ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 172 - 219 | 1.3e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 955 |
| AccB1I | GGYRCC | 2 cut(s) | 793, 988 |
| AciI | CCGC | 3 cut(s) | 89, 410, 1121 |
| AclWI | GGATC | 1 cut(s) | 340 |
| AcoI | YGGCCR | 2 cut(s) | 16, 418 |
| AcsI | RAATTY | 2 cut(s) | 378, 934 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AcyI | GRCGYC | 2 cut(s) | 952, 1124 |
| AfaI | GTAC | 3 cut(s) | 375, 869, 1177 |
| AfeI | AGCGCT | 1 cut(s) | 539 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 202, 909, 924 |
| AflII | CTTAAG | 2 cut(s) | 268, 1190 |
| AflIII | ACRYGT | 1 cut(s) | 519 |
| AgeI | ACCGGT | 1 cut(s) | 924 |
| AgsI | TTSAA | 8 cut(s) | 236, 526, 641, 736, 790, 876, 939, 1459 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 928 |
| AjiI | CACGTC | 1 cut(s) | 520 |
| AjnI | CCWGG | 4 cut(s) | 855, 1076, 1170, 1363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 66, 98 |
| AluBI | AGCT | 7 cut(s) | 132, 251, 299, 473, 550, 779, 974 |
| AluI | AGCT | 7 cut(s) | 132, 251, 299, 473, 550, 779, 974 |
| Alw21I | GWGCWC | 1 cut(s) | 134 |
| Alw26I | GTCTC | 5 cut(s) | 244, 392, 820, 943, 1108 |
| AlwI | GGATC | 1 cut(s) | 340 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 983 |
| Aor51HI | AGCGCT | 1 cut(s) | 539 |
| AoxI | GGCC | 5 cut(s) | 16, 193, 277, 418, 442 |
| ApeKI | GCWGC | 1 cut(s) | 157 |
| ApoI | RAATTY | 2 cut(s) | 378, 934 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 370, 402, 937, 969 |
| AseI | ATTAAT | 1 cut(s) | 1280 |
| AsiGI | ACCGGT | 1 cut(s) | 924 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 597 |
| AspA2I | CCTAGG | 1 cut(s) | 439 |
| AspLEI | GCGC | 1 cut(s) | 540 |
| AspS9I | GGNCC | 5 cut(s) | 124, 278, 332, 725, 922 |
| AsuC2I | CCSGG | 3 cut(s) | 395, 919, 1477 |
| AsuHPI | GGTGA | 4 cut(s) | 479, 617, 893, 1328 |
| AsuII | TTCGAA | 1 cut(s) | 846 |
| AvaII | GGWCC | 4 cut(s) | 124, 332, 725, 922 |
| AvrII | CCTAGG | 1 cut(s) | 439 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanI | GGYRCC | 2 cut(s) | 793, 988 |
| BanII | GRGCYC | 1 cut(s) | 134 |
| BbsI | GAAGAC | 2 cut(s) | 1447, 1483 |
| Bbv12I | GWGCWC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 2 cut(s) | 1283, 1439 |
| BceAI | ACGGC | 1 cut(s) | 3 |
| BciT130I | CCWGG | 4 cut(s) | 857, 1078, 1172, 1365 |
| BclI | TGATCA | 1 cut(s) | 631 |
| BcnI | CCSGG | 3 cut(s) | 395, 919, 1477 |
| BcoDI | GTCTC | 5 cut(s) | 244, 392, 820, 943, 1108 |
| BfaI | CTAG | 5 cut(s) | 440, 819, 828, 1065, 1389 |
| BfmI | CTRYAG | 1 cut(s) | 975 |
| BfoI | RGCGCY | 1 cut(s) | 541 |
| BfrI | CTTAAG | 2 cut(s) | 268, 1190 |
| BglII | AGATCT | 1 cut(s) | 1011 |
| BisI | GCNGC | 3 cut(s) | 90, 158, 1122 |
| BlnI | CCTAGG | 1 cut(s) | 439 |
| BlsI | GCNGC | 3 cut(s) | 91, 159, 1123 |
| BmcAI | AGTACT | 1 cut(s) | 869 |
| Bme1390I | CCNGG | 7 cut(s) | 395, 857, 919, 1078, 1172, 1365, 1477 |
| Bme18I | GGWCC | 4 cut(s) | 124, 332, 725, 922 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 928 |
| BmgBI | CACGTC | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 5 cut(s) | 124, 278, 332, 725, 922 |
| BmiI | GGNNCC | 5 cut(s) | 333, 334, 795, 923, 990 |
| BmrFI | CCNGG | 7 cut(s) | 395, 857, 919, 1078, 1172, 1365, 1477 |
| BmrI | ACTGGG | 1 cut(s) | 1330 |
| BmsI | GCATC | 3 cut(s) | 307, 425, 1063 |
| BmuI | ACTGGG | 1 cut(s) | 1330 |
| BpiI | GAAGAC | 2 cut(s) | 1447, 1483 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1240, 1272 |
| BpmI | CTGGAG | 1 cut(s) | 1386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 128 |
| Bpu14I | TTCGAA | 1 cut(s) | 846 |
| BpuEI | CTTGAG | 2 cut(s) | 146, 1242 |
| BpuMI | CCSGG | 3 cut(s) | 395, 919, 1477 |
| BsaHI | GRCGYC | 2 cut(s) | 952, 1124 |
| BsaI | GGTCTC | 1 cut(s) | 392 |
| BsaJI | CCNNGG | 7 cut(s) | 281, 439, 918, 1077, 1171, 1363, 1476 |
| BsaWI | WCCGGW | 2 cut(s) | 796, 924 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1403, 1433 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 202, 909, 924 |
| Bse118I | RCCGGY | 1 cut(s) | 924 |
| Bse1I | ACTGG | 3 cut(s) | 364, 883, 1325 |
| BseBI | CCWGG | 4 cut(s) | 857, 1078, 1172, 1365 |
| BseDI | CCNNGG | 7 cut(s) | 281, 439, 918, 1077, 1171, 1363, 1476 |
| BseGI | GGATG | 2 cut(s) | 418, 1294 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 202, 909, 924 |
| BseMII | CTCAG | 2 cut(s) | 119, 975 |
| BseNI | ACTGG | 3 cut(s) | 364, 883, 1325 |
| BseRI | GAGGAG | 2 cut(s) | 232, 1424 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BseYI | CCCAGC | 2 cut(s) | 473, 1485 |
| BshFI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| BshNI | GGYRCC | 2 cut(s) | 793, 988 |
| BshTI | ACCGGT | 1 cut(s) | 924 |
| BsiHKAI | GWGCWC | 1 cut(s) | 134 |
| BsiSI | CCGG | 5 cut(s) | 395, 797, 918, 925, 1476 |
| BslFI | GGGAC | 2 cut(s) | 318, 935 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 202, 909, 924 |
| BsmAI | GTCTC | 5 cut(s) | 244, 392, 820, 943, 1108 |
| BsmBI | CGTCTC | 1 cut(s) | 943 |
| BsmFI | GGGAC | 2 cut(s) | 318, 935 |
| BsnI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| Bso31I | GGTCTC | 1 cut(s) | 392 |
| Bsp119I | TTCGAA | 1 cut(s) | 846 |
| Bsp1286I | GDGCHC | 1 cut(s) | 134 |
| Bsp143I | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| BspACI | CCGC | 3 cut(s) | 89, 410, 1121 |
| BspANI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| BspCNI | CTCAG | 2 cut(s) | 120, 976 |
| BspHI | TCATGA | 2 cut(s) | 862, 1429 |
| BspLI | GGNNCC | 5 cut(s) | 333, 334, 795, 923, 990 |
| BspPI | GGATC | 1 cut(s) | 340 |
| BspT104I | TTCGAA | 1 cut(s) | 846 |
| BspT107I | GGYRCC | 2 cut(s) | 793, 988 |
| BspTI | CTTAAG | 2 cut(s) | 268, 1190 |
| BspTNI | GGTCTC | 1 cut(s) | 392 |
| BsrFI | RCCGGY | 1 cut(s) | 924 |
| BsrI | ACTGG | 3 cut(s) | 364, 883, 1325 |
| BssAI | RCCGGY | 1 cut(s) | 924 |
| BssECI | CCNNGG | 7 cut(s) | 281, 439, 918, 1077, 1171, 1363, 1476 |
| BssMI | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| BssNI | GRCGYC | 2 cut(s) | 952, 1124 |
| BssT1I | CCWWGG | 2 cut(s) | 281, 439 |
| Bst2UI | CCWGG | 4 cut(s) | 857, 1078, 1172, 1365 |
| Bst4CI | ACNGT | 3 cut(s) | 756, 872, 979 |
| Bst6I | CTCTTC | 1 cut(s) | 1332 |
| BstACI | GRCGYC | 2 cut(s) | 952, 1124 |
| BstAFI | CTTAAG | 2 cut(s) | 268, 1190 |
| BstBI | TTCGAA | 1 cut(s) | 846 |
| BstC8I | GCNNGC | 1 cut(s) | 312 |
| BstDEI | CTNAG | 4 cut(s) | 10, 128, 707, 984 |
| BstEII | GGTNACC | 1 cut(s) | 623 |
| BstF5I | GGATG | 2 cut(s) | 418, 1294 |
| BstH2I | RGCGCY | 1 cut(s) | 541 |
| BstHHI | GCGC | 1 cut(s) | 540 |
| BstKTI | GATC | 6 cut(s) | 82, 348, 463, 634, 1014, 1234 |
| BstMAI | GTCTC | 5 cut(s) | 244, 392, 820, 943, 1108 |
| BstMBI | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 535 |
| BstNI | CCWGG | 4 cut(s) | 857, 1078, 1172, 1365 |
| BstPI | GGTNACC | 1 cut(s) | 623 |
| BstSCI | CCNGG | 7 cut(s) | 393, 855, 917, 1076, 1170, 1363, 1475 |
| BstSFI | CTRYAG | 1 cut(s) | 975 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BstV2I | GAAGAC | 2 cut(s) | 1447, 1483 |
| BstX2I | RGATCY | 1 cut(s) | 1011 |
| BstYI | RGATCY | 1 cut(s) | 1011 |
| BsuRI | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| BtrI | CACGTC | 1 cut(s) | 520 |
| BtsCI | GGATG | 2 cut(s) | 418, 1294 |
| Cac8I | GCNNGC | 1 cut(s) | 312 |
| CaiI | CAGNNNCTG | 1 cut(s) | 983 |
| CciI | TCATGA | 2 cut(s) | 862, 1429 |
| CfoI | GCGC | 1 cut(s) | 540 |
| Cfr10I | RCCGGY | 1 cut(s) | 924 |
| Cfr13I | GGNCC | 5 cut(s) | 124, 278, 332, 725, 922 |
| CseI | GACGC | 1 cut(s) | 1113 |
| CsiI | ACCWGGT | 1 cut(s) | 855 |
| Csp6I | GTAC | 3 cut(s) | 374, 868, 1176 |
| CspAI | ACCGGT | 1 cut(s) | 924 |
| CviAII | CATG | 6 cut(s) | 383, 719, 863, 1002, 1164, 1430 |
| CviQI | GTAC | 3 cut(s) | 374, 868, 1176 |
| DdeI | CTNAG | 4 cut(s) | 10, 128, 707, 984 |
| DpnI | GATC | 6 cut(s) | 81, 347, 462, 633, 1013, 1233 |
| DpnII | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| DraI | TTTAAA | 1 cut(s) | 1401 |
| DriI | GACNNNNNGTC | 1 cut(s) | 928 |
| EaeI | YGGCCR | 2 cut(s) | 16, 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 1332 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 928 |
| EarI | CTCTTC | 1 cut(s) | 1332 |
| Ecl136II | GAGCTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 2 cut(s) | 281, 439 |
| Eco24I | GRGCYC | 1 cut(s) | 134 |
| Eco31I | GGTCTC | 1 cut(s) | 392 |
| Eco47I | GGWCC | 4 cut(s) | 124, 332, 725, 922 |
| Eco47III | AGCGCT | 1 cut(s) | 539 |
| Eco53kI | GAGCTC | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco91I | GGTNACC | 1 cut(s) | 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 132 |
| EcoO109I | RGGNCCY | 2 cut(s) | 332, 725 |
| EcoO65I | GGTNACC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 4 cut(s) | 855, 1076, 1170, 1363 |
| EcoT14I | CCWWGG | 2 cut(s) | 281, 439 |
| EcoT38I | GRGCYC | 1 cut(s) | 134 |
| ErhI | CCWWGG | 2 cut(s) | 281, 439 |
| Esp3I | CGTCTC | 1 cut(s) | 943 |
| FaeI | CATG | 6 cut(s) | 386, 722, 866, 1005, 1167, 1433 |
| FaqI | GGGAC | 2 cut(s) | 318, 935 |
| FatI | CATG | 6 cut(s) | 382, 718, 862, 1001, 1163, 1429 |
| FauNDI | CATATG | 1 cut(s) | 143 |
| FbaI | TGATCA | 1 cut(s) | 631 |
| Fnu4HI | GCNGC | 3 cut(s) | 90, 158, 1122 |
| FokI | GGATG | 2 cut(s) | 425, 1301 |
| FriOI | GRGCYC | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 3 cut(s) | 90, 158, 1122 |
| FspBI | CTAG | 5 cut(s) | 440, 819, 828, 1065, 1389 |
| GlaI | GCGC | 1 cut(s) | 539 |
| GluI | GCNGC | 3 cut(s) | 90, 158, 1122 |
| GsaI | CCCAGC | 2 cut(s) | 477, 1489 |
| GsuI | CTGGAG | 1 cut(s) | 1386 |
| HaeII | RGCGCY | 1 cut(s) | 541 |
| HaeIII | GGCC | 5 cut(s) | 18, 195, 279, 420, 444 |
| HapII | CCGG | 5 cut(s) | 395, 797, 918, 925, 1476 |
| HgaI | GACGC | 1 cut(s) | 1113 |
| HhaI | GCGC | 1 cut(s) | 540 |
| Hin1I | GRCGYC | 2 cut(s) | 952, 1124 |
| Hin1II | CATG | 6 cut(s) | 386, 722, 866, 1005, 1167, 1433 |
| Hin6I | GCGC | 1 cut(s) | 538 |
| HinP1I | GCGC | 1 cut(s) | 538 |
| HincII | GTYRAC | 1 cut(s) | 1350 |
| HindII | GTYRAC | 1 cut(s) | 1350 |
| HinfI | GANTC | 6 cut(s) | 74, 264, 501, 673, 809, 1466 |
| HpaII | CCGG | 5 cut(s) | 395, 797, 918, 925, 1476 |
| HphI | GGTGA | 4 cut(s) | 479, 617, 893, 1328 |
| Hpy166II | GTNNAC | 2 cut(s) | 884, 1350 |
| Hpy188I | TCNGA | 6 cut(s) | 79, 247, 506, 985, 1024, 1113 |
| Hpy188III | TCNNGA | 9 cut(s) | 71, 127, 163, 172, 261, 389, 863, 1034, 1430 |
| Hpy8I | GTNNAC | 2 cut(s) | 884, 1350 |
| Hpy99I | CGWCG | 3 cut(s) | 221, 957, 1129 |
| HpyAV | CCTTC | 6 cut(s) | 178, 206, 635, 716, 784, 1475 |
| HpyCH4III | ACNGT | 3 cut(s) | 756, 872, 979 |
| HpyCH4IV | ACGT | 4 cut(s) | 519, 636, 952, 1452 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 147, 428, 651, 1017, 1277 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 535 |
| HpyF3I | CTNAG | 4 cut(s) | 10, 128, 707, 984 |
| HpySE526I | ACGT | 4 cut(s) | 519, 636, 952, 1452 |
| Hsp92I | GRCGYC | 2 cut(s) | 952, 1124 |
| Hsp92II | CATG | 6 cut(s) | 386, 722, 866, 1005, 1167, 1433 |
| HspAI | GCGC | 1 cut(s) | 538 |
| KflI | GGGWCCC | 1 cut(s) | 332 |
| Ksp22I | TGATCA | 1 cut(s) | 631 |
| Kzo9I | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| LmnI | GCTCC | 1 cut(s) | 1324 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| LweI | GCATC | 3 cut(s) | 307, 425, 1063 |
| MabI | ACCWGGT | 1 cut(s) | 855 |
| MaeI | CTAG | 5 cut(s) | 440, 819, 828, 1065, 1389 |
| MaeII | ACGT | 4 cut(s) | 519, 636, 952, 1452 |
| MaeIII | GTNAC | 4 cut(s) | 623, 1166, 1316, 1391 |
| MalI | GATC | 6 cut(s) | 81, 347, 462, 633, 1013, 1233 |
| MboI | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| MboII | GAAGA | 4 cut(s) | 410, 1349, 1447, 1483 |
| MflI | RGATCY | 1 cut(s) | 1011 |
| MhlI | GDGCHC | 1 cut(s) | 134 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 8 cut(s) | 378, 604, 692, 934, 965, 1201, 1237, 1422 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MlyI | GAGTC | 3 cut(s) | 510, 682, 1475 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MroXI | GAANNNNTTC | 1 cut(s) | 597 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 7 cut(s) | 269, 485, 1191, 1212, 1280, 1344, 1400 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspCI | CTTAAG | 2 cut(s) | 268, 1190 |
| MspI | CCGG | 5 cut(s) | 395, 797, 918, 925, 1476 |
| MspR9I | CCNGG | 7 cut(s) | 395, 857, 919, 1078, 1172, 1365, 1477 |
| MvaI | CCWGG | 4 cut(s) | 857, 1078, 1172, 1365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 535 |
| NciI | CCSGG | 3 cut(s) | 395, 919, 1477 |
| NdeI | CATATG | 1 cut(s) | 143 |
| NdeII | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| NlaIII | CATG | 6 cut(s) | 386, 722, 866, 1005, 1167, 1433 |
| NlaIV | GGNNCC | 5 cut(s) | 333, 334, 795, 923, 990 |
| NmuCI | GTSAC | 2 cut(s) | 623, 1316 |
| NspV | TTCGAA | 1 cut(s) | 846 |
| PagI | TCATGA | 2 cut(s) | 862, 1429 |
| PdmI | GAANNNNTTC | 1 cut(s) | 597 |
| PfeI | GAWTC | 3 cut(s) | 74, 264, 809 |
| PinAI | ACCGGT | 1 cut(s) | 924 |
| PkrI | GCNGC | 3 cut(s) | 91, 159, 1123 |
| PleI | GAGTC | 3 cut(s) | 509, 681, 1474 |
| PpsI | GAGTC | 3 cut(s) | 509, 681, 1474 |
| PpuMI | RGGWCCY | 2 cut(s) | 332, 725 |
| PshBI | ATTAAT | 1 cut(s) | 1280 |
| Psp124BI | GAGCTC | 1 cut(s) | 134 |
| Psp5II | RGGWCCY | 2 cut(s) | 332, 725 |
| Psp6I | CCWGG | 4 cut(s) | 855, 1076, 1170, 1363 |
| PspEI | GGTNACC | 1 cut(s) | 623 |
| PspFI | CCCAGC | 2 cut(s) | 473, 1485 |
| PspGI | CCWGG | 4 cut(s) | 855, 1076, 1170, 1363 |
| PspN4I | GGNNCC | 5 cut(s) | 333, 334, 795, 923, 990 |
| PspPI | GGNCC | 5 cut(s) | 124, 278, 332, 725, 922 |
| PspPPI | RGGWCCY | 2 cut(s) | 332, 725 |
| PstNI | CAGNNNCTG | 1 cut(s) | 983 |
| PsuI | RGATCY | 1 cut(s) | 1011 |
| RsaI | GTAC | 3 cut(s) | 375, 869, 1177 |
| RsaNI | GTAC | 3 cut(s) | 374, 868, 1176 |
| SacI | GAGCTC | 1 cut(s) | 134 |
| SaqAI | TTAA | 7 cut(s) | 269, 485, 1191, 1212, 1280, 1344, 1400 |
| SatI | GCNGC | 3 cut(s) | 90, 158, 1122 |
| Sau3AI | GATC | 6 cut(s) | 79, 345, 460, 631, 1011, 1231 |
| Sau96I | GGNCC | 5 cut(s) | 124, 278, 332, 725, 922 |
| ScaI | AGTACT | 1 cut(s) | 869 |
| SchI | GAGTC | 3 cut(s) | 510, 682, 1475 |
| ScrFI | CCNGG | 7 cut(s) | 395, 857, 919, 1078, 1172, 1365, 1477 |
| SduI | GDGCHC | 1 cut(s) | 134 |
| SexAI | ACCWGGT | 1 cut(s) | 855 |
| SfaNI | GCATC | 3 cut(s) | 307, 425, 1063 |
| SfcI | CTRYAG | 1 cut(s) | 975 |
| SfuI | TTCGAA | 1 cut(s) | 846 |
| SinI | GGWCC | 4 cut(s) | 124, 332, 725, 922 |
| SmlI | CTYRAG | 4 cut(s) | 161, 268, 1190, 1257 |
| SmoI | CTYRAG | 4 cut(s) | 161, 268, 1190, 1257 |
| Sse9I | AATT | 8 cut(s) | 378, 604, 692, 934, 965, 1201, 1237, 1422 |
| SsiI | CCGC | 3 cut(s) | 89, 410, 1121 |
| SspMI | CTAG | 5 cut(s) | 440, 819, 828, 1065, 1389 |
| SstI | GAGCTC | 1 cut(s) | 134 |
| StyD4I | CCNGG | 7 cut(s) | 393, 855, 917, 1076, 1170, 1363, 1475 |
| StyI | CCWWGG | 2 cut(s) | 281, 439 |
| TaaI | ACNGT | 3 cut(s) | 756, 872, 979 |
| TaiI | ACGT | 4 cut(s) | 522, 639, 955, 1455 |
| TaqI | TCGA | 8 cut(s) | 72, 134, 199, 287, 344, 390, 846, 1053 |
| TasI | AATT | 8 cut(s) | 378, 604, 692, 934, 965, 1201, 1237, 1422 |
| TatI | WGTACW | 1 cut(s) | 867 |
| TauI | GCSGC | 2 cut(s) | 92, 1124 |
| TfiI | GAWTC | 3 cut(s) | 74, 264, 809 |
| Tru1I | TTAA | 7 cut(s) | 269, 485, 1191, 1212, 1280, 1344, 1400 |
| Tru9I | TTAA | 7 cut(s) | 269, 485, 1191, 1212, 1280, 1344, 1400 |
| TseFI | GTSAC | 2 cut(s) | 623, 1316 |
| TseI | GCWGC | 1 cut(s) | 157 |
| Tsp45I | GTSAC | 2 cut(s) | 623, 1316 |
| TspDTI | ATGAA | 6 cut(s) | 371, 594, 606, 735, 785, 851 |
| Vha464I | CTTAAG | 2 cut(s) | 268, 1190 |
| VpaK11BI | GGWCC | 4 cut(s) | 124, 332, 725, 922 |
| VspI | ATTAAT | 1 cut(s) | 1280 |
| XapI | RAATTY | 2 cut(s) | 378, 934 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XmaJI | CCTAGG | 1 cut(s) | 439 |
| XmnI | GAANNNNTTC | 1 cut(s) | 597 |
| XspI | CTAG | 5 cut(s) | 440, 819, 828, 1065, 1389 |
| ZraI | GACGTC | 1 cut(s) | 953 |
| ZrmI | AGTACT | 1 cut(s) | 869 |