ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 74 - 121 | 1.4e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 393 |
| Acc36I | ACCTGC | 1 cut(s) | 393 |
| AccII | CGCG | 1 cut(s) | 224 |
| AciI | CCGC | 2 cut(s) | 224, 311 |
| AclWI | GGATC | 2 cut(s) | 254, 267 |
| AcoI | YGGCCR | 1 cut(s) | 700 |
| AcsI | RAATTY | 1 cut(s) | 515 |
| AcuI | CTGAAG | 2 cut(s) | 778, 1064 |
| AfaI | GTAC | 2 cut(s) | 537, 768 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 23, 943, 1008, 1086, 1113 |
| AflII | CTTAAG | 1 cut(s) | 872 |
| AgsI | TTSAA | 4 cut(s) | 165, 296, 520, 578 |
| AjnI | CCWGG | 2 cut(s) | 654, 702 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 628, 660 |
| AluBI | AGCT | 3 cut(s) | 192, 509, 786 |
| AluI | AGCT | 3 cut(s) | 192, 509, 786 |
| Alw21I | GWGCWC | 1 cut(s) | 1023 |
| Alw26I | GTCTC | 4 cut(s) | 326, 710, 908, 923 |
| AlwI | GGATC | 2 cut(s) | 254, 267 |
| Ama87I | CYCGRG | 2 cut(s) | 37, 1113 |
| AoxI | GGCC | 3 cut(s) | 700, 934, 1116 |
| ApaI | GGGCCC | 1 cut(s) | 1120 |
| ApeKI | GCWGC | 2 cut(s) | 189, 1056 |
| ApoI | RAATTY | 1 cut(s) | 515 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 730, 762 |
| AspLEI | GCGC | 1 cut(s) | 1061 |
| AspS9I | GGNCC | 5 cut(s) | 465, 935, 1103, 1116, 1117 |
| AsuC2I | CCSGG | 2 cut(s) | 38, 39 |
| AsuHPI | GGTGA | 2 cut(s) | 91, 471 |
| AvaI | CYCGRG | 2 cut(s) | 37, 1113 |
| AvaII | GGWCC | 2 cut(s) | 465, 1103 |
| BaeGI | GKGCMC | 2 cut(s) | 866, 1120 |
| BalI | TGGCCA | 1 cut(s) | 702 |
| BamHI | GGATCC | 1 cut(s) | 259 |
| BanII | GRGCYC | 1 cut(s) | 1120 |
| Bbv12I | GWGCWC | 1 cut(s) | 1023 |
| BbvI | GCAGC | 2 cut(s) | 201, 1068 |
| BccI | CCATC | 6 cut(s) | 17, 22, 173, 634, 692, 919 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 424, 458 |
| BciT130I | CCWGG | 2 cut(s) | 656, 704 |
| BcnI | CCSGG | 2 cut(s) | 38, 39 |
| BcoDI | GTCTC | 4 cut(s) | 326, 710, 908, 923 |
| BfaI | CTAG | 3 cut(s) | 483, 683, 1074 |
| BfrI | CTTAAG | 1 cut(s) | 872 |
| BfuAI | ACCTGC | 1 cut(s) | 393 |
| BisI | GCNGC | 2 cut(s) | 190, 1057 |
| BlsI | GCNGC | 2 cut(s) | 191, 1058 |
| Bme1390I | CCNGG | 4 cut(s) | 38, 39, 656, 704 |
| Bme18I | GGWCC | 2 cut(s) | 465, 1103 |
| BmeT110I | CYCGRG | 2 cut(s) | 37, 1113 |
| BmgT120I | GGNCC | 5 cut(s) | 465, 935, 1103, 1116, 1117 |
| BmiI | GGNNCC | 6 cut(s) | 15, 228, 261, 1104, 1105, 1118 |
| BmrFI | CCNGG | 4 cut(s) | 38, 39, 656, 704 |
| BmrI | ACTGGG | 1 cut(s) | 930 |
| BmsI | GCATC | 1 cut(s) | 823 |
| BmuI | ACTGGG | 1 cut(s) | 930 |
| BpmI | CTGGAG | 1 cut(s) | 495 |
| BpuMI | CCSGG | 2 cut(s) | 38, 39 |
| BsaAI | YACGTR | 1 cut(s) | 368 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 38, 263 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 365, 395 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 23, 943, 1008, 1086, 1113 |
| Bse1I | ACTGG | 3 cut(s) | 770, 925, 937 |
| Bse3DI | GCAATG | 1 cut(s) | 1068 |
| BseBI | CCWGG | 2 cut(s) | 656, 704 |
| BseDI | CCNNGG | 3 cut(s) | 37, 38, 263 |
| BseGI | GGATG | 5 cut(s) | 33, 249, 556, 703, 930 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 23, 943, 1008, 1086, 1113 |
| BseMI | GCAATG | 1 cut(s) | 1068 |
| BseMII | CTCAG | 2 cut(s) | 378, 1036 |
| BseNI | ACTGG | 3 cut(s) | 770, 925, 937 |
| BseRI | GAGGAG | 1 cut(s) | 404 |
| BseSI | GKGCMC | 2 cut(s) | 866, 1120 |
| BseXI | GCAGC | 2 cut(s) | 201, 1068 |
| Bsh1236I | CGCG | 1 cut(s) | 224 |
| BshFI | GGCC | 3 cut(s) | 702, 936, 1118 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1023 |
| BsiHKCI | CYCGRG | 2 cut(s) | 37, 1113 |
| BsiSI | CCGG | 1 cut(s) | 38 |
| BslFI | GGGAC | 4 cut(s) | 56, 281, 1102, 1116 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 23, 943, 1008, 1086, 1113 |
| BsmAI | GTCTC | 4 cut(s) | 326, 710, 908, 923 |
| BsmFI | GGGAC | 4 cut(s) | 56, 281, 1102, 1116 |
| BsnI | GGCC | 3 cut(s) | 702, 936, 1118 |
| BsoBI | CYCGRG | 2 cut(s) | 37, 1113 |
| Bsp120I | GGGCCC | 1 cut(s) | 1116 |
| Bsp1286I | GDGCHC | 3 cut(s) | 866, 1023, 1120 |
| Bsp143I | GATC | 3 cut(s) | 259, 541, 679 |
| BspACI | CCGC | 2 cut(s) | 224, 311 |
| BspANI | GGCC | 3 cut(s) | 702, 936, 1118 |
| BspCNI | CTCAG | 2 cut(s) | 379, 1035 |
| BspFNI | CGCG | 1 cut(s) | 224 |
| BspHI | TCATGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 6 cut(s) | 15, 228, 261, 1104, 1105, 1118 |
| BspMI | ACCTGC | 1 cut(s) | 393 |
| BspPI | GGATC | 2 cut(s) | 254, 267 |
| BspTI | CTTAAG | 1 cut(s) | 872 |
| BsrDI | GCAATG | 1 cut(s) | 1068 |
| BsrI | ACTGG | 3 cut(s) | 770, 925, 937 |
| BssECI | CCNNGG | 3 cut(s) | 37, 38, 263 |
| BssMI | GATC | 3 cut(s) | 259, 541, 679 |
| BssT1I | CCWWGG | 1 cut(s) | 263 |
| Bst2UI | CCWGG | 2 cut(s) | 656, 704 |
| Bst4CI | ACNGT | 3 cut(s) | 169, 276, 359 |
| Bst6I | CTCTTC | 1 cut(s) | 1043 |
| BstAFI | CTTAAG | 1 cut(s) | 872 |
| BstBAI | YACGTR | 1 cut(s) | 368 |
| BstDEI | CTNAG | 6 cut(s) | 197, 233, 287, 387, 720, 1022 |
| BstF5I | GGATG | 5 cut(s) | 33, 249, 556, 703, 930 |
| BstFNI | CGCG | 1 cut(s) | 224 |
| BstHHI | GCGC | 1 cut(s) | 1061 |
| BstKTI | GATC | 3 cut(s) | 262, 544, 682 |
| BstMAI | GTCTC | 4 cut(s) | 326, 710, 908, 923 |
| BstMBI | GATC | 3 cut(s) | 259, 541, 679 |
| BstNI | CCWGG | 2 cut(s) | 656, 704 |
| BstSCI | CCNGG | 4 cut(s) | 36, 37, 654, 702 |
| BstSLI | GKGCMC | 2 cut(s) | 866, 1120 |
| BstUI | CGCG | 1 cut(s) | 224 |
| BstV1I | GCAGC | 2 cut(s) | 201, 1068 |
| BstX2I | RGATCY | 1 cut(s) | 259 |
| BstYI | RGATCY | 1 cut(s) | 259 |
| BsuRI | GGCC | 3 cut(s) | 702, 936, 1118 |
| BtsCI | GGATG | 5 cut(s) | 33, 249, 556, 703, 930 |
| BtsI | GCAGTG | 1 cut(s) | 752 |
| BtsIMutI | CAGTG | 4 cut(s) | 355, 752, 777, 816 |
| BveI | ACCTGC | 1 cut(s) | 393 |
| CciI | TCATGA | 1 cut(s) | 742 |
| CfoI | GCGC | 1 cut(s) | 1061 |
| Cfr13I | GGNCC | 5 cut(s) | 465, 935, 1103, 1116, 1117 |
| Cfr9I | CCCGGG | 1 cut(s) | 37 |
| CsiI | ACCWGGT | 1 cut(s) | 654 |
| Csp6I | GTAC | 2 cut(s) | 536, 767 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 508, 543 |
| CviAII | CATG | 3 cut(s) | 344, 446, 743 |
| CviQI | GTAC | 2 cut(s) | 536, 767 |
| DdeI | CTNAG | 6 cut(s) | 197, 233, 287, 387, 720, 1022 |
| DpnI | GATC | 3 cut(s) | 261, 543, 681 |
| DpnII | GATC | 3 cut(s) | 259, 541, 679 |
| EaeI | YGGCCR | 1 cut(s) | 700 |
| Eam1104I | CTCTTC | 1 cut(s) | 1043 |
| EarI | CTCTTC | 1 cut(s) | 1043 |
| Eco130I | CCWWGG | 1 cut(s) | 263 |
| Eco24I | GRGCYC | 1 cut(s) | 1120 |
| Eco47I | GGWCC | 2 cut(s) | 465, 1103 |
| Eco57I | CTGAAG | 2 cut(s) | 778, 1064 |
| Eco88I | CYCGRG | 2 cut(s) | 37, 1113 |
| EcoO109I | RGGNCCY | 2 cut(s) | 465, 1103 |
| EcoRI | GAATTC | 1 cut(s) | 515 |
| EcoRII | CCWGG | 2 cut(s) | 654, 702 |
| EcoT14I | CCWWGG | 1 cut(s) | 263 |
| EcoT38I | GRGCYC | 1 cut(s) | 1120 |
| ErhI | CCWWGG | 1 cut(s) | 263 |
| FaeI | CATG | 3 cut(s) | 347, 449, 746 |
| FaiI | YATR | 9 cut(s) | 152, 300, 345, 371, 399, 447, 616, 744, 941 |
| FaqI | GGGAC | 4 cut(s) | 56, 281, 1102, 1116 |
| FatI | CATG | 3 cut(s) | 343, 445, 742 |
| Fnu4HI | GCNGC | 2 cut(s) | 190, 1057 |
| FokI | GGATG | 5 cut(s) | 40, 256, 563, 710, 937 |
| FriOI | GRGCYC | 1 cut(s) | 1120 |
| Fsp4HI | GCNGC | 2 cut(s) | 190, 1057 |
| FspBI | CTAG | 3 cut(s) | 483, 683, 1074 |
| GlaI | GCGC | 1 cut(s) | 1060 |
| GluI | GCNGC | 2 cut(s) | 190, 1057 |
| GsuI | CTGGAG | 1 cut(s) | 495 |
| HaeIII | GGCC | 3 cut(s) | 702, 936, 1118 |
| HapII | CCGG | 1 cut(s) | 38 |
| HhaI | GCGC | 1 cut(s) | 1061 |
| Hin1II | CATG | 3 cut(s) | 347, 449, 746 |
| Hin6I | GCGC | 1 cut(s) | 1059 |
| HinP1I | GCGC | 1 cut(s) | 1059 |
| HincII | GTYRAC | 2 cut(s) | 34, 384 |
| HindII | GTYRAC | 2 cut(s) | 34, 384 |
| HinfI | GANTC | 3 cut(s) | 161, 219, 739 |
| HpaI | GTTAAC | 1 cut(s) | 384 |
| HpaII | CCGG | 1 cut(s) | 38 |
| HphI | GGTGA | 2 cut(s) | 91, 471 |
| Hpy166II | GTNNAC | 3 cut(s) | 34, 332, 384 |
| Hpy188I | TCNGA | 4 cut(s) | 22, 846, 1032, 1081 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 338, 512, 545, 743 |
| Hpy8I | GTNNAC | 3 cut(s) | 34, 332, 384 |
| HpyAV | CCTTC | 5 cut(s) | 114, 688, 874, 963, 1078 |
| HpyCH4III | ACNGT | 3 cut(s) | 169, 276, 359 |
| HpyCH4IV | ACGT | 4 cut(s) | 45, 367, 765, 886 |
| HpyCH4V | TGCA | 6 cut(s) | 98, 253, 445, 457, 836, 978 |
| HpyF3I | CTNAG | 6 cut(s) | 197, 233, 287, 387, 720, 1022 |
| HpySE526I | ACGT | 4 cut(s) | 45, 367, 765, 886 |
| Hsp92II | CATG | 3 cut(s) | 347, 449, 746 |
| HspAI | GCGC | 1 cut(s) | 1059 |
| KflI | GGGWCCC | 1 cut(s) | 1103 |
| KspAI | GTTAAC | 1 cut(s) | 384 |
| Kzo9I | GATC | 3 cut(s) | 259, 541, 679 |
| LmnI | GCTCC | 3 cut(s) | 19, 226, 514 |
| Lsp1109I | GCAGC | 2 cut(s) | 201, 1068 |
| LweI | GCATC | 1 cut(s) | 823 |
| MabI | ACCWGGT | 1 cut(s) | 654 |
| MaeI | CTAG | 3 cut(s) | 483, 683, 1074 |
| MaeII | ACGT | 4 cut(s) | 45, 367, 765, 886 |
| MaeIII | GTNAC | 1 cut(s) | 772 |
| MalI | GATC | 3 cut(s) | 261, 543, 681 |
| MboI | GATC | 3 cut(s) | 259, 541, 679 |
| MboII | GAAGA | 6 cut(s) | 136, 590, 674, 889, 1057, 1060 |
| MfeI | CAATTG | 1 cut(s) | 452 |
| MflI | RGATCY | 1 cut(s) | 259 |
| MhlI | GDGCHC | 3 cut(s) | 866, 1023, 1120 |
| MlsI | TGGCCA | 1 cut(s) | 702 |
| MluCI | AATT | 3 cut(s) | 452, 515, 611 |
| MluNI | TGGCCA | 1 cut(s) | 702 |
| MlyI | GAGTC | 1 cut(s) | 733 |
| MmeI | TCCRAC | 1 cut(s) | 237 |
| MnlI | CCTC | 6 cut(s) | 240, 367, 382, 541, 1005, 1081 |
| Mox20I | TGGCCA | 1 cut(s) | 702 |
| MscI | TGGCCA | 1 cut(s) | 702 |
| MseI | TTAA | 5 cut(s) | 53, 383, 504, 762, 873 |
| Msp20I | TGGCCA | 1 cut(s) | 702 |
| MspCI | CTTAAG | 1 cut(s) | 872 |
| MspI | CCGG | 1 cut(s) | 38 |
| MspR9I | CCNGG | 4 cut(s) | 38, 39, 656, 704 |
| MunI | CAATTG | 1 cut(s) | 452 |
| MvaI | CCWGG | 2 cut(s) | 656, 704 |
| MvnI | CGCG | 1 cut(s) | 224 |
| NciI | CCSGG | 2 cut(s) | 38, 39 |
| NdeII | GATC | 3 cut(s) | 259, 541, 679 |
| NlaIII | CATG | 3 cut(s) | 347, 449, 746 |
| NlaIV | GGNNCC | 6 cut(s) | 15, 228, 261, 1104, 1105, 1118 |
| NmuCI | GTSAC | 1 cut(s) | 772 |
| PagI | TCATGA | 1 cut(s) | 742 |
| PaqCI | CACCTGC | 1 cut(s) | 393 |
| PfeI | GAWTC | 2 cut(s) | 161, 219 |
| PkrI | GCNGC | 2 cut(s) | 191, 1058 |
| PleI | GAGTC | 1 cut(s) | 733 |
| PpsI | GAGTC | 1 cut(s) | 733 |
| Ppu21I | YACGTR | 1 cut(s) | 368 |
| PpuMI | RGGWCCY | 2 cut(s) | 465, 1103 |
| Psp5II | RGGWCCY | 2 cut(s) | 465, 1103 |
| Psp6I | CCWGG | 2 cut(s) | 654, 702 |
| PspGI | CCWGG | 2 cut(s) | 654, 702 |
| PspN4I | GGNNCC | 6 cut(s) | 15, 228, 261, 1104, 1105, 1118 |
| PspOMI | GGGCCC | 1 cut(s) | 1116 |
| PspPI | GGNCC | 5 cut(s) | 465, 935, 1103, 1116, 1117 |
| PspPPI | RGGWCCY | 2 cut(s) | 465, 1103 |
| PsuI | RGATCY | 1 cut(s) | 259 |
| RsaI | GTAC | 2 cut(s) | 537, 768 |
| RsaNI | GTAC | 2 cut(s) | 536, 767 |
| SaqAI | TTAA | 5 cut(s) | 53, 383, 504, 762, 873 |
| SatI | GCNGC | 2 cut(s) | 190, 1057 |
| Sau3AI | GATC | 3 cut(s) | 259, 541, 679 |
| Sau96I | GGNCC | 5 cut(s) | 465, 935, 1103, 1116, 1117 |
| SchI | GAGTC | 1 cut(s) | 733 |
| ScrFI | CCNGG | 4 cut(s) | 38, 39, 656, 704 |
| SduI | GDGCHC | 3 cut(s) | 866, 1023, 1120 |
| SexAI | ACCWGGT | 1 cut(s) | 654 |
| SfaNI | GCATC | 1 cut(s) | 823 |
| SinI | GGWCC | 2 cut(s) | 465, 1103 |
| SmaI | CCCGGG | 1 cut(s) | 39 |
| SmlI | CTYRAG | 1 cut(s) | 872 |
| SmoI | CTYRAG | 1 cut(s) | 872 |
| Sse9I | AATT | 3 cut(s) | 452, 515, 611 |
| SsiI | CCGC | 2 cut(s) | 224, 311 |
| SspMI | CTAG | 3 cut(s) | 483, 683, 1074 |
| StyD4I | CCNGG | 4 cut(s) | 36, 37, 654, 702 |
| StyI | CCWWGG | 1 cut(s) | 263 |
| TaaI | ACNGT | 3 cut(s) | 169, 276, 359 |
| TaiI | ACGT | 4 cut(s) | 48, 370, 768, 889 |
| TaqI | TCGA | 3 cut(s) | 434, 544, 609 |
| TasI | AATT | 3 cut(s) | 452, 515, 611 |
| TfiI | GAWTC | 2 cut(s) | 161, 219 |
| Tru1I | TTAA | 5 cut(s) | 53, 383, 504, 762, 873 |
| Tru9I | TTAA | 5 cut(s) | 53, 383, 504, 762, 873 |
| TscAI | CASTG | 4 cut(s) | 362, 759, 777, 816 |
| TseFI | GTSAC | 1 cut(s) | 772 |
| TseI | GCWGC | 2 cut(s) | 189, 1056 |
| Tsp45I | GTSAC | 1 cut(s) | 772 |
| TspDTI | ATGAA | 4 cut(s) | 139, 296, 315, 641 |
| TspGWI | ACGGA | 2 cut(s) | 6, 173 |
| TspMI | CCCGGG | 1 cut(s) | 37 |
| TspRI | CASTG | 4 cut(s) | 362, 759, 777, 816 |
| Vha464I | CTTAAG | 1 cut(s) | 872 |
| VpaK11BI | GGWCC | 2 cut(s) | 465, 1103 |
| XapI | RAATTY | 1 cut(s) | 515 |
| XmaI | CCCGGG | 1 cut(s) | 37 |
| XspI | CTAG | 3 cut(s) | 483, 683, 1074 |