794 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 165, 536 |
| BstYI | RGATCY | 3 cut(s) | 243, 418, 794 |
| BsuRI | GGCC | 3 cut(s) | 471, 528, 716 |
| BtgI | CCRYGG | 2 cut(s) | 158, 365 |
| BtsCI | GGATG | 2 cut(s) | 365, 815 |
| BtsI | GCAGTG | 1 cut(s) | 399 |
| BtsIMutI | CAGTG | 2 cut(s) | 399, 402 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| CaiI | CAGNNNCTG | 2 cut(s) | 398, 772 |
| Cfr10I | RCCGGY | 1 cut(s) | 712 |
| Cfr13I | GGNCC | 1 cut(s) | 369 |
| CseI | GACGC | 1 cut(s) | 849 |
| Csp6I | GTAC | 2 cut(s) | 41, 225 |
| CviAII | CATG | 2 cut(s) | 366, 424 |
| CviQI | GTAC | 2 cut(s) | 41, 225 |
| DdeI | CTNAG | 5 cut(s) | 511, 580, 593, 599, 738 |
| DpnI | GATC | 6 cut(s) | 245, 267, 339, 420, 632, 796 |
| DpnII | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| EaeI | YGGCCR | 1 cut(s) | 526 |
| Eam1104I | CTCTTC | 1 cut(s) | 147 |
| EarI | CTCTTC | 1 cut(s) | 147 |
| Ecl136II | GAGCTC | 2 cut(s) | 510, 868 |
| Eco130I | CCWWGG | 2 cut(s) | 365, 683 |
| Eco147I | AGGCCT | 1 cut(s) | 471 |
| Eco24I | GRGCYC | 2 cut(s) | 512, 870 |
| Eco47I | GGWCC | 1 cut(s) | 369 |
| Eco53kI | GAGCTC | 2 cut(s) | 510, 868 |
| EcoICRI | GAGCTC | 2 cut(s) | 510, 868 |
| EcoRI | GAATTC | 1 cut(s) | 778 |
| EcoRII | CCWGG | 2 cut(s) | 528, 783 |
| EcoT14I | CCWWGG | 2 cut(s) | 365, 683 |
| EcoT38I | GRGCYC | 2 cut(s) | 512, 870 |
| ErhI | CCWWGG | 2 cut(s) | 365, 683 |
| Esp3I | CGTCTC | 1 cut(s) | 104 |
| FaeI | CATG | 2 cut(s) | 369, 427 |
| FaiI | YATR | 6 cut(s) | 51, 194, 367, 425, 720, 854 |
| FatI | CATG | 2 cut(s) | 365, 423 |
| FbaI | TGATCA | 1 cut(s) | 630 |
| Fnu4HI | GCNGC | 3 cut(s) | 577, 693, 758 |
| FokI | GGATG | 2 cut(s) | 372, 822 |
| FriOI | GRGCYC | 2 cut(s) | 512, 870 |
| Fsp4HI | GCNGC | 3 cut(s) | 577, 693, 758 |
| FspBI | CTAG | 3 cut(s) | 684, 761, 874 |
| GluI | GCNGC | 3 cut(s) | 577, 693, 758 |
| GsaI | CCCAGC | 1 cut(s) | 699 |
| GsuI | CTGGAG | 1 cut(s) | 509 |
| HaeIII | GGCC | 3 cut(s) | 471, 528, 716 |
| HapII | CCGG | 2 cut(s) | 263, 713 |
| HgaI | GACGC | 1 cut(s) | 849 |
| Hin1II | CATG | 2 cut(s) | 369, 427 |
| HincII | GTYRAC | 1 cut(s) | 290 |
| HindII | GTYRAC | 1 cut(s) | 290 |
| HindIII | AAGCTT | 1 cut(s) | 95 |
| HinfI | GANTC | 4 cut(s) | 196, 212, 310, 457 |
| HpaII | CCGG | 2 cut(s) | 263, 713 |
| Hpy166II | GTNNAC | 4 cut(s) | 41, 182, 290, 613 |
| Hpy188I | TCNGA | 7 cut(s) | 139, 256, 270, 480, 594, 630, 865 |
| Hpy188III | TCNNGA | 3 cut(s) | 263, 454, 488 |
| Hpy8I | GTNNAC | 4 cut(s) | 41, 182, 290, 613 |
| Hpy99I | CGWCG | 2 cut(s) | 620, 865 |
| HpyAV | CCTTC | 2 cut(s) | 382, 663 |
| HpyCH4III | ACNGT | 1 cut(s) | 768 |
| HpyCH4IV | ACGT | 2 cut(s) | 499, 615 |
| HpyCH4V | TGCA | 7 cut(s) | 89, 101, 392, 692, 725, 790, 813 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 722 |
| HpyF3I | CTNAG | 5 cut(s) | 511, 580, 593, 599, 738 |
| HpySE526I | ACGT | 2 cut(s) | 499, 615 |
| Hsp92II | CATG | 2 cut(s) | 369, 427 |
| Kpn2I | TCCGGA | 1 cut(s) | 262 |
| Ksp22I | TGATCA | 1 cut(s) | 630 |
| Kzo9I | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| LguI | GCTCTTC | 1 cut(s) | 147 |
| LmnI | GCTCC | 5 cut(s) | 256, 628, 700, 865, 873 |
| Lsp1109I | GCAGC | 3 cut(s) | 563, 704, 744 |
| LweI | GCATC | 3 cut(s) | 350, 712, 800 |
| MaeI | CTAG | 3 cut(s) | 684, 761, 874 |
| MaeII | ACGT | 2 cut(s) | 499, 615 |
| MaeIII | GTNAC | 2 cut(s) | 400, 825 |
| MalI | GATC | 6 cut(s) | 245, 267, 339, 420, 632, 796 |
| MboI | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| MboII | GAAGA | 4 cut(s) | 164, 244, 428, 754 |
| MflI | RGATCY | 3 cut(s) | 243, 418, 794 |
| MhlI | GDGCHC | 3 cut(s) | 512, 683, 870 |
| MlsI | TGGCCA | 1 cut(s) | 528 |
| MluCI | AATT | 1 cut(s) | 778 |
| MluNI | TGGCCA | 1 cut(s) | 528 |
| MmeI | TCCRAC | 2 cut(s) | 58, 843 |
| Mox20I | TGGCCA | 1 cut(s) | 528 |
| MroI | TCCGGA | 1 cut(s) | 262 |
| MroXI | GAANNNNTTC | 1 cut(s) | 768 |
| MscI | TGGCCA | 1 cut(s) | 528 |
| MseI | TTAA | 2 cut(s) | 354, 558 |
| MslI | CAYNNNNRTG | 1 cut(s) | 163 |
| Msp20I | TGGCCA | 1 cut(s) | 528 |
| MspA1I | CMGCKG | 2 cut(s) | 576, 695 |
| MspI | CCGG | 2 cut(s) | 263, 713 |
| MspR9I | CCNGG | 2 cut(s) | 530, 785 |
| MvaI | CCWGG | 2 cut(s) | 530, 785 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 722 |
| NcoI | CCATGG | 1 cut(s) | 365 |
| NdeII | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| NlaIII | CATG | 2 cut(s) | 369, 427 |
| NlaIV | GGNNCC | 3 cut(s) | 245, 258, 624 |
| NmuCI | GTSAC | 1 cut(s) | 400 |
| OliI | CACNNNNGTG | 1 cut(s) | 163 |
| PceI | AGGCCT | 1 cut(s) | 471 |
| PciSI | GCTCTTC | 1 cut(s) | 147 |
| PdmI | GAANNNNTTC | 1 cut(s) | 768 |
| PfeI | GAWTC | 4 cut(s) | 196, 212, 310, 457 |
| PflFI | GACNNNGTC | 1 cut(s) | 859 |
| PkrI | GCNGC | 3 cut(s) | 578, 694, 759 |
| Ppu21I | YACGTR | 1 cut(s) | 500 |
| Psp124BI | GAGCTC | 2 cut(s) | 512, 870 |
| Psp6I | CCWGG | 2 cut(s) | 528, 783 |
| PspFI | CCCAGC | 1 cut(s) | 695 |
| PspGI | CCWGG | 2 cut(s) | 528, 783 |
| PspN4I | GGNNCC | 3 cut(s) | 245, 258, 624 |
| PspPI | GGNCC | 1 cut(s) | 369 |
| PstNI | CAGNNNCTG | 2 cut(s) | 398, 772 |
| PsuI | RGATCY | 3 cut(s) | 243, 418, 794 |
| PsyI | GACNNNGTC | 1 cut(s) | 859 |
| PvuII | CAGCTG | 2 cut(s) | 576, 695 |
| RsaI | GTAC | 2 cut(s) | 42, 226 |
| RsaNI | GTAC | 2 cut(s) | 41, 225 |
| RseI | CAYNNNNRTG | 1 cut(s) | 163 |
| SacI | GAGCTC | 2 cut(s) | 512, 870 |
| SapI | GCTCTTC | 1 cut(s) | 147 |
| SaqAI | TTAA | 2 cut(s) | 354, 558 |
| SatI | GCNGC | 3 cut(s) | 577, 693, 758 |
| Sau3AI | GATC | 6 cut(s) | 243, 265, 337, 418, 630, 794 |
| Sau96I | GGNCC | 1 cut(s) | 369 |
| ScrFI | CCNGG | 2 cut(s) | 530, 785 |
| SduI | GDGCHC | 3 cut(s) | 512, 683, 870 |
| SfaNI | GCATC | 3 cut(s) | 350, 712, 800 |
| SinI | GGWCC | 1 cut(s) | 369 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 163 |
| Sse9I | AATT | 1 cut(s) | 778 |
| SseBI | AGGCCT | 1 cut(s) | 471 |
| SsiI | CCGC | 4 cut(s) | 107, 163, 350, 801 |
| SspI | AATATT | 1 cut(s) | 449 |
| SspMI | CTAG | 3 cut(s) | 684, 761, 874 |
| SstI | GAGCTC | 2 cut(s) | 512, 870 |
| StuI | AGGCCT | 1 cut(s) | 471 |
| StyD4I | CCNGG | 2 cut(s) | 528, 783 |
| StyI | CCWWGG | 2 cut(s) | 365, 683 |
| TaaI | ACNGT | 1 cut(s) | 768 |
| TaiI | ACGT | 2 cut(s) | 502, 618 |
| TaqI | TCGA | 3 cut(s) | 205, 375, 618 |
| TasI | AATT | 1 cut(s) | 778 |
| TatI | WGTACW | 1 cut(s) | 40 |
| TfiI | GAWTC | 4 cut(s) | 196, 212, 310, 457 |
| Tru1I | TTAA | 2 cut(s) | 354, 558 |
| Tru9I | TTAA | 2 cut(s) | 354, 558 |
| TscAI | CASTG | 2 cut(s) | 399, 409 |
| TseFI | GTSAC | 1 cut(s) | 400 |
| TseI | GCWGC | 3 cut(s) | 576, 692, 757 |
| Tsp45I | GTSAC | 1 cut(s) | 400 |
| TspDTI | ATGAA | 2 cut(s) | 209, 245 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 2 cut(s) | 399, 409 |
| Tth111I | GACNNNGTC | 1 cut(s) | 859 |
| VpaK11BI | GGWCC | 1 cut(s) | 369 |
| XapI | RAATTY | 1 cut(s) | 778 |
| XmaJI | CCTAGG | 1 cut(s) | 683 |
| XmnI | GAANNNNTTC | 1 cut(s) | 768 |
| XspI | CTAG | 3 cut(s) | 684, 761, 874 |