ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 69 - 97 | 2.1e-09 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 181 |
| Acc36I | ACCTGC | 1 cut(s) | 181 |
| Acc65I | GGTACC | 1 cut(s) | 133 |
| AccB1I | GGYRCC | 1 cut(s) | 133 |
| AclWI | GGATC | 1 cut(s) | 333 |
| AcsI | RAATTY | 1 cut(s) | 151 |
| AfaI | GTAC | 1 cut(s) | 135 |
| AluBI | AGCT | 1 cut(s) | 298 |
| AluI | AGCT | 1 cut(s) | 298 |
| AlwI | GGATC | 1 cut(s) | 333 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 86 |
| ApoI | RAATTY | 1 cut(s) | 151 |
| Asp718I | GGTACC | 1 cut(s) | 133 |
| AsuII | TTCGAA | 1 cut(s) | 307 |
| BanI | GGYRCC | 1 cut(s) | 133 |
| BbvCI | CCTCAGC | 1 cut(s) | 165 |
| BfaI | CTAG | 3 cut(s) | 279, 299, 334 |
| BfuAI | ACCTGC | 1 cut(s) | 181 |
| BmiI | GGNNCC | 2 cut(s) | 24, 135 |
| BmsI | GCATC | 1 cut(s) | 280 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| Bpu14I | TTCGAA | 1 cut(s) | 307 |
| BpuEI | CTTGAG | 2 cut(s) | 76, 218 |
| BsaJI | CCNNGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 1 cut(s) | 26 |
| BseMII | CTCAG | 3 cut(s) | 56, 156, 231 |
| BseRI | GAGGAG | 1 cut(s) | 335 |
| BshNI | GGYRCC | 1 cut(s) | 133 |
| Bsp119I | TTCGAA | 1 cut(s) | 307 |
| Bsp143I | GATC | 1 cut(s) | 325 |
| Bsp19I | CCATGG | 1 cut(s) | 26 |
| BspCNI | CTCAG | 3 cut(s) | 57, 157, 232 |
| BspLI | GGNNCC | 2 cut(s) | 24, 135 |
| BspMI | ACCTGC | 1 cut(s) | 181 |
| BspPI | GGATC | 1 cut(s) | 333 |
| BspT104I | TTCGAA | 1 cut(s) | 307 |
| BspT107I | GGYRCC | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 26 |
| BssMI | GATC | 1 cut(s) | 325 |
| BssT1I | CCWWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 138 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstBI | TTCGAA | 1 cut(s) | 307 |
| BstDEI | CTNAG | 3 cut(s) | 65, 165, 240 |
| BstDSI | CCRYGG | 1 cut(s) | 26 |
| BstKTI | GATC | 1 cut(s) | 328 |
| BstMBI | GATC | 1 cut(s) | 325 |
| BtgI | CCRYGG | 1 cut(s) | 26 |
| BveI | ACCTGC | 1 cut(s) | 181 |
| CaiI | CAGNNNCTG | 1 cut(s) | 86 |
| Csp6I | GTAC | 1 cut(s) | 134 |
| CviAII | CATG | 2 cut(s) | 27, 128 |
| CviJI | RGCY | 4 cut(s) | 25, 164, 283, 298 |
| CviKI_1 | RGCY | 4 cut(s) | 25, 164, 283, 298 |
| CviQI | GTAC | 1 cut(s) | 134 |
| DdeI | CTNAG | 3 cut(s) | 65, 165, 240 |
| DpnI | GATC | 1 cut(s) | 327 |
| DpnII | GATC | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| Eco130I | CCWWGG | 1 cut(s) | 26 |
| EcoT14I | CCWWGG | 1 cut(s) | 26 |
| ErhI | CCWWGG | 1 cut(s) | 26 |
| FaeI | CATG | 2 cut(s) | 30, 131 |
| FaiI | YATR | 7 cut(s) | 28, 98, 129, 142, 179, 209, 228 |
| FatI | CATG | 2 cut(s) | 26, 127 |
| FspBI | CTAG | 3 cut(s) | 279, 299, 334 |
| Hin1II | CATG | 2 cut(s) | 30, 131 |
| HinfI | GANTC | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 1 cut(s) | 217 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 66, 157 |
| Hpy188III | TCNNGA | 2 cut(s) | 55, 251 |
| Hpy8I | GTNNAC | 1 cut(s) | 217 |
| HpyAV | CCTTC | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 1 cut(s) | 138 |
| HpyCH4IV | ACGT | 1 cut(s) | 107 |
| HpyCH4V | TGCA | 2 cut(s) | 121, 127 |
| HpyF3I | CTNAG | 3 cut(s) | 65, 165, 240 |
| HpySE526I | ACGT | 1 cut(s) | 107 |
| Hsp92II | CATG | 2 cut(s) | 30, 131 |
| KpnI | GGTACC | 1 cut(s) | 137 |
| Kzo9I | GATC | 1 cut(s) | 325 |
| LmnI | GCTCC | 1 cut(s) | 22 |
| LpnPI | CCDG | 2 cut(s) | 176, 252 |
| LweI | GCATC | 1 cut(s) | 280 |
| MaeI | CTAG | 3 cut(s) | 279, 299, 334 |
| MaeII | ACGT | 1 cut(s) | 107 |
| MaeIII | GTNAC | 2 cut(s) | 82, 287 |
| MalI | GATC | 1 cut(s) | 327 |
| MboI | GATC | 1 cut(s) | 325 |
| MboII | GAAGA | 1 cut(s) | 83 |
| MluCI | AATT | 2 cut(s) | 151, 264 |
| MnlI | CCTC | 8 cut(s) | 12, 60, 151, 160, 175, 205, 313, 316 |
| MslI | CAYNNNNRTG | 1 cut(s) | 176 |
| NcoI | CCATGG | 1 cut(s) | 26 |
| NdeII | GATC | 1 cut(s) | 325 |
| NlaIII | CATG | 2 cut(s) | 30, 131 |
| NlaIV | GGNNCC | 2 cut(s) | 24, 135 |
| NmuCI | GTSAC | 1 cut(s) | 287 |
| NspV | TTCGAA | 1 cut(s) | 307 |
| PaqCI | CACCTGC | 1 cut(s) | 181 |
| PfeI | GAWTC | 1 cut(s) | 304 |
| PspN4I | GGNNCC | 2 cut(s) | 24, 135 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 75, 107 |
| PstNI | CAGNNNCTG | 1 cut(s) | 86 |
| RsaI | GTAC | 1 cut(s) | 135 |
| RsaNI | GTAC | 1 cut(s) | 134 |
| RseI | CAYNNNNRTG | 1 cut(s) | 176 |
| Sau3AI | GATC | 1 cut(s) | 325 |
| SetI | ASST | 8 cut(s) | 110, 162, 186, 195, 216, 227, 241, 300 |
| SfaNI | GCATC | 1 cut(s) | 280 |
| SfuI | TTCGAA | 1 cut(s) | 307 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 176 |
| SmlI | CTYRAG | 2 cut(s) | 55, 197 |
| SmoI | CTYRAG | 2 cut(s) | 55, 197 |
| Sse9I | AATT | 2 cut(s) | 151, 264 |
| SspMI | CTAG | 3 cut(s) | 279, 299, 334 |
| StyI | CCWWGG | 1 cut(s) | 26 |
| TaaI | ACNGT | 1 cut(s) | 138 |
| TaiI | ACGT | 1 cut(s) | 110 |
| TaqI | TCGA | 2 cut(s) | 148, 307 |
| TasI | AATT | 2 cut(s) | 151, 264 |
| TfiI | GAWTC | 1 cut(s) | 304 |
| TseFI | GTSAC | 1 cut(s) | 287 |
| Tsp45I | GTSAC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 1 cut(s) | 243 |
| XapI | RAATTY | 1 cut(s) | 151 |
| XspI | CTAG | 3 cut(s) | 279, 299, 334 |