Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 163 - 210 | 5.1e-10 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 131 |
| Acc65I | GGTACC | 1 cut(s) | 319 |
| AccB1I | GGYRCC | 1 cut(s) | 319 |
| AccI | GTMKAC | 1 cut(s) | 469 |
| AciI | CCGC | 1 cut(s) | 113 |
| AclWI | GGATC | 5 cut(s) | 126, 302, 353, 428, 482 |
| AcsI | RAATTY | 2 cut(s) | 167, 337 |
| AcuI | CTGAAG | 1 cut(s) | 182 |
| AfaI | GTAC | 4 cut(s) | 304, 321, 333, 457 |
| AfeI | AGCGCT | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 296 |
| AgeI | ACCGGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 3 cut(s) | 208, 223, 634 |
| AjiI | CACGTC | 1 cut(s) | 145 |
| AjnI | CCWGG | 1 cut(s) | 436 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 158, 190, 308, 340 |
| AluBI | AGCT | 1 cut(s) | 465 |
| AluI | AGCT | 1 cut(s) | 465 |
| AlwI | GGATC | 5 cut(s) | 126, 302, 353, 428, 482 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 621 |
| Aor51HI | AGCGCT | 1 cut(s) | 159 |
| ApoI | RAATTY | 2 cut(s) | 167, 337 |
| AsiGI | ACCGGT | 1 cut(s) | 50 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 167 |
| Asp718I | GGTACC | 1 cut(s) | 319 |
| AspLEI | GCGC | 1 cut(s) | 160 |
| AspS9I | GGNCC | 3 cut(s) | 378, 417, 571 |
| AsuC2I | CCSGG | 1 cut(s) | 460 |
| AsuHPI | GGTGA | 3 cut(s) | 40, 452, 461 |
| AvaII | GGWCC | 3 cut(s) | 378, 417, 571 |
| BanI | GGYRCC | 1 cut(s) | 319 |
| BccI | CCATC | 5 cut(s) | 58, 286, 290, 440, 507 |
| BciT130I | CCWGG | 1 cut(s) | 438 |
| BcnI | CCSGG | 1 cut(s) | 460 |
| BfaI | CTAG | 2 cut(s) | 137, 354 |
| BfoI | RGCGCY | 1 cut(s) | 161 |
| Bme1390I | CCNGG | 2 cut(s) | 438, 460 |
| Bme18I | GGWCC | 3 cut(s) | 378, 417, 571 |
| BmgBI | CACGTC | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 3 cut(s) | 378, 417, 571 |
| BmiI | GGNNCC | 3 cut(s) | 188, 321, 418 |
| BmrFI | CCNGG | 2 cut(s) | 438, 460 |
| BmsI | GCATC | 3 cut(s) | 98, 100, 239 |
| BpmI | CTGGAG | 1 cut(s) | 107 |
| BpuEI | CTTGAG | 2 cut(s) | 305, 367 |
| BpuMI | CCSGG | 1 cut(s) | 460 |
| BsaBI | GATNNNNATC | 1 cut(s) | 432 |
| BsaJI | CCNNGG | 1 cut(s) | 254 |
| BsaWI | WCCGGW | 2 cut(s) | 50, 538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 296 |
| Bse118I | RCCGGY | 1 cut(s) | 50 |
| Bse8I | GATNNNNATC | 1 cut(s) | 432 |
| BseBI | CCWGG | 1 cut(s) | 438 |
| BseDI | CCNNGG | 1 cut(s) | 254 |
| BseGI | GGATG | 5 cut(s) | 89, 115, 254, 301, 496 |
| BseJI | GATNNNNATC | 1 cut(s) | 432 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BseRI | GAGGAG | 2 cut(s) | 83, 557 |
| BshNI | GGYRCC | 1 cut(s) | 319 |
| BshTI | ACCGGT | 1 cut(s) | 50 |
| BsiSI | CCGG | 3 cut(s) | 51, 459, 539 |
| BslFI | GGGAC | 1 cut(s) | 430 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BsmFI | GGGAC | 1 cut(s) | 430 |
| Bsp143I | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| BspACI | CCGC | 1 cut(s) | 113 |
| BspLI | GGNNCC | 3 cut(s) | 188, 321, 418 |
| BspPI | GGATC | 5 cut(s) | 126, 302, 353, 428, 482 |
| BspT107I | GGYRCC | 1 cut(s) | 319 |
| BsrFI | RCCGGY | 1 cut(s) | 50 |
| BssAI | RCCGGY | 1 cut(s) | 50 |
| BssECI | CCNNGG | 1 cut(s) | 254 |
| BssMI | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| Bst2UI | CCWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 1 cut(s) | 596 |
| BstDEI | CTNAG | 3 cut(s) | 35, 374, 549 |
| BstDSI | CCRYGG | 1 cut(s) | 254 |
| BstF5I | GGATG | 5 cut(s) | 89, 115, 254, 301, 496 |
| BstH2I | RGCGCY | 1 cut(s) | 161 |
| BstHHI | GCGC | 1 cut(s) | 160 |
| BstKTI | GATC | 6 cut(s) | 121, 310, 348, 373, 436, 477 |
| BstMBI | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 157, 286 |
| BstNI | CCWGG | 1 cut(s) | 438 |
| BstNSI | RCATGY | 1 cut(s) | 614 |
| BstSCI | CCNGG | 2 cut(s) | 436, 458 |
| BstX2I | RGATCY | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 118 |
| BtgI | CCRYGG | 1 cut(s) | 254 |
| BtrI | CACGTC | 1 cut(s) | 145 |
| BtsCI | GGATG | 5 cut(s) | 89, 115, 254, 301, 496 |
| CaiI | CAGNNNCTG | 1 cut(s) | 621 |
| CfoI | GCGC | 1 cut(s) | 160 |
| Cfr10I | RCCGGY | 1 cut(s) | 50 |
| Cfr13I | GGNCC | 3 cut(s) | 378, 417, 571 |
| CseI | GACGC | 1 cut(s) | 497 |
| Csp6I | GTAC | 4 cut(s) | 303, 320, 332, 456 |
| CspAI | ACCGGT | 1 cut(s) | 50 |
| CviAII | CATG | 1 cut(s) | 611 |
| CviJI | RGCY | 7 cut(s) | 34, 136, 187, 289, 353, 465, 641 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 136, 187, 289, 353, 465, 641 |
| CviQI | GTAC | 4 cut(s) | 303, 320, 332, 456 |
| DdeI | CTNAG | 3 cut(s) | 35, 374, 549 |
| DpnI | GATC | 6 cut(s) | 120, 309, 347, 372, 435, 476 |
| DpnII | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| Eco47I | GGWCC | 3 cut(s) | 378, 417, 571 |
| Eco47III | AGCGCT | 1 cut(s) | 159 |
| Eco57I | CTGAAG | 1 cut(s) | 182 |
| EcoO109I | RGGNCCY | 3 cut(s) | 378, 417, 571 |
| EcoRII | CCWGG | 1 cut(s) | 436 |
| FaeI | CATG | 1 cut(s) | 614 |
| FaiI | YATR | 5 cut(s) | 131, 521, 567, 612, 652 |
| FaqI | GGGAC | 1 cut(s) | 430 |
| FatI | CATG | 1 cut(s) | 610 |
| FblI | GTMKAC | 1 cut(s) | 469 |
| FokI | GGATG | 5 cut(s) | 76, 122, 261, 308, 503 |
| FspBI | CTAG | 2 cut(s) | 137, 354 |
| GlaI | GCGC | 1 cut(s) | 159 |
| GsuI | CTGGAG | 1 cut(s) | 107 |
| HaeII | RGCGCY | 1 cut(s) | 161 |
| HapII | CCGG | 3 cut(s) | 51, 459, 539 |
| HgaI | GACGC | 1 cut(s) | 497 |
| HhaI | GCGC | 1 cut(s) | 160 |
| Hin1II | CATG | 1 cut(s) | 614 |
| Hin6I | GCGC | 1 cut(s) | 158 |
| HinP1I | GCGC | 1 cut(s) | 158 |
| HinfI | GANTC | 3 cut(s) | 215, 226, 545 |
| HpaII | CCGG | 3 cut(s) | 51, 459, 539 |
| HphI | GGTGA | 3 cut(s) | 40, 452, 461 |
| Hpy166II | GTNNAC | 3 cut(s) | 48, 258, 470 |
| Hpy188I | TCNGA | 1 cut(s) | 109 |
| Hpy188III | TCNNGA | 4 cut(s) | 124, 190, 384, 560 |
| Hpy8I | GTNNAC | 3 cut(s) | 48, 258, 470 |
| Hpy99I | CGWCG | 1 cut(s) | 513 |
| HpyAV | CCTTC | 1 cut(s) | 310 |
| HpyCH4III | ACNGT | 1 cut(s) | 596 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyCH4V | TGCA | 3 cut(s) | 16, 89, 280 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 157, 286 |
| HpyF3I | CTNAG | 3 cut(s) | 35, 374, 549 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 1 cut(s) | 614 |
| HspAI | GCGC | 1 cut(s) | 158 |
| KpnI | GGTACC | 1 cut(s) | 323 |
| Kzo9I | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| LmnI | GCTCC | 3 cut(s) | 148, 192, 462 |
| LweI | GCATC | 3 cut(s) | 98, 100, 239 |
| MaeI | CTAG | 2 cut(s) | 137, 354 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MalI | GATC | 6 cut(s) | 120, 309, 347, 372, 435, 476 |
| MboI | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| MboII | GAAGA | 3 cut(s) | 175, 235, 612 |
| MflI | RGATCY | 1 cut(s) | 118 |
| MluCI | AATT | 5 cut(s) | 84, 152, 167, 337, 399 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MmeI | TCCRAC | 1 cut(s) | 468 |
| MroXI | GAANNNNTTC | 1 cut(s) | 167 |
| MseI | TTAA | 2 cut(s) | 242, 531 |
| MspI | CCGG | 3 cut(s) | 51, 459, 539 |
| MspR9I | CCNGG | 2 cut(s) | 438, 460 |
| MvaI | CCWGG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 157, 286 |
| NciI | CCSGG | 1 cut(s) | 460 |
| NdeII | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| NlaIII | CATG | 1 cut(s) | 614 |
| NlaIV | GGNNCC | 3 cut(s) | 188, 321, 418 |
| NspI | RCATGY | 1 cut(s) | 614 |
| PdmI | GAANNNNTTC | 1 cut(s) | 167 |
| PfeI | GAWTC | 2 cut(s) | 215, 226 |
| PinAI | ACCGGT | 1 cut(s) | 50 |
| PleI | GAGTC | 1 cut(s) | 553 |
| PpsI | GAGTC | 1 cut(s) | 553 |
| PpuMI | RGGWCCY | 3 cut(s) | 378, 417, 571 |
| PsiI | TTATAA | 1 cut(s) | 131 |
| Psp5II | RGGWCCY | 3 cut(s) | 378, 417, 571 |
| Psp6I | CCWGG | 1 cut(s) | 436 |
| PspGI | CCWGG | 1 cut(s) | 436 |
| PspN4I | GGNNCC | 3 cut(s) | 188, 321, 418 |
| PspPI | GGNCC | 3 cut(s) | 378, 417, 571 |
| PspPPI | RGGWCCY | 3 cut(s) | 378, 417, 571 |
| PstNI | CAGNNNCTG | 1 cut(s) | 621 |
| PsuI | RGATCY | 1 cut(s) | 118 |
| RsaI | GTAC | 4 cut(s) | 304, 321, 333, 457 |
| RsaNI | GTAC | 4 cut(s) | 303, 320, 332, 456 |
| SaqAI | TTAA | 2 cut(s) | 242, 531 |
| Sau3AI | GATC | 6 cut(s) | 118, 307, 345, 370, 433, 474 |
| Sau96I | GGNCC | 3 cut(s) | 378, 417, 571 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 2 cut(s) | 438, 460 |
| SfaNI | GCATC | 3 cut(s) | 98, 100, 239 |
| SinI | GGWCC | 3 cut(s) | 378, 417, 571 |
| SmlI | CTYRAG | 2 cut(s) | 284, 382 |
| SmoI | CTYRAG | 2 cut(s) | 284, 382 |
| Sse9I | AATT | 5 cut(s) | 84, 152, 167, 337, 399 |
| SsiI | CCGC | 1 cut(s) | 113 |
| SspI | AATATT | 1 cut(s) | 409 |
| SspMI | CTAG | 2 cut(s) | 137, 354 |
| StyD4I | CCNGG | 2 cut(s) | 436, 458 |
| TaaI | ACNGT | 1 cut(s) | 596 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TaqI | TCGA | 1 cut(s) | 511 |
| TasI | AATT | 5 cut(s) | 84, 152, 167, 337, 399 |
| TfiI | GAWTC | 2 cut(s) | 215, 226 |
| Tru1I | TTAA | 2 cut(s) | 242, 531 |
| Tru9I | TTAA | 2 cut(s) | 242, 531 |
| TspDTI | ATGAA | 3 cut(s) | 207, 329, 549 |
| TspGWI | ACGGA | 1 cut(s) | 487 |
| VpaK11BI | GGWCC | 3 cut(s) | 378, 417, 571 |
| XapI | RAATTY | 2 cut(s) | 167, 337 |
| XceI | RCATGY | 1 cut(s) | 614 |
| XmiI | GTMKAC | 1 cut(s) | 469 |
| XmnI | GAANNNNTTC | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 137, 354 |