Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 224 - 249 | 6.7e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1938 |
| Acc36I | ACCTGC | 1 cut(s) | 1234 |
| Acc65I | GGTACC | 2 cut(s) | 1006, 1132 |
| AccB1I | GGYRCC | 4 cut(s) | 364, 1006, 1132, 1360 |
| AccI | GTMKAC | 1 cut(s) | 2047 |
| AccII | CGCG | 1 cut(s) | 2002 |
| AccIII | TCCGGA | 1 cut(s) | 656 |
| AclWI | GGATC | 5 cut(s) | 348, 416, 521, 608, 760 |
| AcsI | RAATTY | 3 cut(s) | 1171, 1519, 1708 |
| AcuI | CTGAAG | 2 cut(s) | 365, 1341 |
| AcyI | GRCGYC | 1 cut(s) | 365 |
| AflIII | ACRYGT | 1 cut(s) | 1545 |
| AgeI | ACCGGT | 1 cut(s) | 270 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 288 |
| AjnI | CCWGG | 2 cut(s) | 5, 640 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 799, 831 |
| Alw21I | GWGCWC | 2 cut(s) | 2008, 2101 |
| Alw26I | GTCTC | 5 cut(s) | 159, 279, 439, 465, 986 |
| Alw44I | GTGCAC | 1 cut(s) | 2004 |
| AlwI | GGATC | 5 cut(s) | 348, 416, 521, 608, 760 |
| Aor13HI | TCCGGA | 1 cut(s) | 656 |
| AoxI | GGCC | 5 cut(s) | 883, 1164, 1410, 1436, 2133 |
| ApaLI | GTGCAC | 1 cut(s) | 2004 |
| ApeKI | GCWGC | 3 cut(s) | 564, 567, 1229 |
| ApoI | RAATTY | 3 cut(s) | 1171, 1519, 1708 |
| AsiGI | ACCGGT | 1 cut(s) | 270 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| Asp718I | GGTACC | 2 cut(s) | 1006, 1132 |
| AspLEI | GCGC | 3 cut(s) | 367, 1240, 1939 |
| AspS9I | GGNCC | 4 cut(s) | 654, 1410, 2123, 2134 |
| AsuC2I | CCSGG | 2 cut(s) | 263, 2092 |
| AsuHPI | GGTGA | 7 cut(s) | 38, 530, 749, 773, 1547, 1736, 2077 |
| AvaII | GGWCC | 2 cut(s) | 654, 2123 |
| BaeGI | GKGCMC | 1 cut(s) | 2008 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1116, 1149 |
| BanI | GGYRCC | 4 cut(s) | 364, 1006, 1132, 1360 |
| BanII | GRGCYC | 1 cut(s) | 263 |
| BauI | CACGAG | 2 cut(s) | 1233, 2060 |
| Bbv12I | GWGCWC | 2 cut(s) | 2008, 2101 |
| BbvI | GCAGC | 3 cut(s) | 554, 576, 1216 |
| BccI | CCATC | 7 cut(s) | 26, 404, 841, 1019, 1714, 2113, 2145 |
| BceAI | ACGGC | 2 cut(s) | 1176, 1397 |
| BciT130I | CCWGG | 2 cut(s) | 7, 642 |
| BcnI | CCSGG | 2 cut(s) | 263, 2092 |
| BcoDI | GTCTC | 5 cut(s) | 159, 279, 439, 465, 986 |
| BfaI | CTAG | 4 cut(s) | 957, 1430, 1818, 1887 |
| BfoI | RGCGCY | 1 cut(s) | 368 |
| BfuAI | ACCTGC | 1 cut(s) | 1234 |
| BglII | AGATCT | 1 cut(s) | 953 |
| BisI | GCNGC | 5 cut(s) | 565, 568, 648, 1164, 1230 |
| BlsI | GCNGC | 5 cut(s) | 566, 569, 649, 1165, 1231 |
| Bme1390I | CCNGG | 4 cut(s) | 7, 263, 642, 2092 |
| Bme18I | GGWCC | 2 cut(s) | 654, 2123 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 4 cut(s) | 654, 1410, 2123, 2134 |
| BmiI | GGNNCC | 6 cut(s) | 366, 1008, 1134, 1362, 2076, 2124 |
| BmrFI | CCNGG | 4 cut(s) | 7, 263, 642, 2092 |
| BmrI | ACTGGG | 1 cut(s) | 2018 |
| BmsI | GCATC | 4 cut(s) | 46, 106, 244, 764 |
| BmuI | ACTGGG | 1 cut(s) | 2018 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1093 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 679, 711, 1046, 1078 |
| BpmI | CTGGAG | 3 cut(s) | 698, 885, 909 |
| Bpu10I | CCTNAGC | 1 cut(s) | 571 |
| BpuEI | CTTGAG | 1 cut(s) | 640 |
| BpuMI | CCSGG | 2 cut(s) | 263, 2092 |
| Bsa29I | ATCGAT | 1 cut(s) | 603 |
| BsaAI | YACGTR | 3 cut(s) | 1542, 1605, 1668 |
| BsaBI | GATNNNNATC | 1 cut(s) | 605 |
| BsaHI | GRCGYC | 1 cut(s) | 365 |
| BsaI | GGTCTC | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 2 cut(s) | 368, 641 |
| BsaWI | WCCGGW | 4 cut(s) | 270, 656, 988, 2125 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 983, 1013, 1484, 1514, 1547, 1577, 1982, 2012 |
| Bse118I | RCCGGY | 2 cut(s) | 270, 1192 |
| Bse1I | ACTGG | 2 cut(s) | 508, 2013 |
| Bse8I | GATNNNNATC | 1 cut(s) | 605 |
| BseAI | TCCGGA | 1 cut(s) | 656 |
| BseBI | CCWGG | 2 cut(s) | 7, 642 |
| BseCI | ATCGAT | 1 cut(s) | 603 |
| BseDI | CCNNGG | 2 cut(s) | 368, 641 |
| BseGI | GGATG | 9 cut(s) | 121, 499, 1117, 1454, 1479, 1521, 1584, 1647, 1773 |
| BseJI | GATNNNNATC | 1 cut(s) | 605 |
| BseMII | CTCAG | 3 cut(s) | 1010, 1053, 1473 |
| BseNI | ACTGG | 2 cut(s) | 508, 2013 |
| BseSI | GKGCMC | 1 cut(s) | 2008 |
| BseXI | GCAGC | 3 cut(s) | 554, 576, 1216 |
| BsgI | GTGCAG | 1 cut(s) | 1215 |
| Bsh1236I | CGCG | 1 cut(s) | 2002 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1097 |
| BshFI | GGCC | 5 cut(s) | 885, 1166, 1412, 1438, 2135 |
| BshNI | GGYRCC | 4 cut(s) | 364, 1006, 1132, 1360 |
| BshTI | ACCGGT | 1 cut(s) | 270 |
| BshVI | ATCGAT | 1 cut(s) | 603 |
| BsiEI | CGRYCG | 1 cut(s) | 1097 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2008, 2101 |
| BsiSI | CCGG | 7 cut(s) | 263, 271, 657, 989, 1193, 2091, 2126 |
| BsiWI | CGTACG | 1 cut(s) | 209 |
| BslFI | GGGAC | 4 cut(s) | 514, 886, 1049, 1979 |
| BsmAI | GTCTC | 5 cut(s) | 159, 279, 439, 465, 986 |
| BsmFI | GGGAC | 4 cut(s) | 514, 886, 1049, 1979 |
| BsmI | GAATGC | 5 cut(s) | 388, 802, 836, 1151, 1222 |
| BsnI | GGCC | 5 cut(s) | 885, 1166, 1412, 1438, 2135 |
| Bso31I | GGTCTC | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 3 cut(s) | 263, 2008, 2101 |
| Bsp13I | TCCGGA | 1 cut(s) | 656 |
| Bsp1407I | TGTACA | 1 cut(s) | 486 |
| Bsp143I | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| BspANI | GGCC | 5 cut(s) | 885, 1166, 1412, 1438, 2135 |
| BspCNI | CTCAG | 3 cut(s) | 1009, 1052, 1474 |
| BspDI | ATCGAT | 1 cut(s) | 603 |
| BspEI | TCCGGA | 1 cut(s) | 656 |
| BspFNI | CGCG | 1 cut(s) | 2002 |
| BspLI | GGNNCC | 6 cut(s) | 366, 1008, 1134, 1362, 2076, 2124 |
| BspMI | ACCTGC | 1 cut(s) | 1234 |
| BspPI | GGATC | 5 cut(s) | 348, 416, 521, 608, 760 |
| BspT107I | GGYRCC | 4 cut(s) | 364, 1006, 1132, 1360 |
| BspTNI | GGTCTC | 1 cut(s) | 279 |
| BsrFI | RCCGGY | 2 cut(s) | 270, 1192 |
| BsrGI | TGTACA | 1 cut(s) | 486 |
| BsrI | ACTGG | 2 cut(s) | 508, 2013 |
| BssAI | RCCGGY | 2 cut(s) | 270, 1192 |
| BssECI | CCNNGG | 2 cut(s) | 368, 641 |
| BssMI | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| BssNI | GRCGYC | 1 cut(s) | 365 |
| BssSI | CACGAG | 2 cut(s) | 1233, 2060 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst2BI | CACGAG | 2 cut(s) | 1233, 2060 |
| Bst2UI | CCWGG | 2 cut(s) | 7, 642 |
| Bst4CI | ACNGT | 7 cut(s) | 204, 286, 792, 1095, 1277, 1593, 2116 |
| Bst6I | CTCTTC | 1 cut(s) | 1047 |
| BstACI | GRCGYC | 1 cut(s) | 365 |
| BstAUI | TGTACA | 1 cut(s) | 486 |
| BstBAI | YACGTR | 3 cut(s) | 1542, 1605, 1668 |
| BstDEI | CTNAG | 7 cut(s) | 571, 749, 996, 1039, 1377, 1482, 2070 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1871 |
| BstF5I | GGATG | 9 cut(s) | 121, 499, 1117, 1454, 1479, 1521, 1584, 1647, 1773 |
| BstFNI | CGCG | 1 cut(s) | 2002 |
| BstH2I | RGCGCY | 1 cut(s) | 368 |
| BstHHI | GCGC | 3 cut(s) | 367, 1240, 1939 |
| BstKTI | GATC | 7 cut(s) | 343, 424, 516, 603, 676, 768, 956 |
| BstMAI | GTCTC | 5 cut(s) | 159, 279, 439, 465, 986 |
| BstMBI | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| BstMCI | CGRYCG | 1 cut(s) | 1097 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 392, 1217, 1226, 1235, 1435, 1863 |
| BstNI | CCWGG | 2 cut(s) | 7, 642 |
| BstNSI | RCATGY | 7 cut(s) | 1549, 1612, 1675, 1738, 1801, 1866, 1937 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1093 |
| BstSCI | CCNGG | 4 cut(s) | 5, 261, 640, 2090 |
| BstSLI | GKGCMC | 1 cut(s) | 2008 |
| BstSNI | TACGTA | 1 cut(s) | 1542 |
| BstUI | CGCG | 1 cut(s) | 2002 |
| BstV1I | GCAGC | 3 cut(s) | 554, 576, 1216 |
| BstX2I | RGATCY | 3 cut(s) | 340, 765, 953 |
| BstYI | RGATCY | 3 cut(s) | 340, 765, 953 |
| Bsu15I | ATCGAT | 1 cut(s) | 603 |
| BsuRI | GGCC | 5 cut(s) | 885, 1166, 1412, 1438, 2135 |
| BsuTUI | ATCGAT | 1 cut(s) | 603 |
| BtsCI | GGATG | 9 cut(s) | 121, 499, 1117, 1454, 1479, 1521, 1584, 1647, 1773 |
| BtsIMutI | CAGTG | 2 cut(s) | 1282, 2006 |
| BveI | ACCTGC | 1 cut(s) | 1234 |
| CfoI | GCGC | 3 cut(s) | 367, 1240, 1939 |
| Cfr10I | RCCGGY | 2 cut(s) | 270, 1192 |
| Cfr13I | GGNCC | 4 cut(s) | 654, 1410, 2123, 2134 |
| ClaI | ATCGAT | 1 cut(s) | 603 |
| CseI | GACGC | 3 cut(s) | 1375, 1812, 2096 |
| CspAI | ACCGGT | 1 cut(s) | 270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1321, 1356 |
| DdeI | CTNAG | 7 cut(s) | 571, 749, 996, 1039, 1377, 1482, 2070 |
| DinI | GGCGCC | 1 cut(s) | 366 |
| DpnI | GATC | 7 cut(s) | 342, 423, 515, 602, 675, 767, 955 |
| DpnII | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| DraI | TTTAAA | 3 cut(s) | 1716, 1839, 1848 |
| DriI | GACNNNNNGTC | 1 cut(s) | 288 |
| Eam1104I | CTCTTC | 1 cut(s) | 1047 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 1047 |
| EciI | GGCGGA | 1 cut(s) | 128 |
| Eco105I | TACGTA | 1 cut(s) | 1542 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco147I | AGGCCT | 1 cut(s) | 1438 |
| Eco24I | GRGCYC | 1 cut(s) | 263 |
| Eco31I | GGTCTC | 1 cut(s) | 279 |
| Eco32I | GATATC | 1 cut(s) | 607 |
| Eco47I | GGWCC | 2 cut(s) | 654, 2123 |
| Eco57I | CTGAAG | 2 cut(s) | 365, 1341 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1871 |
| EcoRI | GAATTC | 3 cut(s) | 1171, 1519, 1708 |
| EcoRII | CCWGG | 2 cut(s) | 5, 640 |
| EcoRV | GATATC | 1 cut(s) | 607 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| EcoT22I | ATGCAT | 6 cut(s) | 1464, 1614, 1677, 1740, 1799, 1803 |
| EcoT38I | GRGCYC | 1 cut(s) | 263 |
| EgeI | GGCGCC | 1 cut(s) | 366 |
| EheI | GGCGCC | 1 cut(s) | 366 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 352, 384 |
| FaqI | GGGAC | 4 cut(s) | 514, 886, 1049, 1979 |
| FauI | CCCGC | 2 cut(s) | 1312, 1401 |
| FblI | GTMKAC | 1 cut(s) | 2047 |
| Fnu4HI | GCNGC | 5 cut(s) | 565, 568, 648, 1164, 1230 |
| FokI | GGATG | 9 cut(s) | 128, 506, 1124, 1441, 1486, 1528, 1591, 1654, 1780 |
| FriOI | GRGCYC | 1 cut(s) | 263 |
| Fsp4HI | GCNGC | 5 cut(s) | 565, 568, 648, 1164, 1230 |
| FspAI | RTGCGCAY | 1 cut(s) | 1938 |
| FspBI | CTAG | 4 cut(s) | 957, 1430, 1818, 1887 |
| FspI | TGCGCA | 1 cut(s) | 1938 |
| GlaI | GCGC | 3 cut(s) | 366, 1239, 1938 |
| GluI | GCNGC | 5 cut(s) | 565, 568, 648, 1164, 1230 |
| GsuI | CTGGAG | 3 cut(s) | 698, 885, 909 |
| HaeII | RGCGCY | 1 cut(s) | 368 |
| HaeIII | GGCC | 5 cut(s) | 885, 1166, 1412, 1438, 2135 |
| HapII | CCGG | 7 cut(s) | 263, 271, 657, 989, 1193, 2091, 2126 |
| HgaI | GACGC | 3 cut(s) | 1375, 1812, 2096 |
| HhaI | GCGC | 3 cut(s) | 367, 1240, 1939 |
| Hin1I | GRCGYC | 1 cut(s) | 365 |
| Hin6I | GCGC | 3 cut(s) | 365, 1238, 1937 |
| HinP1I | GCGC | 3 cut(s) | 365, 1238, 1937 |
| HincII | GTYRAC | 6 cut(s) | 268, 282, 1273, 1282, 1327, 2048 |
| HindII | GTYRAC | 6 cut(s) | 268, 282, 1273, 1282, 1327, 2048 |
| HindIII | AAGCTT | 2 cut(s) | 95, 1978 |
| HpaI | GTTAAC | 1 cut(s) | 1327 |
| HpaII | CCGG | 7 cut(s) | 263, 271, 657, 989, 1193, 2091, 2126 |
| HphI | GGTGA | 7 cut(s) | 38, 530, 749, 773, 1547, 1736, 2077 |
| Hpy166II | GTNNAC | 8 cut(s) | 268, 282, 1273, 1282, 1327, 1928, 2006, 2048 |
| Hpy188III | TCNNGA | 8 cut(s) | 251, 657, 677, 864, 926, 957, 1442, 2141 |
| Hpy8I | GTNNAC | 8 cut(s) | 268, 282, 1273, 1282, 1327, 1928, 2006, 2048 |
| Hpy99I | CGWCG | 2 cut(s) | 1095, 1369 |
| HpyAV | CCTTC | 4 cut(s) | 896, 1612, 1675, 1916 |
| HpyCH4III | ACNGT | 7 cut(s) | 204, 286, 792, 1095, 1277, 1593, 2116 |
| HpyCH4IV | ACGT | 5 cut(s) | 333, 901, 1541, 1604, 1667 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 392, 1217, 1226, 1235, 1435, 1863 |
| HpyF3I | CTNAG | 7 cut(s) | 571, 749, 996, 1039, 1377, 1482, 2070 |
| HpySE526I | ACGT | 5 cut(s) | 333, 901, 1541, 1604, 1667 |
| Hsp92I | GRCGYC | 1 cut(s) | 365 |
| HspAI | GCGC | 3 cut(s) | 365, 1238, 1937 |
| KasI | GGCGCC | 1 cut(s) | 364 |
| Kpn2I | TCCGGA | 1 cut(s) | 656 |
| KpnI | GGTACC | 2 cut(s) | 1010, 1136 |
| KroI | GCCGGC | 1 cut(s) | 1192 |
| KroNI | GCCGGC | 1 cut(s) | 1194 |
| KspAI | GTTAAC | 1 cut(s) | 1327 |
| Kzo9I | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| LmnI | GCTCC | 1 cut(s) | 928 |
| Lsp1109I | GCAGC | 3 cut(s) | 554, 576, 1216 |
| LweI | GCATC | 4 cut(s) | 46, 106, 244, 764 |
| MaeI | CTAG | 4 cut(s) | 957, 1430, 1818, 1887 |
| MaeII | ACGT | 5 cut(s) | 333, 901, 1541, 1604, 1667 |
| MaeIII | GTNAC | 5 cut(s) | 43, 355, 403, 1600, 2065 |
| MalI | GATC | 7 cut(s) | 342, 423, 515, 602, 675, 767, 955 |
| MboI | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| MboII | GAAGA | 5 cut(s) | 163, 208, 1034, 1064, 1921 |
| MflI | RGATCY | 3 cut(s) | 340, 765, 953 |
| MhlI | GDGCHC | 3 cut(s) | 263, 2008, 2101 |
| MluCI | AATT | 8 cut(s) | 294, 449, 948, 1171, 1347, 1519, 1708, 1949 |
| Mly113I | GGCGCC | 1 cut(s) | 365 |
| MlyI | GAGTC | 6 cut(s) | 868, 988, 1031, 1064, 1275, 1408 |
| MmeI | TCCRAC | 4 cut(s) | 160, 890, 959, 1277 |
| Mph1103I | ATGCAT | 6 cut(s) | 1464, 1614, 1677, 1740, 1799, 1803 |
| MroI | TCCGGA | 1 cut(s) | 656 |
| MroNI | GCCGGC | 1 cut(s) | 1192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1938 |
| MspA1I | CMGCKG | 4 cut(s) | 567, 1184, 1307, 1319 |
| MspI | CCGG | 7 cut(s) | 263, 271, 657, 989, 1193, 2091, 2126 |
| MspR9I | CCNGG | 4 cut(s) | 7, 263, 642, 2092 |
| Mva1269I | GAATGC | 5 cut(s) | 388, 802, 836, 1151, 1222 |
| MvaI | CCWGG | 2 cut(s) | 7, 642 |
| MvnI | CGCG | 1 cut(s) | 2002 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 392, 1217, 1226, 1235, 1435, 1863 |
| NaeI | GCCGGC | 1 cut(s) | 1194 |
| NarI | GGCGCC | 1 cut(s) | 365 |
| NciI | CCSGG | 2 cut(s) | 263, 2092 |
| NdeII | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| NgoMIV | GCCGGC | 1 cut(s) | 1192 |
| NlaIV | GGNNCC | 6 cut(s) | 366, 1008, 1134, 1362, 2076, 2124 |
| NmuCI | GTSAC | 2 cut(s) | 43, 2065 |
| NsbI | TGCGCA | 1 cut(s) | 1938 |
| NsiI | ATGCAT | 6 cut(s) | 1464, 1614, 1677, 1740, 1799, 1803 |
| NspI | RCATGY | 7 cut(s) | 1549, 1612, 1675, 1738, 1801, 1866, 1937 |
| PaeI | GCATGC | 4 cut(s) | 1612, 1675, 1801, 1937 |
| PceI | AGGCCT | 1 cut(s) | 1438 |
| PciI | ACATGT | 1 cut(s) | 1545 |
| PctI | GAATGC | 5 cut(s) | 388, 802, 836, 1151, 1222 |
| PdiI | GCCGGC | 1 cut(s) | 1194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 5 cut(s) | 215, 247, 460, 1451, 1912 |
| Pfl23II | CGTACG | 1 cut(s) | 209 |
| PflFI | GACNNNGTC | 1 cut(s) | 997 |
| PinAI | ACCGGT | 1 cut(s) | 270 |
| PkrI | GCNGC | 5 cut(s) | 566, 569, 649, 1165, 1231 |
| PleI | GAGTC | 6 cut(s) | 868, 988, 1031, 1063, 1274, 1407 |
| PluTI | GGCGCC | 1 cut(s) | 368 |
| PpsI | GAGTC | 6 cut(s) | 868, 988, 1031, 1063, 1274, 1407 |
| Ppu21I | YACGTR | 3 cut(s) | 1542, 1605, 1668 |
| PscI | ACATGT | 1 cut(s) | 1545 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1093 |
| Psp6I | CCWGG | 2 cut(s) | 5, 640 |
| PspGI | CCWGG | 2 cut(s) | 5, 640 |
| PspLI | CGTACG | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 6 cut(s) | 366, 1008, 1134, 1362, 2076, 2124 |
| PspPI | GGNCC | 4 cut(s) | 654, 1410, 2123, 2134 |
| PsuI | RGATCY | 3 cut(s) | 340, 765, 953 |
| PsyI | GACNNNGTC | 1 cut(s) | 997 |
| PvuII | CAGCTG | 2 cut(s) | 567, 1319 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1938 |
| SalI | GTCGAC | 1 cut(s) | 2046 |
| SatI | GCNGC | 5 cut(s) | 565, 568, 648, 1164, 1230 |
| Sau3AI | GATC | 7 cut(s) | 340, 421, 513, 600, 673, 765, 953 |
| Sau96I | GGNCC | 4 cut(s) | 654, 1410, 2123, 2134 |
| SchI | GAGTC | 6 cut(s) | 868, 988, 1031, 1064, 1275, 1408 |
| ScrFI | CCNGG | 4 cut(s) | 7, 263, 642, 2092 |
| SduI | GDGCHC | 3 cut(s) | 263, 2008, 2101 |
| SfaNI | GCATC | 4 cut(s) | 46, 106, 244, 764 |
| SfoI | GGCGCC | 1 cut(s) | 366 |
| SinI | GGWCC | 2 cut(s) | 654, 2123 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1938 |
| SmlI | CTYRAG | 1 cut(s) | 619 |
| SmoI | CTYRAG | 1 cut(s) | 619 |
| SnaBI | TACGTA | 1 cut(s) | 1542 |
| SphI | GCATGC | 4 cut(s) | 1612, 1675, 1801, 1937 |
| Sse9I | AATT | 8 cut(s) | 294, 449, 948, 1171, 1347, 1519, 1708, 1949 |
| SseBI | AGGCCT | 1 cut(s) | 1438 |
| SspDI | GGCGCC | 1 cut(s) | 364 |
| SspMI | CTAG | 4 cut(s) | 957, 1430, 1818, 1887 |
| StuI | AGGCCT | 1 cut(s) | 1438 |
| StyD4I | CCNGG | 4 cut(s) | 5, 261, 640, 2090 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 7 cut(s) | 204, 286, 792, 1095, 1277, 1593, 2116 |
| TaiI | ACGT | 5 cut(s) | 336, 904, 1544, 1607, 1670 |
| TaqI | TCGA | 3 cut(s) | 603, 1175, 2047 |
| TasI | AATT | 8 cut(s) | 294, 449, 948, 1171, 1347, 1519, 1708, 1949 |
| TatI | WGTACW | 3 cut(s) | 305, 486, 787 |
| TauI | GCSGC | 2 cut(s) | 650, 1166 |
| TfiI | GAWTC | 5 cut(s) | 215, 247, 460, 1451, 1912 |
| TscAI | CASTG | 2 cut(s) | 1282, 2013 |
| TseFI | GTSAC | 2 cut(s) | 43, 2065 |
| TseI | GCWGC | 3 cut(s) | 564, 567, 1229 |
| Tsp45I | GTSAC | 2 cut(s) | 43, 2065 |
| TspDTI | ATGAA | 8 cut(s) | 878, 1443, 1512, 1532, 1575, 1638, 1782, 1904 |
| TspGWI | ACGGA | 5 cut(s) | 197, 227, 575, 1142, 1166 |
| TspRI | CASTG | 2 cut(s) | 1282, 2013 |
| Tth111I | GACNNNGTC | 1 cut(s) | 997 |
| VneI | GTGCAC | 1 cut(s) | 2004 |
| VpaK11BI | GGWCC | 2 cut(s) | 654, 2123 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1871 |
| XapI | RAATTY | 3 cut(s) | 1171, 1519, 1708 |
| XbaI | TCTAGA | 1 cut(s) | 956 |
| XceI | RCATGY | 7 cut(s) | 1549, 1612, 1675, 1738, 1801, 1866, 1937 |
| XmiI | GTMKAC | 1 cut(s) | 2047 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| XspI | CTAG | 4 cut(s) | 957, 1430, 1818, 1887 |
| Zsp2I | ATGCAT | 6 cut(s) | 1464, 1614, 1677, 1740, 1799, 1803 |