ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Sey1_3HB | PF20428 | 5 - 217 | 1.2e-53 | Sey1 three-helix bundle domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 519 |
| AciI | CCGC | 1 cut(s) | 517 |
| AclWI | GGATC | 3 cut(s) | 419, 432, 660 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AfaI | GTAC | 3 cut(s) | 21, 103, 625 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 421, 507 |
| AflII | CTTAAG | 1 cut(s) | 137 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| AluBI | AGCT | 6 cut(s) | 61, 136, 179, 215, 551, 657 |
| AluI | AGCT | 6 cut(s) | 61, 136, 179, 215, 551, 657 |
| Alw26I | GTCTC | 4 cut(s) | 241, 257, 531, 743 |
| AlwI | GGATC | 3 cut(s) | 419, 432, 660 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 768 |
| ApeKI | GCWGC | 2 cut(s) | 14, 551 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| AspA2I | CCTAGG | 1 cut(s) | 467 |
| AspS9I | GGNCC | 2 cut(s) | 316, 498 |
| AvaII | GGWCC | 2 cut(s) | 316, 498 |
| AvrII | CCTAGG | 1 cut(s) | 467 |
| BamHI | GGATCC | 1 cut(s) | 424 |
| BanII | GRGCYC | 1 cut(s) | 205 |
| BbsI | GAAGAC | 3 cut(s) | 231, 433, 495 |
| BbvI | GCAGC | 1 cut(s) | 538 |
| BccI | CCATC | 1 cut(s) | 608 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 322, 356 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BciVI | GTATCC | 2 cut(s) | 31, 704 |
| BcoDI | GTCTC | 4 cut(s) | 241, 257, 531, 743 |
| BfaI | CTAG | 1 cut(s) | 468 |
| BfmI | CTRYAG | 1 cut(s) | 273 |
| BfrI | CTTAAG | 1 cut(s) | 137 |
| BfuI | GTATCC | 2 cut(s) | 31, 704 |
| BisI | GCNGC | 2 cut(s) | 15, 552 |
| BlnI | CCTAGG | 1 cut(s) | 467 |
| BlsI | GCNGC | 2 cut(s) | 16, 553 |
| Bme1390I | CCNGG | 1 cut(s) | 232 |
| Bme18I | GGWCC | 2 cut(s) | 316, 498 |
| BmgT120I | GGNCC | 2 cut(s) | 316, 498 |
| BmiI | GGNNCC | 1 cut(s) | 426 |
| BmrFI | CCNGG | 1 cut(s) | 232 |
| BmrI | ACTGGG | 1 cut(s) | 489 |
| BmsI | GCATC | 2 cut(s) | 67, 502 |
| BmuI | ACTGGG | 1 cut(s) | 489 |
| BpiI | GAAGAC | 3 cut(s) | 231, 433, 495 |
| BpmI | CTGGAG | 1 cut(s) | 237 |
| BpuEI | CTTGAG | 1 cut(s) | 515 |
| BsaJI | CCNNGG | 2 cut(s) | 231, 467 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 421, 507 |
| Bse1I | ACTGG | 3 cut(s) | 484, 625, 726 |
| Bse3DI | GCAATG | 1 cut(s) | 738 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseDI | CCNNGG | 2 cut(s) | 231, 467 |
| BseGI | GGATG | 2 cut(s) | 517, 571 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 421, 507 |
| BseMI | GCAATG | 1 cut(s) | 738 |
| BseMII | CTCAG | 1 cut(s) | 189 |
| BseNI | ACTGG | 3 cut(s) | 484, 625, 726 |
| BseRI | GAGGAG | 2 cut(s) | 234, 705 |
| BseXI | GCAGC | 1 cut(s) | 538 |
| BseYI | CCCAGC | 1 cut(s) | 398 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 421, 507 |
| BsmAI | GTCTC | 4 cut(s) | 241, 257, 531, 743 |
| BsmBI | CGTCTC | 1 cut(s) | 531 |
| Bsp1286I | GDGCHC | 1 cut(s) | 205 |
| Bsp1407I | TGTACA | 1 cut(s) | 19 |
| Bsp143I | GATC | 2 cut(s) | 424, 665 |
| BspACI | CCGC | 1 cut(s) | 517 |
| BspCNI | CTCAG | 1 cut(s) | 188 |
| BspLI | GGNNCC | 1 cut(s) | 426 |
| BspPI | GGATC | 3 cut(s) | 419, 432, 660 |
| BspTI | CTTAAG | 1 cut(s) | 137 |
| BsrBI | CCGCTC | 1 cut(s) | 519 |
| BsrDI | GCAATG | 1 cut(s) | 738 |
| BsrGI | TGTACA | 1 cut(s) | 19 |
| BsrI | ACTGG | 3 cut(s) | 484, 625, 726 |
| BssECI | CCNNGG | 2 cut(s) | 231, 467 |
| BssMI | GATC | 2 cut(s) | 424, 665 |
| BssT1I | CCWWGG | 1 cut(s) | 467 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 4 cut(s) | 439, 455, 745, 754 |
| Bst6I | CTCTTC | 1 cut(s) | 387 |
| BstAFI | CTTAAG | 1 cut(s) | 137 |
| BstAUI | TGTACA | 1 cut(s) | 19 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 517 |
| BstDEI | CTNAG | 1 cut(s) | 175 |
| BstF5I | GGATG | 2 cut(s) | 517, 571 |
| BstKTI | GATC | 2 cut(s) | 427, 668 |
| BstMAI | GTCTC | 4 cut(s) | 241, 257, 531, 743 |
| BstMBI | GATC | 2 cut(s) | 424, 665 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 521 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstSCI | CCNGG | 1 cut(s) | 230 |
| BstSFI | CTRYAG | 1 cut(s) | 273 |
| BstV1I | GCAGC | 1 cut(s) | 538 |
| BstV2I | GAAGAC | 3 cut(s) | 231, 433, 495 |
| BstX2I | RGATCY | 2 cut(s) | 424, 665 |
| BstYI | RGATCY | 2 cut(s) | 424, 665 |
| BsuI | GTATCC | 2 cut(s) | 31, 704 |
| BtsCI | GGATG | 2 cut(s) | 517, 571 |
| BtsIMutI | CAGTG | 3 cut(s) | 460, 733, 741 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 768 |
| Cfr13I | GGNCC | 2 cut(s) | 316, 498 |
| CseI | GACGC | 1 cut(s) | 513 |
| Csp6I | GTAC | 3 cut(s) | 20, 102, 624 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 351, 386 |
| CviAII | CATG | 2 cut(s) | 83, 418 |
| CviQI | GTAC | 3 cut(s) | 20, 102, 624 |
| DdeI | CTNAG | 1 cut(s) | 175 |
| DpnI | GATC | 2 cut(s) | 426, 667 |
| DpnII | GATC | 2 cut(s) | 424, 665 |
| Eam1104I | CTCTTC | 1 cut(s) | 387 |
| EarI | CTCTTC | 1 cut(s) | 387 |
| Eco130I | CCWWGG | 1 cut(s) | 467 |
| Eco24I | GRGCYC | 1 cut(s) | 205 |
| Eco47I | GGWCC | 2 cut(s) | 316, 498 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoT14I | CCWWGG | 1 cut(s) | 467 |
| EcoT38I | GRGCYC | 1 cut(s) | 205 |
| ErhI | CCWWGG | 1 cut(s) | 467 |
| Esp3I | CGTCTC | 1 cut(s) | 531 |
| FaeI | CATG | 2 cut(s) | 86, 421 |
| FaiI | YATR | 8 cut(s) | 8, 84, 132, 360, 419, 475, 503, 596 |
| FatI | CATG | 2 cut(s) | 82, 417 |
| FauI | CCCGC | 1 cut(s) | 524 |
| Fnu4HI | GCNGC | 2 cut(s) | 15, 552 |
| FokI | GGATG | 2 cut(s) | 524, 578 |
| FriOI | GRGCYC | 1 cut(s) | 205 |
| Fsp4HI | GCNGC | 2 cut(s) | 15, 552 |
| FspBI | CTAG | 1 cut(s) | 468 |
| GluI | GCNGC | 2 cut(s) | 15, 552 |
| GsaI | CCCAGC | 1 cut(s) | 402 |
| GsuI | CTGGAG | 1 cut(s) | 237 |
| HgaI | GACGC | 1 cut(s) | 513 |
| Hin1II | CATG | 2 cut(s) | 86, 421 |
| HinfI | GANTC | 2 cut(s) | 269, 458 |
| Hpy188I | TCNGA | 5 cut(s) | 65, 115, 283, 718, 764 |
| Hpy188III | TCNNGA | 3 cut(s) | 45, 53, 532 |
| HpyAV | CCTTC | 2 cut(s) | 415, 478 |
| HpyCH4III | ACNGT | 4 cut(s) | 439, 455, 745, 754 |
| HpyCH4V | TGCA | 5 cut(s) | 343, 362, 675, 731, 736 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 521 |
| HpyF3I | CTNAG | 1 cut(s) | 175 |
| Hsp92II | CATG | 2 cut(s) | 86, 421 |
| Kzo9I | GATC | 2 cut(s) | 424, 665 |
| LmnI | GCTCC | 2 cut(s) | 66, 417 |
| Lsp1109I | GCAGC | 1 cut(s) | 538 |
| LweI | GCATC | 2 cut(s) | 67, 502 |
| MaeI | CTAG | 1 cut(s) | 468 |
| MaeIII | GTNAC | 2 cut(s) | 322, 449 |
| MalI | GATC | 2 cut(s) | 426, 667 |
| MbiI | CCGCTC | 1 cut(s) | 519 |
| MboI | GATC | 2 cut(s) | 424, 665 |
| MboII | GAAGA | 5 cut(s) | 236, 404, 433, 500, 594 |
| MfeI | CAATTG | 2 cut(s) | 327, 445 |
| MflI | RGATCY | 2 cut(s) | 424, 665 |
| MhlI | GDGCHC | 1 cut(s) | 205 |
| MluCI | AATT | 8 cut(s) | 31, 116, 127, 256, 327, 346, 445, 609 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MnlI | CCTC | 8 cut(s) | 97, 160, 212, 388, 646, 679, 683, 686 |
| MseI | TTAA | 4 cut(s) | 138, 185, 255, 350 |
| MspCI | CTTAAG | 1 cut(s) | 137 |
| MspR9I | CCNGG | 1 cut(s) | 232 |
| MunI | CAATTG | 2 cut(s) | 327, 445 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 521 |
| NdeII | GATC | 2 cut(s) | 424, 665 |
| NlaIII | CATG | 2 cut(s) | 86, 421 |
| NlaIV | GGNNCC | 1 cut(s) | 426 |
| NmuCI | GTSAC | 1 cut(s) | 449 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 644 |
| PfeI | GAWTC | 2 cut(s) | 269, 458 |
| PkrI | GCNGC | 2 cut(s) | 16, 553 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspFI | CCCAGC | 1 cut(s) | 398 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 1 cut(s) | 426 |
| PspPI | GGNCC | 2 cut(s) | 316, 498 |
| PstNI | CAGNNNCTG | 1 cut(s) | 768 |
| PsuI | RGATCY | 2 cut(s) | 424, 665 |
| RsaI | GTAC | 3 cut(s) | 21, 103, 625 |
| RsaNI | GTAC | 3 cut(s) | 20, 102, 624 |
| SaqAI | TTAA | 4 cut(s) | 138, 185, 255, 350 |
| SatI | GCNGC | 2 cut(s) | 15, 552 |
| Sau3AI | GATC | 2 cut(s) | 424, 665 |
| Sau96I | GGNCC | 2 cut(s) | 316, 498 |
| ScrFI | CCNGG | 1 cut(s) | 232 |
| SduI | GDGCHC | 1 cut(s) | 205 |
| SfaNI | GCATC | 2 cut(s) | 67, 502 |
| SfcI | CTRYAG | 1 cut(s) | 273 |
| SinI | GGWCC | 2 cut(s) | 316, 498 |
| SmlI | CTYRAG | 2 cut(s) | 137, 530 |
| SmoI | CTYRAG | 2 cut(s) | 137, 530 |
| Sse9I | AATT | 8 cut(s) | 31, 116, 127, 256, 327, 346, 445, 609 |
| SsiI | CCGC | 1 cut(s) | 517 |
| SspI | AATATT | 1 cut(s) | 583 |
| SspMI | CTAG | 1 cut(s) | 468 |
| StyD4I | CCNGG | 1 cut(s) | 230 |
| StyI | CCWWGG | 1 cut(s) | 467 |
| TaaI | ACNGT | 4 cut(s) | 439, 455, 745, 754 |
| TasI | AATT | 8 cut(s) | 31, 116, 127, 256, 327, 346, 445, 609 |
| TatI | WGTACW | 2 cut(s) | 19, 101 |
| TfiI | GAWTC | 2 cut(s) | 269, 458 |
| Tru1I | TTAA | 4 cut(s) | 138, 185, 255, 350 |
| Tru9I | TTAA | 4 cut(s) | 138, 185, 255, 350 |
| TscAI | CASTG | 3 cut(s) | 460, 733, 748 |
| TseFI | GTSAC | 1 cut(s) | 449 |
| TseI | GCWGC | 2 cut(s) | 14, 551 |
| Tsp45I | GTSAC | 1 cut(s) | 449 |
| TspDTI | ATGAA | 1 cut(s) | 434 |
| TspGWI | ACGGA | 1 cut(s) | 417 |
| TspRI | CASTG | 3 cut(s) | 460, 733, 748 |
| Vha464I | CTTAAG | 1 cut(s) | 137 |
| VpaK11BI | GGWCC | 2 cut(s) | 316, 498 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XmaJI | CCTAGG | 1 cut(s) | 467 |
| XspI | CTAG | 1 cut(s) | 468 |