ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 317 |
| AciI | CCGC | 3 cut(s) | 152, 317, 451 |
| AclWI | GGATC | 1 cut(s) | 288 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 196, 197 |
| AflIII | ACRYGT | 1 cut(s) | 559 |
| AgsI | TTSAA | 4 cut(s) | 50, 182, 277, 352 |
| AjiI | CACGTC | 2 cut(s) | 75, 137 |
| AluBI | AGCT | 1 cut(s) | 128 |
| AluI | AGCT | 1 cut(s) | 128 |
| Alw21I | GWGCWC | 1 cut(s) | 234 |
| Alw26I | GTCTC | 1 cut(s) | 127 |
| AlwI | GGATC | 1 cut(s) | 288 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 431 |
| AoxI | GGCC | 2 cut(s) | 43, 121 |
| ApeKI | GCWGC | 1 cut(s) | 149 |
| AspLEI | GCGC | 2 cut(s) | 262, 317 |
| BanII | GRGCYC | 1 cut(s) | 501 |
| Bbv12I | GWGCWC | 1 cut(s) | 234 |
| BbvI | GCAGC | 1 cut(s) | 161 |
| BccI | CCATC | 2 cut(s) | 317, 428 |
| BcoDI | GTCTC | 1 cut(s) | 127 |
| BfmI | CTRYAG | 1 cut(s) | 147 |
| BfoI | RGCGCY | 1 cut(s) | 263 |
| BisI | GCNGC | 1 cut(s) | 150 |
| BlsI | GCNGC | 1 cut(s) | 151 |
| BmgBI | CACGTC | 2 cut(s) | 75, 137 |
| BmiI | GGNNCC | 1 cut(s) | 500 |
| BmsI | GCATC | 1 cut(s) | 369 |
| BoxI | GACNNNNGTC | 1 cut(s) | 560 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 248, 278 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 196, 197 |
| Bse3DI | GCAATG | 1 cut(s) | 315 |
| BseGI | GGATG | 2 cut(s) | 328, 392 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 196, 197 |
| BseMI | GCAATG | 1 cut(s) | 315 |
| BseMII | CTCAG | 1 cut(s) | 107 |
| BseXI | GCAGC | 1 cut(s) | 161 |
| Bsh1236I | CGCG | 1 cut(s) | 317 |
| BshFI | GGCC | 2 cut(s) | 45, 123 |
| BsiHKAI | GWGCWC | 1 cut(s) | 234 |
| BsiSI | CCGG | 1 cut(s) | 58 |
| BslFI | GGGAC | 1 cut(s) | 568 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 196, 197 |
| BsmAI | GTCTC | 1 cut(s) | 127 |
| BsmBI | CGTCTC | 1 cut(s) | 127 |
| BsmFI | GGGAC | 1 cut(s) | 568 |
| BsnI | GGCC | 2 cut(s) | 45, 123 |
| Bsp1286I | GDGCHC | 2 cut(s) | 234, 501 |
| Bsp143I | GATC | 1 cut(s) | 280 |
| BspACI | CCGC | 3 cut(s) | 152, 317, 451 |
| BspANI | GGCC | 2 cut(s) | 45, 123 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspFNI | CGCG | 1 cut(s) | 317 |
| BspLI | GGNNCC | 1 cut(s) | 500 |
| BspMAI | CTGCAG | 1 cut(s) | 151 |
| BspPI | GGATC | 1 cut(s) | 288 |
| BsrDI | GCAATG | 1 cut(s) | 315 |
| BssMI | GATC | 1 cut(s) | 280 |
| Bst4CI | ACNGT | 1 cut(s) | 548 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 1 cut(s) | 121 |
| BstDEI | CTNAG | 1 cut(s) | 93 |
| BstF5I | GGATG | 2 cut(s) | 328, 392 |
| BstFNI | CGCG | 1 cut(s) | 317 |
| BstH2I | RGCGCY | 1 cut(s) | 263 |
| BstHHI | GCGC | 2 cut(s) | 262, 317 |
| BstKTI | GATC | 1 cut(s) | 283 |
| BstMAI | GTCTC | 1 cut(s) | 127 |
| BstMBI | GATC | 1 cut(s) | 280 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 125, 146, 314, 416 |
| BstNSI | RCATGY | 1 cut(s) | 563 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 560 |
| BstSFI | CTRYAG | 1 cut(s) | 147 |
| BstUI | CGCG | 1 cut(s) | 317 |
| BstV1I | GCAGC | 1 cut(s) | 161 |
| BstX2I | RGATCY | 1 cut(s) | 280 |
| BstYI | RGATCY | 1 cut(s) | 280 |
| BsuRI | GGCC | 2 cut(s) | 45, 123 |
| BtrI | CACGTC | 2 cut(s) | 75, 137 |
| BtsCI | GGATG | 2 cut(s) | 328, 392 |
| BtsI | GCAGTG | 1 cut(s) | 432 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 1 cut(s) | 121 |
| CaiI | CAGNNNCTG | 1 cut(s) | 431 |
| CfoI | GCGC | 2 cut(s) | 262, 317 |
| CseI | GACGC | 1 cut(s) | 197 |
| CviAII | CATG | 1 cut(s) | 560 |
| CviJI | RGCY | 9 cut(s) | 45, 61, 90, 123, 128, 327, 348, 419, 499 |
| CviKI_1 | RGCY | 9 cut(s) | 45, 61, 90, 123, 128, 327, 348, 419, 499 |
| DdeI | CTNAG | 1 cut(s) | 93 |
| DpnI | GATC | 1 cut(s) | 282 |
| DpnII | GATC | 1 cut(s) | 280 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Eco147I | AGGCCT | 1 cut(s) | 45 |
| Eco24I | GRGCYC | 1 cut(s) | 501 |
| EcoT38I | GRGCYC | 1 cut(s) | 501 |
| Esp3I | CGTCTC | 1 cut(s) | 127 |
| FaeI | CATG | 1 cut(s) | 563 |
| FaqI | GGGAC | 1 cut(s) | 568 |
| FatI | CATG | 1 cut(s) | 559 |
| FauI | CCCGC | 1 cut(s) | 444 |
| Fnu4HI | GCNGC | 1 cut(s) | 150 |
| FokI | GGATG | 2 cut(s) | 335, 399 |
| FriOI | GRGCYC | 1 cut(s) | 501 |
| Fsp4HI | GCNGC | 1 cut(s) | 150 |
| GlaI | GCGC | 2 cut(s) | 261, 316 |
| GluI | GCNGC | 1 cut(s) | 150 |
| HaeII | RGCGCY | 1 cut(s) | 263 |
| HaeIII | GGCC | 2 cut(s) | 45, 123 |
| HapII | CCGG | 1 cut(s) | 58 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 2 cut(s) | 262, 317 |
| Hin1II | CATG | 1 cut(s) | 563 |
| Hin6I | GCGC | 2 cut(s) | 260, 315 |
| HinP1I | GCGC | 2 cut(s) | 260, 315 |
| HinfI | GANTC | 1 cut(s) | 470 |
| HpaII | CCGG | 1 cut(s) | 58 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 396 |
| Hpy188I | TCNGA | 3 cut(s) | 358, 445, 494 |
| Hpy188III | TCNNGA | 1 cut(s) | 565 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 396 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyAV | CCTTC | 2 cut(s) | 44, 271 |
| HpyCH4III | ACNGT | 1 cut(s) | 548 |
| HpyCH4IV | ACGT | 3 cut(s) | 27, 74, 136 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 308, 382 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 125, 146, 314, 416 |
| HpyF3I | CTNAG | 1 cut(s) | 93 |
| HpySE526I | ACGT | 3 cut(s) | 27, 74, 136 |
| Hsp92II | CATG | 1 cut(s) | 563 |
| HspAI | GCGC | 2 cut(s) | 260, 315 |
| Kzo9I | GATC | 1 cut(s) | 280 |
| LmnI | GCTCC | 1 cut(s) | 504 |
| Lsp1109I | GCAGC | 1 cut(s) | 161 |
| LweI | GCATC | 1 cut(s) | 369 |
| MaeII | ACGT | 3 cut(s) | 27, 74, 136 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 1 cut(s) | 282 |
| MboI | GATC | 1 cut(s) | 280 |
| MboII | GAAGA | 1 cut(s) | 170 |
| MflI | RGATCY | 1 cut(s) | 280 |
| MhlI | GDGCHC | 2 cut(s) | 234, 501 |
| MluCI | AATT | 3 cut(s) | 352, 359, 537 |
| MmeI | TCCRAC | 2 cut(s) | 87, 202 |
| MseI | TTAA | 2 cut(s) | 267, 516 |
| MspA1I | CMGCKG | 1 cut(s) | 152 |
| MspI | CCGG | 1 cut(s) | 58 |
| MvnI | CGCG | 1 cut(s) | 317 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 125, 146, 314, 416 |
| NdeII | GATC | 1 cut(s) | 280 |
| NlaIII | CATG | 1 cut(s) | 563 |
| NlaIV | GGNNCC | 1 cut(s) | 500 |
| NmeAIII | GCCGAG | 1 cut(s) | 149 |
| NmuCI | GTSAC | 1 cut(s) | 427 |
| NspI | RCATGY | 1 cut(s) | 563 |
| PceI | AGGCCT | 1 cut(s) | 45 |
| PciI | ACATGT | 1 cut(s) | 559 |
| PfeI | GAWTC | 1 cut(s) | 470 |
| PkrI | GCNGC | 1 cut(s) | 151 |
| PscI | ACATGT | 1 cut(s) | 559 |
| PshAI | GACNNNNGTC | 1 cut(s) | 560 |
| PspN4I | GGNNCC | 1 cut(s) | 500 |
| PstI | CTGCAG | 1 cut(s) | 151 |
| PstNI | CAGNNNCTG | 1 cut(s) | 431 |
| PsuI | RGATCY | 1 cut(s) | 280 |
| SaqAI | TTAA | 2 cut(s) | 267, 516 |
| SatI | GCNGC | 1 cut(s) | 150 |
| Sau3AI | GATC | 1 cut(s) | 280 |
| SduI | GDGCHC | 2 cut(s) | 234, 501 |
| SfaNI | GCATC | 1 cut(s) | 369 |
| SfcI | CTRYAG | 1 cut(s) | 147 |
| Sse9I | AATT | 3 cut(s) | 352, 359, 537 |
| SseBI | AGGCCT | 1 cut(s) | 45 |
| SsiI | CCGC | 3 cut(s) | 152, 317, 451 |
| StuI | AGGCCT | 1 cut(s) | 45 |
| TaaI | ACNGT | 1 cut(s) | 548 |
| TaiI | ACGT | 3 cut(s) | 30, 77, 139 |
| TasI | AATT | 3 cut(s) | 352, 359, 537 |
| TfiI | GAWTC | 1 cut(s) | 470 |
| Tru1I | TTAA | 2 cut(s) | 267, 516 |
| Tru9I | TTAA | 2 cut(s) | 267, 516 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseFI | GTSAC | 1 cut(s) | 427 |
| TseI | GCWGC | 1 cut(s) | 149 |
| Tsp45I | GTSAC | 1 cut(s) | 427 |
| TspGWI | ACGGA | 1 cut(s) | 251 |
| TspRI | CASTG | 1 cut(s) | 432 |
| XceI | RCATGY | 1 cut(s) | 563 |