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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 197 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 401 |
| AccBSI | CCGCTC | 1 cut(s) | 52 |
| AccII | CGCG | 1 cut(s) | 141 |
| AciI | CCGC | 3 cut(s) | 52, 162, 283 |
| AclWI | GGATC | 3 cut(s) | 123, 293, 306 |
| AcoI | YGGCCR | 1 cut(s) | 513 |
| AcsI | RAATTY | 1 cut(s) | 370 |
| AcyI | GRCGYC | 1 cut(s) | 194 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 26, 42, 401 |
| AgsI | TTSAA | 4 cut(s) | 279, 348, 370, 380 |
| AjnI | CCWGG | 2 cut(s) | 35, 465 |
| AluBI | AGCT | 2 cut(s) | 16, 428 |
| AluI | AGCT | 2 cut(s) | 16, 428 |
| Alw26I | GTCTC | 2 cut(s) | 192, 312 |
| AlwI | GGATC | 3 cut(s) | 123, 293, 306 |
| AoxI | GGCC | 4 cut(s) | 244, 431, 463, 513 |
| ApeKI | GCWGC | 1 cut(s) | 16 |
| ApoI | RAATTY | 1 cut(s) | 370 |
| AspLEI | GCGC | 1 cut(s) | 143 |
| AspS9I | GGNCC | 3 cut(s) | 245, 431, 463 |
| AsuC2I | CCSGG | 1 cut(s) | 517 |
| AsuHPI | GGTGA | 1 cut(s) | 218 |
| BamHI | GGATCC | 1 cut(s) | 298 |
| BbvI | GCAGC | 1 cut(s) | 3 |
| BccI | CCATC | 2 cut(s) | 80, 470 |
| BceAI | ACGGC | 1 cut(s) | 4 |
| BciT130I | CCWGG | 2 cut(s) | 37, 467 |
| BcnI | CCSGG | 1 cut(s) | 517 |
| BcoDI | GTCTC | 2 cut(s) | 192, 312 |
| BfaI | CTAG | 3 cut(s) | 42, 420, 534 |
| BisI | GCNGC | 1 cut(s) | 17 |
| BlsI | GCNGC | 1 cut(s) | 18 |
| Bme1390I | CCNGG | 3 cut(s) | 37, 467, 517 |
| BmgT120I | GGNCC | 3 cut(s) | 245, 431, 463 |
| BmiI | GGNNCC | 2 cut(s) | 231, 300 |
| BmrFI | CCNGG | 3 cut(s) | 37, 467, 517 |
| BmsI | GCATC | 1 cut(s) | 57 |
| Bpu10I | CCTNAGC | 2 cut(s) | 12, 71 |
| BpuMI | CCSGG | 1 cut(s) | 517 |
| BsaHI | GRCGYC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 3 cut(s) | 111, 165, 466 |
| BsaWI | WCCGGW | 1 cut(s) | 177 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 26, 42, 401 |
| Bse1I | ACTGG | 1 cut(s) | 395 |
| Bse3DI | GCAATG | 1 cut(s) | 524 |
| BseBI | CCWGG | 2 cut(s) | 37, 467 |
| BseDI | CCNNGG | 3 cut(s) | 111, 165, 466 |
| BseGI | GGATG | 5 cut(s) | 61, 91, 175, 221, 415 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 26, 42, 401 |
| BseMI | GCAATG | 1 cut(s) | 524 |
| BseNI | ACTGG | 1 cut(s) | 395 |
| BseRI | GAGGAG | 2 cut(s) | 62, 166 |
| BseXI | GCAGC | 1 cut(s) | 3 |
| BseYI | CCCAGC | 1 cut(s) | 428 |
| Bsh1236I | CGCG | 1 cut(s) | 141 |
| Bsh1285I | CGRYCG | 1 cut(s) | 178 |
| BshFI | GGCC | 4 cut(s) | 246, 433, 465, 515 |
| BsiEI | CGRYCG | 1 cut(s) | 178 |
| BsiSI | CCGG | 2 cut(s) | 178, 516 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 26, 42, 401 |
| BsmAI | GTCTC | 2 cut(s) | 192, 312 |
| BsnI | GGCC | 4 cut(s) | 246, 433, 465, 515 |
| Bsp143I | GATC | 2 cut(s) | 115, 298 |
| Bsp19I | CCATGG | 1 cut(s) | 165 |
| BspACI | CCGC | 3 cut(s) | 52, 162, 283 |
| BspANI | GGCC | 4 cut(s) | 246, 433, 465, 515 |
| BspCNI | CTCAG | 1 cut(s) | 4 |
| BspFNI | CGCG | 1 cut(s) | 141 |
| BspLI | GGNNCC | 2 cut(s) | 231, 300 |
| BspPI | GGATC | 3 cut(s) | 123, 293, 306 |
| BsrBI | CCGCTC | 1 cut(s) | 52 |
| BsrDI | GCAATG | 1 cut(s) | 524 |
| BsrI | ACTGG | 1 cut(s) | 395 |
| BssECI | CCNNGG | 3 cut(s) | 111, 165, 466 |
| BssMI | GATC | 2 cut(s) | 115, 298 |
| BssNI | GRCGYC | 1 cut(s) | 194 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 165 |
| Bst2UI | CCWGG | 2 cut(s) | 37, 467 |
| Bst4CI | ACNGT | 1 cut(s) | 306 |
| Bst6I | CTCTTC | 1 cut(s) | 143 |
| BstACI | GRCGYC | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 505 |
| BstDEI | CTNAG | 2 cut(s) | 12, 71 |
| BstDSI | CCRYGG | 1 cut(s) | 165 |
| BstF5I | GGATG | 5 cut(s) | 61, 91, 175, 221, 415 |
| BstFNI | CGCG | 1 cut(s) | 141 |
| BstHHI | GCGC | 1 cut(s) | 143 |
| BstKTI | GATC | 2 cut(s) | 118, 301 |
| BstMAI | GTCTC | 2 cut(s) | 192, 312 |
| BstMBI | GATC | 2 cut(s) | 115, 298 |
| BstMCI | CGRYCG | 1 cut(s) | 178 |
| BstNI | CCWGG | 2 cut(s) | 37, 467 |
| BstSCI | CCNGG | 3 cut(s) | 35, 465, 515 |
| BstUI | CGCG | 1 cut(s) | 141 |
| BstV1I | GCAGC | 1 cut(s) | 3 |
| BstX2I | RGATCY | 1 cut(s) | 298 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 324, 511 |
| BstYI | RGATCY | 1 cut(s) | 298 |
| BsuRI | GGCC | 4 cut(s) | 246, 433, 465, 515 |
| BtgI | CCRYGG | 1 cut(s) | 165 |
| BtsCI | GGATG | 5 cut(s) | 61, 91, 175, 221, 415 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 505 |
| CfoI | GCGC | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 3 cut(s) | 245, 431, 463 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 441, 476 |
| CviAII | CATG | 4 cut(s) | 166, 268, 457, 500 |
| CviJI | RGCY | 6 cut(s) | 16, 246, 428, 433, 465, 515 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 246, 428, 433, 465, 515 |
| DdeI | CTNAG | 2 cut(s) | 12, 71 |
| DpnI | GATC | 2 cut(s) | 117, 300 |
| DpnII | GATC | 2 cut(s) | 115, 298 |
| EaeI | YGGCCR | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 1 cut(s) | 143 |
| EarI | CTCTTC | 1 cut(s) | 143 |
| EciI | GGCGGA | 1 cut(s) | 151 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 165 |
| EcoO109I | RGGNCCY | 1 cut(s) | 245 |
| EcoRI | GAATTC | 1 cut(s) | 370 |
| EcoRII | CCWGG | 2 cut(s) | 35, 465 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 165 |
| ErhI | CCWWGG | 2 cut(s) | 111, 165 |
| FaeI | CATG | 4 cut(s) | 169, 271, 460, 503 |
| FaiI | YATR | 8 cut(s) | 95, 167, 255, 269, 458, 485, 492, 501 |
| FatI | CATG | 4 cut(s) | 165, 267, 456, 499 |
| FauI | CCCGC | 2 cut(s) | 45, 276 |
| Fnu4HI | GCNGC | 1 cut(s) | 17 |
| FokI | GGATG | 5 cut(s) | 68, 98, 182, 228, 422 |
| Fsp4HI | GCNGC | 1 cut(s) | 17 |
| FspBI | CTAG | 3 cut(s) | 42, 420, 534 |
| GlaI | GCGC | 1 cut(s) | 142 |
| GluI | GCNGC | 1 cut(s) | 17 |
| GsaI | CCCAGC | 1 cut(s) | 432 |
| HaeIII | GGCC | 4 cut(s) | 246, 433, 465, 515 |
| HapII | CCGG | 2 cut(s) | 178, 516 |
| HhaI | GCGC | 1 cut(s) | 143 |
| Hin1I | GRCGYC | 1 cut(s) | 194 |
| Hin1II | CATG | 4 cut(s) | 169, 271, 460, 503 |
| Hin6I | GCGC | 1 cut(s) | 141 |
| HinP1I | GCGC | 1 cut(s) | 141 |
| HinfI | GANTC | 1 cut(s) | 480 |
| HpaII | CCGG | 2 cut(s) | 178, 516 |
| HphI | GGTGA | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 29 |
| Hpy188I | TCNGA | 1 cut(s) | 192 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| Hpy8I | GTNNAC | 1 cut(s) | 29 |
| Hpy99I | CGWCG | 2 cut(s) | 196, 199 |
| HpyAV | CCTTC | 3 cut(s) | 71, 236, 274 |
| HpyCH4III | ACNGT | 1 cut(s) | 306 |
| HpyCH4IV | ACGT | 1 cut(s) | 194 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 71 |
| HpySE526I | ACGT | 1 cut(s) | 194 |
| Hsp92I | GRCGYC | 1 cut(s) | 194 |
| Hsp92II | CATG | 4 cut(s) | 169, 271, 460, 503 |
| HspAI | GCGC | 1 cut(s) | 141 |
| Kzo9I | GATC | 2 cut(s) | 115, 298 |
| LmnI | GCTCC | 2 cut(s) | 49, 121 |
| Lsp1109I | GCAGC | 1 cut(s) | 3 |
| LweI | GCATC | 1 cut(s) | 57 |
| MaeI | CTAG | 3 cut(s) | 42, 420, 534 |
| MaeII | ACGT | 1 cut(s) | 194 |
| MaeIII | GTNAC | 1 cut(s) | 206 |
| MalI | GATC | 2 cut(s) | 117, 300 |
| MbiI | CCGCTC | 1 cut(s) | 52 |
| MboI | GATC | 2 cut(s) | 115, 298 |
| MboII | GAAGA | 1 cut(s) | 160 |
| MfeI | CAATTG | 1 cut(s) | 125 |
| MflI | RGATCY | 1 cut(s) | 298 |
| MluCI | AATT | 5 cut(s) | 99, 125, 134, 370, 508 |
| MmeI | TCCRAC | 1 cut(s) | 215 |
| MseI | TTAA | 2 cut(s) | 333, 541 |
| MspI | CCGG | 2 cut(s) | 178, 516 |
| MspR9I | CCNGG | 3 cut(s) | 37, 467, 517 |
| MunI | CAATTG | 1 cut(s) | 125 |
| MvaI | CCWGG | 2 cut(s) | 37, 467 |
| MvnI | CGCG | 1 cut(s) | 141 |
| NciI | CCSGG | 1 cut(s) | 517 |
| NcoI | CCATGG | 1 cut(s) | 165 |
| NdeII | GATC | 2 cut(s) | 115, 298 |
| NlaIII | CATG | 4 cut(s) | 169, 271, 460, 503 |
| NlaIV | GGNNCC | 2 cut(s) | 231, 300 |
| NmuCI | GTSAC | 1 cut(s) | 206 |
| PfeI | GAWTC | 1 cut(s) | 480 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 401 |
| PkrI | GCNGC | 1 cut(s) | 18 |
| Psp6I | CCWGG | 2 cut(s) | 35, 465 |
| PspFI | CCCAGC | 1 cut(s) | 428 |
| PspGI | CCWGG | 2 cut(s) | 35, 465 |
| PspN4I | GGNNCC | 2 cut(s) | 231, 300 |
| PspPI | GGNCC | 3 cut(s) | 245, 431, 463 |
| PsuI | RGATCY | 1 cut(s) | 298 |
| SaqAI | TTAA | 2 cut(s) | 333, 541 |
| SatI | GCNGC | 1 cut(s) | 17 |
| Sau3AI | GATC | 2 cut(s) | 115, 298 |
| Sau96I | GGNCC | 3 cut(s) | 245, 431, 463 |
| ScrFI | CCNGG | 3 cut(s) | 37, 467, 517 |
| SetI | ASST | 7 cut(s) | 13, 18, 94, 197, 231, 430, 539 |
| SfaNI | GCATC | 1 cut(s) | 57 |
| Sse9I | AATT | 5 cut(s) | 99, 125, 134, 370, 508 |
| SsiI | CCGC | 3 cut(s) | 52, 162, 283 |
| SspMI | CTAG | 3 cut(s) | 42, 420, 534 |
| StyD4I | CCNGG | 3 cut(s) | 35, 465, 515 |
| StyI | CCWWGG | 2 cut(s) | 111, 165 |
| TaaI | ACNGT | 1 cut(s) | 306 |
| TaiI | ACGT | 1 cut(s) | 197 |
| TaqI | TCGA | 1 cut(s) | 65 |
| TasI | AATT | 5 cut(s) | 99, 125, 134, 370, 508 |
| TfiI | GAWTC | 1 cut(s) | 480 |
| Tru1I | TTAA | 2 cut(s) | 333, 541 |
| Tru9I | TTAA | 2 cut(s) | 333, 541 |
| TseFI | GTSAC | 1 cut(s) | 206 |
| TseI | GCWGC | 1 cut(s) | 16 |
| Tsp45I | GTSAC | 1 cut(s) | 206 |
| TspDTI | ATGAA | 3 cut(s) | 72, 256, 472 |
| TspGWI | ACGGA | 1 cut(s) | 225 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 401 |
| XapI | RAATTY | 1 cut(s) | 370 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 473 |
| XspI | CTAG | 3 cut(s) | 42, 420, 534 |
| ZraI | GACGTC | 1 cut(s) | 195 |