Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AciI | CCGC | 4 cut(s) | 56, 103, 194, 332 |
| AcuI | CTGAAG | 3 cut(s) | 186, 247, 386 |
| AcyI | GRCGYC | 1 cut(s) | 302 |
| AfaI | GTAC | 3 cut(s) | 27, 143, 166 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 194, 367, 368, 526 |
| AgsI | TTSAA | 4 cut(s) | 236, 316, 397, 449 |
| AjnI | CCWGG | 1 cut(s) | 590 |
| Alw26I | GTCTC | 1 cut(s) | 300 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 344 |
| Ama87I | CYCGRG | 1 cut(s) | 297 |
| AoxI | GGCC | 1 cut(s) | 588 |
| ApeKI | GCWGC | 1 cut(s) | 431 |
| AseI | ATTAAT | 1 cut(s) | 374 |
| AspLEI | GCGC | 2 cut(s) | 304, 465 |
| AspS9I | GGNCC | 1 cut(s) | 351 |
| AsuC2I | CCSGG | 1 cut(s) | 527 |
| AvaI | CYCGRG | 1 cut(s) | 297 |
| AvaII | GGWCC | 1 cut(s) | 351 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BbsI | GAAGAC | 1 cut(s) | 192 |
| BbvI | GCAGC | 1 cut(s) | 443 |
| BceAI | ACGGC | 1 cut(s) | 230 |
| BciT130I | CCWGG | 1 cut(s) | 592 |
| BciVI | GTATCC | 1 cut(s) | 177 |
| BcnI | CCSGG | 1 cut(s) | 527 |
| BcoDI | GTCTC | 1 cut(s) | 300 |
| BfoI | RGCGCY | 2 cut(s) | 305, 466 |
| BfuI | GTATCC | 1 cut(s) | 177 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 596 |
| BglII | AGATCT | 3 cut(s) | 205, 277, 441 |
| BisI | GCNGC | 1 cut(s) | 432 |
| BlsI | GCNGC | 1 cut(s) | 433 |
| Bme1390I | CCNGG | 2 cut(s) | 527, 592 |
| Bme18I | GGWCC | 1 cut(s) | 351 |
| BmeT110I | CYCGRG | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 1 cut(s) | 351 |
| BmiI | GGNNCC | 2 cut(s) | 303, 352 |
| BmrFI | CCNGG | 2 cut(s) | 527, 592 |
| BmsI | GCATC | 2 cut(s) | 431, 539 |
| BpiI | GAAGAC | 1 cut(s) | 192 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 111, 143 |
| BpuMI | CCSGG | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 1 cut(s) | 302 |
| BsaJI | CCNNGG | 1 cut(s) | 305 |
| BsaWI | WCCGGW | 1 cut(s) | 187 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 182, 212, 377, 407, 578 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 194, 367, 368, 526 |
| BseBI | CCWGG | 1 cut(s) | 592 |
| BseDI | CCNNGG | 1 cut(s) | 305 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 194, 367, 368, 526 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseXI | GCAGC | 1 cut(s) | 443 |
| BshFI | GGCC | 1 cut(s) | 590 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BsiHKCI | CYCGRG | 1 cut(s) | 297 |
| BsiSI | CCGG | 2 cut(s) | 188, 526 |
| BslFI | GGGAC | 1 cut(s) | 364 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 194, 367, 368, 526 |
| BsmAI | GTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 1 cut(s) | 364 |
| BsnI | GGCC | 1 cut(s) | 590 |
| BsoBI | CYCGRG | 1 cut(s) | 297 |
| Bsp143I | GATC | 3 cut(s) | 205, 277, 441 |
| BspACI | CCGC | 4 cut(s) | 56, 103, 194, 332 |
| BspANI | GGCC | 1 cut(s) | 590 |
| BspCNI | CTCAG | 1 cut(s) | 88 |
| BspLI | GGNNCC | 2 cut(s) | 303, 352 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BssECI | CCNNGG | 1 cut(s) | 305 |
| BssMI | GATC | 3 cut(s) | 205, 277, 441 |
| BssNI | GRCGYC | 1 cut(s) | 302 |
| BssT1I | CCWWGG | 1 cut(s) | 305 |
| Bst2UI | CCWGG | 1 cut(s) | 592 |
| Bst4CI | ACNGT | 4 cut(s) | 141, 146, 355, 393 |
| BstACI | GRCGYC | 1 cut(s) | 302 |
| BstDEI | CTNAG | 2 cut(s) | 75, 99 |
| BstH2I | RGCGCY | 2 cut(s) | 305, 466 |
| BstHHI | GCGC | 2 cut(s) | 304, 465 |
| BstKTI | GATC | 3 cut(s) | 208, 280, 444 |
| BstMAI | GTCTC | 1 cut(s) | 300 |
| BstMBI | GATC | 3 cut(s) | 205, 277, 441 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 329, 428, 596 |
| BstNI | CCWGG | 1 cut(s) | 592 |
| BstSCI | CCNGG | 2 cut(s) | 525, 590 |
| BstV1I | GCAGC | 1 cut(s) | 443 |
| BstV2I | GAAGAC | 1 cut(s) | 192 |
| BstX2I | RGATCY | 3 cut(s) | 205, 277, 441 |
| BstYI | RGATCY | 3 cut(s) | 205, 277, 441 |
| BsuI | GTATCC | 1 cut(s) | 177 |
| BsuRI | GGCC | 1 cut(s) | 590 |
| BtsI | GCAGTG | 2 cut(s) | 345, 606 |
| BtsIMutI | CAGTG | 2 cut(s) | 345, 606 |
| CaiI | CAGNNNCTG | 1 cut(s) | 344 |
| CfoI | GCGC | 2 cut(s) | 304, 465 |
| Cfr13I | GGNCC | 1 cut(s) | 351 |
| Csp6I | GTAC | 3 cut(s) | 26, 142, 165 |
| CviJI | RGCY | 3 cut(s) | 217, 525, 590 |
| CviKI_1 | RGCY | 3 cut(s) | 217, 525, 590 |
| CviQI | GTAC | 3 cut(s) | 26, 142, 165 |
| DdeI | CTNAG | 2 cut(s) | 75, 99 |
| DinI | GGCGCC | 1 cut(s) | 303 |
| DpnI | GATC | 3 cut(s) | 207, 279, 443 |
| DpnII | GATC | 3 cut(s) | 205, 277, 441 |
| Eco130I | CCWWGG | 1 cut(s) | 305 |
| Eco147I | AGGCCT | 1 cut(s) | 590 |
| Eco47I | GGWCC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 3 cut(s) | 186, 247, 386 |
| Eco88I | CYCGRG | 1 cut(s) | 297 |
| EcoRII | CCWGG | 1 cut(s) | 590 |
| EcoT14I | CCWWGG | 1 cut(s) | 305 |
| EgeI | GGCGCC | 1 cut(s) | 303 |
| EheI | GGCGCC | 1 cut(s) | 303 |
| ErhI | CCWWGG | 1 cut(s) | 305 |
| FaiI | YATR | 4 cut(s) | 181, 459, 489, 504 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 92, 124 |
| FaqI | GGGAC | 1 cut(s) | 364 |
| FauI | CCCGC | 1 cut(s) | 187 |
| Fnu4HI | GCNGC | 1 cut(s) | 432 |
| Fsp4HI | GCNGC | 1 cut(s) | 432 |
| GlaI | GCGC | 2 cut(s) | 303, 464 |
| GluI | GCNGC | 1 cut(s) | 432 |
| HaeII | RGCGCY | 2 cut(s) | 305, 466 |
| HaeIII | GGCC | 1 cut(s) | 590 |
| HapII | CCGG | 2 cut(s) | 188, 526 |
| HhaI | GCGC | 2 cut(s) | 304, 465 |
| Hin1I | GRCGYC | 1 cut(s) | 302 |
| Hin6I | GCGC | 2 cut(s) | 302, 463 |
| HinP1I | GCGC | 2 cut(s) | 302, 463 |
| HincII | GTYRAC | 1 cut(s) | 358 |
| HindII | GTYRAC | 1 cut(s) | 358 |
| HinfI | GANTC | 3 cut(s) | 47, 152, 250 |
| HpaII | CCGG | 2 cut(s) | 188, 526 |
| Hpy166II | GTNNAC | 1 cut(s) | 358 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 78, 205 |
| Hpy8I | GTNNAC | 1 cut(s) | 358 |
| HpyAV | CCTTC | 4 cut(s) | 230, 240, 271, 361 |
| HpyCH4III | ACNGT | 4 cut(s) | 141, 146, 355, 393 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 329, 428, 596 |
| HpyF3I | CTNAG | 2 cut(s) | 75, 99 |
| Hsp92I | GRCGYC | 1 cut(s) | 302 |
| HspAI | GCGC | 2 cut(s) | 302, 463 |
| KasI | GGCGCC | 1 cut(s) | 301 |
| Kzo9I | GATC | 3 cut(s) | 205, 277, 441 |
| LmnI | GCTCC | 1 cut(s) | 419 |
| LpnPI | CCDG | 8 cut(s) | 98, 201, 377, 401, 492, 519, 539, 577 |
| Lsp1109I | GCAGC | 1 cut(s) | 443 |
| LweI | GCATC | 2 cut(s) | 431, 539 |
| MaeIII | GTNAC | 1 cut(s) | 340 |
| MalI | GATC | 3 cut(s) | 207, 279, 443 |
| MboI | GATC | 3 cut(s) | 205, 277, 441 |
| MboII | GAAGA | 2 cut(s) | 91, 192 |
| MflI | RGATCY | 3 cut(s) | 205, 277, 441 |
| MluCI | AATT | 5 cut(s) | 122, 159, 272, 375, 449 |
| Mly113I | GGCGCC | 1 cut(s) | 302 |
| MnlI | CCTC | 5 cut(s) | 46, 55, 84, 184, 580 |
| MseI | TTAA | 2 cut(s) | 158, 374 |
| MspI | CCGG | 2 cut(s) | 188, 526 |
| MspR9I | CCNGG | 2 cut(s) | 527, 592 |
| MvaI | CCWGG | 1 cut(s) | 592 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 329, 428, 596 |
| NarI | GGCGCC | 1 cut(s) | 302 |
| NciI | CCSGG | 1 cut(s) | 527 |
| NdeII | GATC | 3 cut(s) | 205, 277, 441 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 352 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 590 |
| PfeI | GAWTC | 3 cut(s) | 47, 152, 250 |
| PkrI | GCNGC | 1 cut(s) | 433 |
| PluTI | GGCGCC | 1 cut(s) | 305 |
| PshBI | ATTAAT | 1 cut(s) | 374 |
| Psp6I | CCWGG | 1 cut(s) | 590 |
| PspGI | CCWGG | 1 cut(s) | 590 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 352 |
| PspPI | GGNCC | 1 cut(s) | 351 |
| PstNI | CAGNNNCTG | 1 cut(s) | 344 |
| PsuI | RGATCY | 3 cut(s) | 205, 277, 441 |
| RsaI | GTAC | 3 cut(s) | 27, 143, 166 |
| RsaNI | GTAC | 3 cut(s) | 26, 142, 165 |
| SaqAI | TTAA | 2 cut(s) | 158, 374 |
| SatI | GCNGC | 1 cut(s) | 432 |
| Sau3AI | GATC | 3 cut(s) | 205, 277, 441 |
| Sau96I | GGNCC | 1 cut(s) | 351 |
| ScrFI | CCNGG | 2 cut(s) | 527, 592 |
| SetI | ASST | 2 cut(s) | 66, 511 |
| SfaNI | GCATC | 2 cut(s) | 431, 539 |
| SfoI | GGCGCC | 1 cut(s) | 303 |
| SinI | GGWCC | 1 cut(s) | 351 |
| Sse9I | AATT | 5 cut(s) | 122, 159, 272, 375, 449 |
| SseBI | AGGCCT | 1 cut(s) | 590 |
| SsiI | CCGC | 4 cut(s) | 56, 103, 194, 332 |
| SspDI | GGCGCC | 1 cut(s) | 301 |
| StuI | AGGCCT | 1 cut(s) | 590 |
| StyD4I | CCNGG | 2 cut(s) | 525, 590 |
| StyI | CCWWGG | 1 cut(s) | 305 |
| TaaI | ACNGT | 4 cut(s) | 141, 146, 355, 393 |
| TasI | AATT | 5 cut(s) | 122, 159, 272, 375, 449 |
| TfiI | GAWTC | 3 cut(s) | 47, 152, 250 |
| Tru1I | TTAA | 2 cut(s) | 158, 374 |
| Tru9I | TTAA | 2 cut(s) | 158, 374 |
| TscAI | CASTG | 2 cut(s) | 345, 606 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| TseI | GCWGC | 1 cut(s) | 431 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 1 cut(s) | 285 |
| TspRI | CASTG | 2 cut(s) | 345, 606 |
| VpaK11BI | GGWCC | 1 cut(s) | 351 |
| VspI | ATTAAT | 1 cut(s) | 374 |