Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 9 - 59 | 7.2e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 145 |
| AccI | GTMKAC | 2 cut(s) | 397, 461 |
| AccII | CGCG | 1 cut(s) | 173 |
| AciI | CCGC | 2 cut(s) | 299, 494 |
| AclWI | GGATC | 1 cut(s) | 310 |
| AcyI | GRCGYC | 1 cut(s) | 142 |
| AfaI | GTAC | 1 cut(s) | 498 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 265, 392 |
| AgsI | TTSAA | 1 cut(s) | 312 |
| AleI | CACNNNNGTG | 1 cut(s) | 22 |
| AluBI | AGCT | 1 cut(s) | 412 |
| AluI | AGCT | 1 cut(s) | 412 |
| AlwI | GGATC | 1 cut(s) | 310 |
| AoxI | GGCC | 3 cut(s) | 383, 431, 470 |
| AspLEI | GCGC | 1 cut(s) | 343 |
| AspS9I | GGNCC | 3 cut(s) | 374, 383, 431 |
| AsuHPI | GGTGA | 1 cut(s) | 295 |
| AvaII | GGWCC | 1 cut(s) | 374 |
| BauI | CACGAG | 1 cut(s) | 54 |
| BccI | CCATC | 1 cut(s) | 182 |
| BclI | TGATCA | 2 cut(s) | 85, 118 |
| BfoI | RGCGCY | 1 cut(s) | 344 |
| Bme18I | GGWCC | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 3 cut(s) | 374, 383, 431 |
| BmiI | GGNNCC | 1 cut(s) | 375 |
| Bsa29I | ATCGAT | 1 cut(s) | 305 |
| BsaBI | GATNNNNATC | 2 cut(s) | 84, 123 |
| BsaHI | GRCGYC | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 1 cut(s) | 146 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 265, 392 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| Bse8I | GATNNNNATC | 2 cut(s) | 84, 123 |
| BseCI | ATCGAT | 1 cut(s) | 305 |
| BseDI | CCNNGG | 1 cut(s) | 146 |
| BseGI | GGATG | 1 cut(s) | 193 |
| BseJI | GATNNNNATC | 2 cut(s) | 84, 123 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 265, 392 |
| BseMII | CTCAG | 3 cut(s) | 20, 381, 399 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| Bsh1236I | CGCG | 1 cut(s) | 173 |
| BshFI | GGCC | 3 cut(s) | 385, 433, 472 |
| BshVI | ATCGAT | 1 cut(s) | 305 |
| BslFI | GGGAC | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 265, 392 |
| BsmFI | GGGAC | 1 cut(s) | 238 |
| BsnI | GGCC | 3 cut(s) | 385, 433, 472 |
| Bsp143I | GATC | 4 cut(s) | 85, 118, 174, 302 |
| Bsp68I | TCGCGA | 1 cut(s) | 173 |
| BspACI | CCGC | 2 cut(s) | 299, 494 |
| BspANI | GGCC | 3 cut(s) | 385, 433, 472 |
| BspCNI | CTCAG | 3 cut(s) | 21, 382, 400 |
| BspDI | ATCGAT | 1 cut(s) | 305 |
| BspFNI | CGCG | 1 cut(s) | 173 |
| BspLI | GGNNCC | 1 cut(s) | 375 |
| BspPI | GGATC | 1 cut(s) | 310 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| BssECI | CCNNGG | 1 cut(s) | 146 |
| BssMI | GATC | 4 cut(s) | 85, 118, 174, 302 |
| BssNI | GRCGYC | 1 cut(s) | 142 |
| BssSI | CACGAG | 1 cut(s) | 54 |
| Bst2BI | CACGAG | 1 cut(s) | 54 |
| Bst4CI | ACNGT | 3 cut(s) | 64, 440, 466 |
| Bst6I | CTCTTC | 1 cut(s) | 173 |
| BstACI | GRCGYC | 1 cut(s) | 142 |
| BstDEI | CTNAG | 3 cut(s) | 29, 390, 408 |
| BstDSI | CCRYGG | 1 cut(s) | 146 |
| BstF5I | GGATG | 1 cut(s) | 193 |
| BstFNI | CGCG | 1 cut(s) | 173 |
| BstH2I | RGCGCY | 1 cut(s) | 344 |
| BstHHI | GCGC | 1 cut(s) | 343 |
| BstKTI | GATC | 4 cut(s) | 88, 121, 177, 305 |
| BstMBI | GATC | 4 cut(s) | 85, 118, 174, 302 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 170, 179, 478 |
| BstUI | CGCG | 1 cut(s) | 173 |
| Bsu15I | ATCGAT | 1 cut(s) | 305 |
| BsuRI | GGCC | 3 cut(s) | 385, 433, 472 |
| BsuTUI | ATCGAT | 1 cut(s) | 305 |
| BtgI | CCRYGG | 1 cut(s) | 146 |
| BtsCI | GGATG | 1 cut(s) | 193 |
| BtsIMutI | CAGTG | 2 cut(s) | 405, 445 |
| BtuMI | TCGCGA | 1 cut(s) | 173 |
| CfoI | GCGC | 1 cut(s) | 343 |
| Cfr13I | GGNCC | 3 cut(s) | 374, 383, 431 |
| ClaI | ATCGAT | 1 cut(s) | 305 |
| Csp6I | GTAC | 1 cut(s) | 497 |
| CviAII | CATG | 2 cut(s) | 110, 246 |
| CviJI | RGCY | 7 cut(s) | 52, 71, 164, 385, 412, 433, 472 |
| CviKI_1 | RGCY | 7 cut(s) | 52, 71, 164, 385, 412, 433, 472 |
| CviQI | GTAC | 1 cut(s) | 497 |
| DdeI | CTNAG | 3 cut(s) | 29, 390, 408 |
| DpnI | GATC | 4 cut(s) | 87, 120, 176, 304 |
| DpnII | GATC | 4 cut(s) | 85, 118, 174, 302 |
| Eam1104I | CTCTTC | 1 cut(s) | 173 |
| EarI | CTCTTC | 1 cut(s) | 173 |
| Eco147I | AGGCCT | 1 cut(s) | 472 |
| Eco47I | GGWCC | 1 cut(s) | 374 |
| FaeI | CATG | 2 cut(s) | 113, 249 |
| FaiI | YATR | 8 cut(s) | 11, 22, 90, 111, 117, 123, 247, 266 |
| FaqI | GGGAC | 1 cut(s) | 238 |
| FatI | CATG | 2 cut(s) | 109, 245 |
| FauI | CCCGC | 1 cut(s) | 292 |
| FbaI | TGATCA | 2 cut(s) | 85, 118 |
| FblI | GTMKAC | 2 cut(s) | 397, 461 |
| FokI | GGATG | 1 cut(s) | 200 |
| GlaI | GCGC | 1 cut(s) | 342 |
| HaeII | RGCGCY | 1 cut(s) | 344 |
| HaeIII | GGCC | 3 cut(s) | 385, 433, 472 |
| HhaI | GCGC | 1 cut(s) | 343 |
| Hin1I | GRCGYC | 1 cut(s) | 142 |
| Hin1II | CATG | 2 cut(s) | 113, 249 |
| Hin6I | GCGC | 1 cut(s) | 341 |
| HinP1I | GCGC | 1 cut(s) | 341 |
| HincII | GTYRAC | 1 cut(s) | 357 |
| HindII | GTYRAC | 1 cut(s) | 357 |
| HinfI | GANTC | 1 cut(s) | 358 |
| HphI | GGTGA | 1 cut(s) | 295 |
| Hpy166II | GTNNAC | 4 cut(s) | 357, 377, 398, 462 |
| Hpy188I | TCNGA | 1 cut(s) | 30 |
| Hpy188III | TCNNGA | 2 cut(s) | 172, 235 |
| Hpy8I | GTNNAC | 4 cut(s) | 357, 377, 398, 462 |
| Hpy99I | CGWCG | 1 cut(s) | 187 |
| HpyAV | CCTTC | 2 cut(s) | 7, 186 |
| HpyCH4III | ACNGT | 3 cut(s) | 64, 440, 466 |
| HpyCH4IV | ACGT | 1 cut(s) | 142 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 170, 179, 478 |
| HpyF3I | CTNAG | 3 cut(s) | 29, 390, 408 |
| HpySE526I | ACGT | 1 cut(s) | 142 |
| Hsp92I | GRCGYC | 1 cut(s) | 142 |
| Hsp92II | CATG | 2 cut(s) | 113, 249 |
| HspAI | GCGC | 1 cut(s) | 341 |
| Ksp22I | TGATCA | 2 cut(s) | 85, 118 |
| Kzo9I | GATC | 4 cut(s) | 85, 118, 174, 302 |
| LpnPI | CCDG | 7 cut(s) | 220, 274, 321, 386, 398, 414, 486 |
| MaeII | ACGT | 1 cut(s) | 142 |
| MaeIII | GTNAC | 1 cut(s) | 58 |
| MalI | GATC | 4 cut(s) | 87, 120, 176, 304 |
| MboI | GATC | 4 cut(s) | 85, 118, 174, 302 |
| MboII | GAAGA | 3 cut(s) | 160, 209, 499 |
| MfeI | CAATTG | 2 cut(s) | 220, 227 |
| MluCI | AATT | 3 cut(s) | 220, 227, 450 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MseI | TTAA | 5 cut(s) | 206, 345, 363, 477, 505 |
| MslI | CAYNNNNRTG | 2 cut(s) | 22, 114 |
| MunI | CAATTG | 2 cut(s) | 220, 227 |
| MvnI | CGCG | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 170, 179, 478 |
| NdeII | GATC | 4 cut(s) | 85, 118, 174, 302 |
| NlaIII | CATG | 2 cut(s) | 113, 249 |
| NlaIV | GGNNCC | 1 cut(s) | 375 |
| NmeAIII | GCCGAG | 1 cut(s) | 158 |
| NmuCI | GTSAC | 1 cut(s) | 58 |
| NruI | TCGCGA | 1 cut(s) | 173 |
| OliI | CACNNNNGTG | 1 cut(s) | 22 |
| PceI | AGGCCT | 1 cut(s) | 472 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 1 cut(s) | 375 |
| PspPI | GGNCC | 3 cut(s) | 374, 383, 431 |
| RruI | TCGCGA | 1 cut(s) | 173 |
| RsaI | GTAC | 1 cut(s) | 498 |
| RsaNI | GTAC | 1 cut(s) | 497 |
| RseI | CAYNNNNRTG | 2 cut(s) | 22, 114 |
| SaqAI | TTAA | 5 cut(s) | 206, 345, 363, 477, 505 |
| Sau3AI | GATC | 4 cut(s) | 85, 118, 174, 302 |
| Sau96I | GGNCC | 3 cut(s) | 374, 383, 431 |
| SchI | GAGTC | 1 cut(s) | 352 |
| SetI | ASST | 7 cut(s) | 145, 213, 285, 294, 414, 426, 505 |
| SinI | GGWCC | 1 cut(s) | 374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 22, 114 |
| Sse9I | AATT | 3 cut(s) | 220, 227, 450 |
| SseBI | AGGCCT | 1 cut(s) | 472 |
| SsiI | CCGC | 2 cut(s) | 299, 494 |
| StuI | AGGCCT | 1 cut(s) | 472 |
| TaaI | ACNGT | 3 cut(s) | 64, 440, 466 |
| TaiI | ACGT | 1 cut(s) | 145 |
| TaqI | TCGA | 1 cut(s) | 305 |
| TasI | AATT | 3 cut(s) | 220, 227, 450 |
| Tru1I | TTAA | 5 cut(s) | 206, 345, 363, 477, 505 |
| Tru9I | TTAA | 5 cut(s) | 206, 345, 363, 477, 505 |
| TscAI | CASTG | 2 cut(s) | 412, 445 |
| TseFI | GTSAC | 1 cut(s) | 58 |
| Tsp45I | GTSAC | 1 cut(s) | 58 |
| TspDTI | ATGAA | 2 cut(s) | 26, 126 |
| TspGWI | ACGGA | 3 cut(s) | 135, 200, 345 |
| TspRI | CASTG | 2 cut(s) | 412, 445 |
| VpaK11BI | GGWCC | 1 cut(s) | 374 |
| XmiI | GTMKAC | 2 cut(s) | 397, 461 |
| ZraI | GACGTC | 1 cut(s) | 143 |