ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 428 |
| AccB1I | GGYRCC | 1 cut(s) | 582 |
| AciI | CCGC | 4 cut(s) | 310, 320, 536, 587 |
| AclI | AACGTT | 1 cut(s) | 529 |
| AclWI | GGATC | 1 cut(s) | 362 |
| AfaI | GTAC | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 109 |
| AgsI | TTSAA | 1 cut(s) | 477 |
| AjnI | CCWGG | 1 cut(s) | 5 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 155, 187 |
| AluBI | AGCT | 3 cut(s) | 408, 508, 596 |
| AluI | AGCT | 3 cut(s) | 408, 508, 596 |
| Alw26I | GTCTC | 2 cut(s) | 110, 222 |
| AlwI | GGATC | 1 cut(s) | 362 |
| Ama87I | CYCGRG | 1 cut(s) | 681 |
| ApeKI | GCWGC | 4 cut(s) | 405, 408, 589, 596 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 129 |
| AspLEI | GCGC | 1 cut(s) | 429 |
| AsuC2I | CCSGG | 1 cut(s) | 483 |
| AsuHPI | GGTGA | 1 cut(s) | 194 |
| AvaI | CYCGRG | 1 cut(s) | 681 |
| BaeGI | GKGCMC | 1 cut(s) | 587 |
| BanI | GGYRCC | 1 cut(s) | 582 |
| BauI | CACGAG | 1 cut(s) | 176 |
| BbvI | GCAGC | 4 cut(s) | 395, 417, 576, 583 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BciT130I | CCWGG | 1 cut(s) | 7 |
| BciVI | GTATCC | 1 cut(s) | 569 |
| BclI | TGATCA | 2 cut(s) | 57, 222 |
| BcnI | CCSGG | 1 cut(s) | 483 |
| BcoDI | GTCTC | 2 cut(s) | 110, 222 |
| BfuI | GTATCC | 1 cut(s) | 569 |
| BglII | AGATCT | 1 cut(s) | 272 |
| BisI | GCNGC | 4 cut(s) | 406, 409, 590, 597 |
| BlsI | GCNGC | 4 cut(s) | 407, 410, 591, 598 |
| BmcAI | AGTACT | 1 cut(s) | 229 |
| Bme1390I | CCNGG | 2 cut(s) | 7, 483 |
| BmeT110I | CYCGRG | 1 cut(s) | 681 |
| BmiI | GGNNCC | 4 cut(s) | 11, 249, 584, 615 |
| BmrFI | CCNGG | 2 cut(s) | 7, 483 |
| BmrI | ACTGGG | 1 cut(s) | 354 |
| BmsI | GCATC | 3 cut(s) | 244, 324, 438 |
| BmuI | ACTGGG | 1 cut(s) | 354 |
| BpmI | CTGGAG | 1 cut(s) | 621 |
| BpuMI | CCSGG | 1 cut(s) | 483 |
| Bsa29I | ATCGAT | 1 cut(s) | 444 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 109 |
| Bse1I | ACTGG | 2 cut(s) | 27, 349 |
| BseBI | CCWGG | 1 cut(s) | 7 |
| BseCI | ATCGAT | 1 cut(s) | 444 |
| BseGI | GGATG | 2 cut(s) | 315, 429 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BseMII | CTCAG | 1 cut(s) | 99 |
| BseNI | ACTGG | 2 cut(s) | 27, 349 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseSI | GKGCMC | 1 cut(s) | 587 |
| BseXI | GCAGC | 4 cut(s) | 395, 417, 576, 583 |
| BsgI | GTGCAG | 1 cut(s) | 47 |
| BshNI | GGYRCC | 1 cut(s) | 582 |
| BshVI | ATCGAT | 1 cut(s) | 444 |
| BsiHKCI | CYCGRG | 1 cut(s) | 681 |
| BsiSI | CCGG | 1 cut(s) | 482 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BsmAI | GTCTC | 2 cut(s) | 110, 222 |
| BsmBI | CGTCTC | 1 cut(s) | 110 |
| BsoBI | CYCGRG | 1 cut(s) | 681 |
| Bsp1286I | GDGCHC | 1 cut(s) | 587 |
| Bsp143I | GATC | 4 cut(s) | 57, 222, 272, 354 |
| BspACI | CCGC | 4 cut(s) | 310, 320, 536, 587 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BspDI | ATCGAT | 1 cut(s) | 444 |
| BspLI | GGNNCC | 4 cut(s) | 11, 249, 584, 615 |
| BspPI | GGATC | 1 cut(s) | 362 |
| BspT107I | GGYRCC | 1 cut(s) | 582 |
| BsrI | ACTGG | 2 cut(s) | 27, 349 |
| BssMI | GATC | 4 cut(s) | 57, 222, 272, 354 |
| BssSI | CACGAG | 1 cut(s) | 176 |
| Bst2BI | CACGAG | 1 cut(s) | 176 |
| Bst2UI | CCWGG | 1 cut(s) | 7 |
| Bst4CI | ACNGT | 1 cut(s) | 121 |
| BstC8I | GCNNGC | 2 cut(s) | 587, 594 |
| BstDEI | CTNAG | 1 cut(s) | 108 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 107 |
| BstF5I | GGATG | 2 cut(s) | 315, 429 |
| BstHHI | GCGC | 1 cut(s) | 429 |
| BstKTI | GATC | 4 cut(s) | 60, 225, 275, 357 |
| BstMAI | GTCTC | 2 cut(s) | 110, 222 |
| BstMBI | GATC | 4 cut(s) | 57, 222, 272, 354 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 662 |
| BstNI | CCWGG | 1 cut(s) | 7 |
| BstSCI | CCNGG | 2 cut(s) | 5, 481 |
| BstSLI | GKGCMC | 1 cut(s) | 587 |
| BstV1I | GCAGC | 4 cut(s) | 395, 417, 576, 583 |
| BstX2I | RGATCY | 1 cut(s) | 272 |
| BstYI | RGATCY | 1 cut(s) | 272 |
| Bsu15I | ATCGAT | 1 cut(s) | 444 |
| BsuI | GTATCC | 1 cut(s) | 569 |
| BsuTUI | ATCGAT | 1 cut(s) | 444 |
| BtsCI | GGATG | 2 cut(s) | 315, 429 |
| Cac8I | GCNNGC | 2 cut(s) | 587, 594 |
| CfoI | GCGC | 1 cut(s) | 429 |
| ClaI | ATCGAT | 1 cut(s) | 444 |
| Csp6I | GTAC | 1 cut(s) | 228 |
| CviAII | CATG | 3 cut(s) | 387, 492, 657 |
| CviJI | RGCY | 6 cut(s) | 365, 408, 457, 508, 596, 680 |
| CviKI_1 | RGCY | 6 cut(s) | 365, 408, 457, 508, 596, 680 |
| CviQI | GTAC | 1 cut(s) | 228 |
| DdeI | CTNAG | 1 cut(s) | 108 |
| DpnI | GATC | 4 cut(s) | 59, 224, 274, 356 |
| DpnII | GATC | 4 cut(s) | 57, 222, 272, 354 |
| Eco88I | CYCGRG | 1 cut(s) | 681 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 107 |
| EcoRII | CCWGG | 1 cut(s) | 5 |
| Esp3I | CGTCTC | 1 cut(s) | 110 |
| FaeI | CATG | 3 cut(s) | 390, 495, 660 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FatI | CATG | 3 cut(s) | 386, 491, 656 |
| FauI | CCCGC | 3 cut(s) | 303, 327, 594 |
| FbaI | TGATCA | 2 cut(s) | 57, 222 |
| Fnu4HI | GCNGC | 4 cut(s) | 406, 409, 590, 597 |
| FokI | GGATG | 2 cut(s) | 302, 416 |
| Fsp4HI | GCNGC | 4 cut(s) | 406, 409, 590, 597 |
| FspI | TGCGCA | 1 cut(s) | 428 |
| GlaI | GCGC | 1 cut(s) | 428 |
| GluI | GCNGC | 4 cut(s) | 406, 409, 590, 597 |
| GsuI | CTGGAG | 1 cut(s) | 621 |
| HapII | CCGG | 1 cut(s) | 482 |
| HhaI | GCGC | 1 cut(s) | 429 |
| Hin1II | CATG | 3 cut(s) | 390, 495, 660 |
| Hin6I | GCGC | 1 cut(s) | 427 |
| HinP1I | GCGC | 1 cut(s) | 427 |
| HincII | GTYRAC | 2 cut(s) | 192, 382 |
| HindII | GTYRAC | 2 cut(s) | 192, 382 |
| HindIII | AAGCTT | 1 cut(s) | 506 |
| HinfI | GANTC | 3 cut(s) | 84, 215, 420 |
| HpaI | GTTAAC | 1 cut(s) | 382 |
| HpaII | CCGG | 1 cut(s) | 482 |
| HphI | GGTGA | 1 cut(s) | 194 |
| Hpy166II | GTNNAC | 4 cut(s) | 95, 192, 382, 533 |
| Hpy188I | TCNGA | 2 cut(s) | 222, 434 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 276 |
| Hpy8I | GTNNAC | 4 cut(s) | 95, 192, 382, 533 |
| HpyAV | CCTTC | 4 cut(s) | 23, 385, 643, 670 |
| HpyCH4III | ACNGT | 1 cut(s) | 121 |
| HpyCH4IV | ACGT | 1 cut(s) | 529 |
| HpyCH4V | TGCA | 4 cut(s) | 28, 257, 463, 641 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 662 |
| HpyF3I | CTNAG | 1 cut(s) | 108 |
| HpySE526I | ACGT | 1 cut(s) | 529 |
| Hsp92II | CATG | 3 cut(s) | 390, 495, 660 |
| HspAI | GCGC | 1 cut(s) | 427 |
| Ksp22I | TGATCA | 2 cut(s) | 57, 222 |
| KspAI | GTTAAC | 1 cut(s) | 382 |
| Kzo9I | GATC | 4 cut(s) | 57, 222, 272, 354 |
| Lsp1109I | GCAGC | 4 cut(s) | 395, 417, 576, 583 |
| LweI | GCATC | 3 cut(s) | 244, 324, 438 |
| MaeII | ACGT | 1 cut(s) | 529 |
| MalI | GATC | 4 cut(s) | 59, 224, 274, 356 |
| MboI | GATC | 4 cut(s) | 57, 222, 272, 354 |
| MboII | GAAGA | 4 cut(s) | 163, 350, 461, 658 |
| MflI | RGATCY | 1 cut(s) | 272 |
| MhlI | GDGCHC | 1 cut(s) | 587 |
| MluCI | AATT | 2 cut(s) | 185, 477 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MmeI | TCCRAC | 2 cut(s) | 276, 498 |
| MnlI | CCTC | 9 cut(s) | 27, 61, 64, 103, 185, 292, 328, 333, 355 |
| MroXI | GAANNNNTTC | 1 cut(s) | 129 |
| MseI | TTAA | 1 cut(s) | 381 |
| MslI | CAYNNNNRTG | 1 cut(s) | 434 |
| MspA1I | CMGCKG | 2 cut(s) | 408, 589 |
| MspI | CCGG | 1 cut(s) | 482 |
| MspR9I | CCNGG | 2 cut(s) | 7, 483 |
| MvaI | CCWGG | 1 cut(s) | 7 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 662 |
| NciI | CCSGG | 1 cut(s) | 483 |
| NdeII | GATC | 4 cut(s) | 57, 222, 272, 354 |
| NlaIII | CATG | 3 cut(s) | 390, 495, 660 |
| NlaIV | GGNNCC | 4 cut(s) | 11, 249, 584, 615 |
| NsbI | TGCGCA | 1 cut(s) | 428 |
| PdmI | GAANNNNTTC | 1 cut(s) | 129 |
| PfeI | GAWTC | 2 cut(s) | 84, 420 |
| PflFI | GACNNNGTC | 1 cut(s) | 493 |
| PkrI | GCNGC | 4 cut(s) | 407, 410, 591, 598 |
| PleI | GAGTC | 1 cut(s) | 223 |
| PpsI | GAGTC | 1 cut(s) | 223 |
| Psp1406I | AACGTT | 1 cut(s) | 529 |
| Psp6I | CCWGG | 1 cut(s) | 5 |
| PspGI | CCWGG | 1 cut(s) | 5 |
| PspN4I | GGNNCC | 4 cut(s) | 11, 249, 584, 615 |
| PsuI | RGATCY | 1 cut(s) | 272 |
| PsyI | GACNNNGTC | 1 cut(s) | 493 |
| PvuII | CAGCTG | 1 cut(s) | 408 |
| RsaI | GTAC | 1 cut(s) | 229 |
| RsaNI | GTAC | 1 cut(s) | 228 |
| RseI | CAYNNNNRTG | 1 cut(s) | 434 |
| SaqAI | TTAA | 1 cut(s) | 381 |
| SatI | GCNGC | 4 cut(s) | 406, 409, 590, 597 |
| Sau3AI | GATC | 4 cut(s) | 57, 222, 272, 354 |
| ScaI | AGTACT | 1 cut(s) | 229 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 2 cut(s) | 7, 483 |
| SduI | GDGCHC | 1 cut(s) | 587 |
| SetI | ASST | 5 cut(s) | 75, 410, 510, 532, 598 |
| SfaNI | GCATC | 3 cut(s) | 244, 324, 438 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 434 |
| Sse9I | AATT | 2 cut(s) | 185, 477 |
| SsiI | CCGC | 4 cut(s) | 310, 320, 536, 587 |
| StyD4I | CCNGG | 2 cut(s) | 5, 481 |
| TaaI | ACNGT | 1 cut(s) | 121 |
| TaiI | ACGT | 1 cut(s) | 532 |
| TaqI | TCGA | 2 cut(s) | 277, 444 |
| TasI | AATT | 2 cut(s) | 185, 477 |
| TatI | WGTACW | 1 cut(s) | 227 |
| TfiI | GAWTC | 2 cut(s) | 84, 420 |
| Tru1I | TTAA | 1 cut(s) | 381 |
| Tru9I | TTAA | 1 cut(s) | 381 |
| TseI | GCWGC | 4 cut(s) | 405, 408, 589, 596 |
| TspDTI | ATGAA | 3 cut(s) | 31, 462, 540 |
| TspGWI | ACGGA | 1 cut(s) | 626 |
| Tth111I | GACNNNGTC | 1 cut(s) | 493 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 107 |
| XmnI | GAANNNNTTC | 1 cut(s) | 129 |
| ZrmI | AGTACT | 1 cut(s) | 229 |