Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 103 |
| Acc16I | TGCGCA | 1 cut(s) | 269 |
| Acc36I | ACCTGC | 1 cut(s) | 103 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 167 |
| AcoI | YGGCCR | 1 cut(s) | 442 |
| AfaI | GTAC | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 167 |
| AgsI | TTSAA | 2 cut(s) | 455, 461 |
| AjnI | CCWGG | 3 cut(s) | 144, 151, 160 |
| AluBI | AGCT | 4 cut(s) | 141, 247, 418, 467 |
| AluI | AGCT | 4 cut(s) | 141, 247, 418, 467 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| Alw26I | GTCTC | 1 cut(s) | 431 |
| Alw44I | GTGCAC | 1 cut(s) | 30 |
| AoxI | GGCC | 2 cut(s) | 147, 442 |
| ApaLI | GTGCAC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 4 cut(s) | 11, 14, 280, 464 |
| AseI | ATTAAT | 1 cut(s) | 353 |
| AspLEI | GCGC | 2 cut(s) | 173, 270 |
| AspS9I | GGNCC | 2 cut(s) | 90, 148 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| BaeGI | GKGCMC | 1 cut(s) | 34 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 211, 244 |
| BalI | TGGCCA | 1 cut(s) | 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BbvI | GCAGC | 2 cut(s) | 267, 476 |
| BccI | CCATC | 4 cut(s) | 80, 161, 207, 385 |
| BceAI | ACGGC | 1 cut(s) | 50 |
| BciT130I | CCWGG | 3 cut(s) | 146, 153, 162 |
| BclI | TGATCA | 1 cut(s) | 337 |
| BcoDI | GTCTC | 1 cut(s) | 431 |
| BfaI | CTAG | 1 cut(s) | 260 |
| BfmI | CTRYAG | 3 cut(s) | 15, 281, 315 |
| BfuAI | ACCTGC | 1 cut(s) | 103 |
| BisI | GCNGC | 4 cut(s) | 12, 15, 281, 465 |
| BlsI | GCNGC | 4 cut(s) | 13, 16, 282, 466 |
| Bme1390I | CCNGG | 3 cut(s) | 146, 153, 162 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmgT120I | GGNCC | 2 cut(s) | 90, 148 |
| BmiI | GGNNCC | 3 cut(s) | 91, 150, 159 |
| BmrFI | CCNGG | 3 cut(s) | 146, 153, 162 |
| BmsI | GCATC | 2 cut(s) | 255, 385 |
| BpmI | CTGGAG | 1 cut(s) | 244 |
| BsaBI | GATNNNNATC | 1 cut(s) | 336 |
| BsaJI | CCNNGG | 2 cut(s) | 151, 152 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 292, 322 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 167 |
| Bse1I | ACTGG | 2 cut(s) | 227, 445 |
| Bse8I | GATNNNNATC | 1 cut(s) | 336 |
| BseBI | CCWGG | 3 cut(s) | 146, 153, 162 |
| BseDI | CCNNGG | 2 cut(s) | 151, 152 |
| BseGI | GGATG | 2 cut(s) | 129, 400 |
| BseJI | GATNNNNATC | 1 cut(s) | 336 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 167 |
| BseMII | CTCAG | 1 cut(s) | 227 |
| BseNI | ACTGG | 2 cut(s) | 227, 445 |
| BseSI | GKGCMC | 1 cut(s) | 34 |
| BseXI | GCAGC | 2 cut(s) | 267, 476 |
| BshFI | GGCC | 2 cut(s) | 149, 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 167 |
| BsmAI | GTCTC | 1 cut(s) | 431 |
| BsmI | GAATGC | 1 cut(s) | 374 |
| BsnI | GGCC | 2 cut(s) | 149, 444 |
| Bsp1286I | GDGCHC | 1 cut(s) | 34 |
| Bsp143I | GATC | 1 cut(s) | 337 |
| BspANI | GGCC | 2 cut(s) | 149, 444 |
| BspCNI | CTCAG | 1 cut(s) | 228 |
| BspLI | GGNNCC | 3 cut(s) | 91, 150, 159 |
| BspMAI | CTGCAG | 2 cut(s) | 19, 285 |
| BspMI | ACCTGC | 1 cut(s) | 103 |
| BsrI | ACTGG | 2 cut(s) | 227, 445 |
| BssECI | CCNNGG | 2 cut(s) | 151, 152 |
| BssMI | GATC | 1 cut(s) | 337 |
| Bst2UI | CCWGG | 3 cut(s) | 146, 153, 162 |
| Bst4CI | ACNGT | 1 cut(s) | 55 |
| BstC8I | GCNNGC | 1 cut(s) | 180 |
| BstDEI | CTNAG | 1 cut(s) | 236 |
| BstF5I | GGATG | 2 cut(s) | 129, 400 |
| BstHHI | GCGC | 2 cut(s) | 173, 270 |
| BstKTI | GATC | 1 cut(s) | 340 |
| BstMAI | GTCTC | 1 cut(s) | 431 |
| BstMBI | GATC | 1 cut(s) | 337 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 179, 289, 470 |
| BstNI | CCWGG | 3 cut(s) | 146, 153, 162 |
| BstNSI | RCATGY | 1 cut(s) | 477 |
| BstSCI | CCNGG | 3 cut(s) | 144, 151, 160 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 281, 315 |
| BstSLI | GKGCMC | 1 cut(s) | 34 |
| BstV1I | GCAGC | 2 cut(s) | 267, 476 |
| BsuRI | GGCC | 2 cut(s) | 149, 444 |
| BtsCI | GGATG | 2 cut(s) | 129, 400 |
| BveI | ACCTGC | 1 cut(s) | 103 |
| Cac8I | GCNNGC | 1 cut(s) | 180 |
| CfoI | GCGC | 2 cut(s) | 173, 270 |
| Cfr13I | GGNCC | 2 cut(s) | 90, 148 |
| Csp6I | GTAC | 1 cut(s) | 228 |
| CviAII | CATG | 5 cut(s) | 78, 384, 434, 474, 501 |
| CviQI | GTAC | 1 cut(s) | 228 |
| DdeI | CTNAG | 1 cut(s) | 236 |
| DpnI | GATC | 1 cut(s) | 339 |
| DpnII | GATC | 1 cut(s) | 337 |
| EaeI | YGGCCR | 1 cut(s) | 442 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| EcoRII | CCWGG | 3 cut(s) | 144, 151, 160 |
| EcoT22I | ATGCAT | 1 cut(s) | 79 |
| FaeI | CATG | 5 cut(s) | 81, 387, 437, 477, 504 |
| FaiI | YATR | 9 cut(s) | 75, 79, 218, 299, 385, 411, 435, 475, 502 |
| FatI | CATG | 5 cut(s) | 77, 383, 433, 473, 500 |
| FbaI | TGATCA | 1 cut(s) | 337 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 15, 281, 465 |
| FokI | GGATG | 2 cut(s) | 136, 407 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 15, 281, 465 |
| FspBI | CTAG | 1 cut(s) | 260 |
| FspI | TGCGCA | 1 cut(s) | 269 |
| GlaI | GCGC | 2 cut(s) | 172, 269 |
| GluI | GCNGC | 4 cut(s) | 12, 15, 281, 465 |
| GsuI | CTGGAG | 1 cut(s) | 244 |
| HaeIII | GGCC | 2 cut(s) | 149, 444 |
| HhaI | GCGC | 2 cut(s) | 173, 270 |
| Hin1II | CATG | 5 cut(s) | 81, 387, 437, 477, 504 |
| Hin6I | GCGC | 2 cut(s) | 171, 268 |
| HinP1I | GCGC | 2 cut(s) | 171, 268 |
| Hpy166II | GTNNAC | 1 cut(s) | 32 |
| Hpy188III | TCNNGA | 2 cut(s) | 121, 260 |
| Hpy8I | GTNNAC | 1 cut(s) | 32 |
| HpyCH4III | ACNGT | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 32, 77, 283 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 179, 289, 470 |
| HpyF3I | CTNAG | 1 cut(s) | 236 |
| Hsp92II | CATG | 5 cut(s) | 81, 387, 437, 477, 504 |
| HspAI | GCGC | 2 cut(s) | 171, 268 |
| Ksp22I | TGATCA | 1 cut(s) | 337 |
| Kzo9I | GATC | 1 cut(s) | 337 |
| LmnI | GCTCC | 1 cut(s) | 415 |
| Lsp1109I | GCAGC | 2 cut(s) | 267, 476 |
| LweI | GCATC | 2 cut(s) | 255, 385 |
| MaeI | CTAG | 1 cut(s) | 260 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 1 cut(s) | 339 |
| MboI | GATC | 1 cut(s) | 337 |
| MboII | GAAGA | 1 cut(s) | 417 |
| MhlI | GDGCHC | 1 cut(s) | 34 |
| MlsI | TGGCCA | 1 cut(s) | 444 |
| MluCI | AATT | 1 cut(s) | 456 |
| MluNI | TGGCCA | 1 cut(s) | 444 |
| MnlI | CCTC | 2 cut(s) | 90, 203 |
| Mox20I | TGGCCA | 1 cut(s) | 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 79 |
| MscI | TGGCCA | 1 cut(s) | 444 |
| MseI | TTAA | 1 cut(s) | 353 |
| Msp20I | TGGCCA | 1 cut(s) | 444 |
| MspR9I | CCNGG | 3 cut(s) | 146, 153, 162 |
| Mva1269I | GAATGC | 1 cut(s) | 374 |
| MvaI | CCWGG | 3 cut(s) | 146, 153, 162 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 179, 289, 470 |
| NdeII | GATC | 1 cut(s) | 337 |
| NlaIII | CATG | 5 cut(s) | 81, 387, 437, 477, 504 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 150, 159 |
| NsbI | TGCGCA | 1 cut(s) | 269 |
| NsiI | ATGCAT | 1 cut(s) | 79 |
| NspI | RCATGY | 1 cut(s) | 477 |
| PaqCI | CACCTGC | 1 cut(s) | 103 |
| PasI | CCCWGGG | 1 cut(s) | 152 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 199 |
| PctI | GAATGC | 1 cut(s) | 374 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 167 |
| PfoI | TCCNGGA | 1 cut(s) | 160 |
| PkrI | GCNGC | 4 cut(s) | 13, 16, 282, 466 |
| PshBI | ATTAAT | 1 cut(s) | 353 |
| Psp6I | CCWGG | 3 cut(s) | 144, 151, 160 |
| PspGI | CCWGG | 3 cut(s) | 144, 151, 160 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 150, 159 |
| PspPI | GGNCC | 2 cut(s) | 90, 148 |
| PstI | CTGCAG | 2 cut(s) | 19, 285 |
| RsaI | GTAC | 1 cut(s) | 229 |
| RsaNI | GTAC | 1 cut(s) | 228 |
| SaqAI | TTAA | 1 cut(s) | 353 |
| SatI | GCNGC | 4 cut(s) | 12, 15, 281, 465 |
| Sau3AI | GATC | 1 cut(s) | 337 |
| Sau96I | GGNCC | 2 cut(s) | 90, 148 |
| ScrFI | CCNGG | 3 cut(s) | 146, 153, 162 |
| SduI | GDGCHC | 1 cut(s) | 34 |
| SfaNI | GCATC | 2 cut(s) | 255, 385 |
| SfcI | CTRYAG | 3 cut(s) | 15, 281, 315 |
| SinI | GGWCC | 1 cut(s) | 90 |
| Sse9I | AATT | 1 cut(s) | 456 |
| SspMI | CTAG | 1 cut(s) | 260 |
| StyD4I | CCNGG | 3 cut(s) | 144, 151, 160 |
| TaaI | ACNGT | 1 cut(s) | 55 |
| TaqI | TCGA | 1 cut(s) | 202 |
| TasI | AATT | 1 cut(s) | 456 |
| Tru1I | TTAA | 1 cut(s) | 353 |
| Tru9I | TTAA | 1 cut(s) | 353 |
| TseI | GCWGC | 4 cut(s) | 11, 14, 280, 464 |
| TspDTI | ATGAA | 1 cut(s) | 372 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 167 |
| VneI | GTGCAC | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| VspI | ATTAAT | 1 cut(s) | 353 |
| XbaI | TCTAGA | 1 cut(s) | 259 |
| XceI | RCATGY | 1 cut(s) | 477 |
| XspI | CTAG | 1 cut(s) | 260 |
| Zsp2I | ATGCAT | 1 cut(s) | 79 |