ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 272, 386 |
| AcoI | YGGCCR | 1 cut(s) | 16 |
| AcsI | RAATTY | 1 cut(s) | 364 |
| AcuI | CTGAAG | 2 cut(s) | 267, 417 |
| AfaI | GTAC | 1 cut(s) | 375 |
| AflII | CTTAAG | 1 cut(s) | 161 |
| AgsI | TTSAA | 3 cut(s) | 236, 345, 526 |
| AjnI | CCWGG | 2 cut(s) | 210, 260 |
| AluBI | AGCT | 4 cut(s) | 132, 251, 299, 550 |
| AluI | AGCT | 4 cut(s) | 132, 251, 299, 550 |
| Alw21I | GWGCWC | 1 cut(s) | 134 |
| Alw26I | GTCTC | 3 cut(s) | 392, 654, 680 |
| AlwI | GGATC | 2 cut(s) | 272, 386 |
| AoxI | GGCC | 6 cut(s) | 16, 193, 208, 284, 330, 442 |
| ApaI | GGGCCC | 1 cut(s) | 334 |
| ApeKI | GCWGC | 1 cut(s) | 157 |
| ApoI | RAATTY | 1 cut(s) | 364 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 597 |
| AspS9I | GGNCC | 4 cut(s) | 7, 124, 330, 331 |
| AsuHPI | GGTGA | 3 cut(s) | 227, 479, 617 |
| AvaII | GGWCC | 2 cut(s) | 7, 124 |
| BaeGI | GKGCMC | 1 cut(s) | 334 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 72, 105 |
| BanII | GRGCYC | 2 cut(s) | 134, 334 |
| BbsI | GAAGAC | 1 cut(s) | 232 |
| Bbv12I | GWGCWC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 2 cut(s) | 316, 447 |
| BceAI | ACGGC | 2 cut(s) | 3, 235 |
| BciT130I | CCWGG | 2 cut(s) | 212, 262 |
| BclI | TGATCA | 1 cut(s) | 631 |
| BcoDI | GTCTC | 3 cut(s) | 392, 654, 680 |
| BfaI | CTAG | 4 cut(s) | 11, 93, 440, 474 |
| BfrI | CTTAAG | 1 cut(s) | 161 |
| BisI | GCNGC | 1 cut(s) | 158 |
| BlpI | GCTNAGC | 1 cut(s) | 681 |
| BlsI | GCNGC | 1 cut(s) | 159 |
| Bme1390I | CCNGG | 2 cut(s) | 212, 262 |
| Bme18I | GGWCC | 2 cut(s) | 7, 124 |
| BmgT120I | GGNCC | 4 cut(s) | 7, 124, 330, 331 |
| BmiI | GGNNCC | 3 cut(s) | 331, 332, 333 |
| BmrFI | CCNGG | 2 cut(s) | 212, 262 |
| BmsI | GCATC | 1 cut(s) | 460 |
| BpiI | GAAGAC | 1 cut(s) | 232 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 664, 696 |
| Bpu10I | CCTNAGC | 1 cut(s) | 128 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 681 |
| BsaI | GGTCTC | 1 cut(s) | 392 |
| BsaJI | CCNNGG | 1 cut(s) | 211 |
| Bse1I | ACTGG | 1 cut(s) | 88 |
| BseBI | CCWGG | 2 cut(s) | 212, 262 |
| BseDI | CCNNGG | 1 cut(s) | 211 |
| BseGI | GGATG | 1 cut(s) | 418 |
| BseMII | CTCAG | 3 cut(s) | 119, 399, 695 |
| BseNI | ACTGG | 1 cut(s) | 88 |
| BseRI | GAGGAG | 1 cut(s) | 165 |
| BseSI | GKGCMC | 1 cut(s) | 334 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BshFI | GGCC | 6 cut(s) | 18, 195, 210, 286, 332, 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 134 |
| BsmAI | GTCTC | 3 cut(s) | 392, 654, 680 |
| BsmI | GAATGC | 1 cut(s) | 653 |
| BsnI | GGCC | 6 cut(s) | 18, 195, 210, 286, 332, 444 |
| Bso31I | GGTCTC | 1 cut(s) | 392 |
| Bsp120I | GGGCCC | 1 cut(s) | 330 |
| Bsp1286I | GDGCHC | 2 cut(s) | 134, 334 |
| Bsp143I | GATC | 4 cut(s) | 264, 391, 460, 631 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 681 |
| BspANI | GGCC | 6 cut(s) | 18, 195, 210, 286, 332, 444 |
| BspCNI | CTCAG | 3 cut(s) | 120, 400, 694 |
| BspLI | GGNNCC | 3 cut(s) | 331, 332, 333 |
| BspPI | GGATC | 2 cut(s) | 272, 386 |
| BspTI | CTTAAG | 1 cut(s) | 161 |
| BspTNI | GGTCTC | 1 cut(s) | 392 |
| BsrI | ACTGG | 1 cut(s) | 88 |
| BssECI | CCNNGG | 1 cut(s) | 211 |
| BssMI | GATC | 4 cut(s) | 264, 391, 460, 631 |
| Bst2UI | CCWGG | 2 cut(s) | 212, 262 |
| Bst4CI | ACNGT | 1 cut(s) | 665 |
| BstAFI | CTTAAG | 1 cut(s) | 161 |
| BstC8I | GCNNGC | 1 cut(s) | 28 |
| BstDEI | CTNAG | 5 cut(s) | 128, 408, 551, 681, 707 |
| BstEII | GGTNACC | 1 cut(s) | 623 |
| BstF5I | GGATG | 1 cut(s) | 418 |
| BstKTI | GATC | 4 cut(s) | 267, 394, 463, 634 |
| BstMAI | GTCTC | 3 cut(s) | 392, 654, 680 |
| BstMBI | GATC | 4 cut(s) | 264, 391, 460, 631 |
| BstNI | CCWGG | 2 cut(s) | 212, 262 |
| BstPI | GGTNACC | 1 cut(s) | 623 |
| BstSCI | CCNGG | 2 cut(s) | 210, 260 |
| BstSLI | GKGCMC | 1 cut(s) | 334 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BstV2I | GAAGAC | 1 cut(s) | 232 |
| BsuRI | GGCC | 6 cut(s) | 18, 195, 210, 286, 332, 444 |
| BtsCI | GGATG | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 4 cut(s) | 7, 124, 330, 331 |
| Csp6I | GTAC | 1 cut(s) | 374 |
| CviAII | CATG | 2 cut(s) | 383, 635 |
| CviQI | GTAC | 1 cut(s) | 374 |
| DdeI | CTNAG | 5 cut(s) | 128, 408, 551, 681, 707 |
| DpnI | GATC | 4 cut(s) | 266, 393, 462, 633 |
| DpnII | GATC | 4 cut(s) | 264, 391, 460, 631 |
| EaeI | YGGCCR | 1 cut(s) | 16 |
| Ecl136II | GAGCTC | 1 cut(s) | 132 |
| Eco24I | GRGCYC | 2 cut(s) | 134, 334 |
| Eco31I | GGTCTC | 1 cut(s) | 392 |
| Eco47I | GGWCC | 2 cut(s) | 7, 124 |
| Eco53kI | GAGCTC | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 2 cut(s) | 267, 417 |
| Eco91I | GGTNACC | 1 cut(s) | 623 |
| EcoICRI | GAGCTC | 1 cut(s) | 132 |
| EcoO109I | RGGNCCY | 3 cut(s) | 7, 330, 331 |
| EcoO65I | GGTNACC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 2 cut(s) | 210, 260 |
| EcoT38I | GRGCYC | 2 cut(s) | 134, 334 |
| FaeI | CATG | 2 cut(s) | 386, 638 |
| FaiI | YATR | 9 cut(s) | 143, 145, 269, 370, 384, 404, 579, 591, 636 |
| FatI | CATG | 2 cut(s) | 382, 634 |
| FauNDI | CATATG | 1 cut(s) | 143 |
| FbaI | TGATCA | 1 cut(s) | 631 |
| Fnu4HI | GCNGC | 1 cut(s) | 158 |
| FokI | GGATG | 1 cut(s) | 425 |
| FriOI | GRGCYC | 2 cut(s) | 134, 334 |
| Fsp4HI | GCNGC | 1 cut(s) | 158 |
| FspBI | CTAG | 4 cut(s) | 11, 93, 440, 474 |
| GluI | GCNGC | 1 cut(s) | 158 |
| HaeIII | GGCC | 6 cut(s) | 18, 195, 210, 286, 332, 444 |
| Hin1II | CATG | 2 cut(s) | 386, 638 |
| HincII | GTYRAC | 1 cut(s) | 422 |
| HindII | GTYRAC | 1 cut(s) | 422 |
| HindIII | AAGCTT | 1 cut(s) | 548 |
| HinfI | GANTC | 4 cut(s) | 74, 501, 555, 673 |
| HphI | GGTGA | 3 cut(s) | 227, 479, 617 |
| Hpy166II | GTNNAC | 1 cut(s) | 422 |
| Hpy188I | TCNGA | 3 cut(s) | 79, 247, 506 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 127, 389, 395, 523 |
| Hpy8I | GTNNAC | 1 cut(s) | 422 |
| HpyAV | CCTTC | 3 cut(s) | 178, 206, 320 |
| HpyCH4III | ACNGT | 1 cut(s) | 665 |
| HpyCH4V | TGCA | 4 cut(s) | 26, 147, 428, 651 |
| HpyF3I | CTNAG | 5 cut(s) | 128, 408, 551, 681, 707 |
| Hsp92II | CATG | 2 cut(s) | 386, 638 |
| Ksp22I | TGATCA | 1 cut(s) | 631 |
| Kzo9I | GATC | 4 cut(s) | 264, 391, 460, 631 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| LweI | GCATC | 1 cut(s) | 460 |
| MaeI | CTAG | 4 cut(s) | 11, 93, 440, 474 |
| MaeIII | GTNAC | 2 cut(s) | 215, 623 |
| MalI | GATC | 4 cut(s) | 266, 393, 462, 633 |
| MboI | GATC | 4 cut(s) | 264, 391, 460, 631 |
| MboII | GAAGA | 3 cut(s) | 232, 410, 444 |
| MhlI | GDGCHC | 2 cut(s) | 134, 334 |
| MluCI | AATT | 3 cut(s) | 364, 604, 692 |
| MlyI | GAGTC | 2 cut(s) | 510, 682 |
| MnlI | CCTC | 4 cut(s) | 43, 143, 146, 403 |
| MroXI | GAANNNNTTC | 1 cut(s) | 597 |
| MseI | TTAA | 6 cut(s) | 162, 485, 534, 569, 639, 721 |
| MspCI | CTTAAG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 2 cut(s) | 212, 262 |
| Mva1269I | GAATGC | 1 cut(s) | 653 |
| MvaI | CCWGG | 2 cut(s) | 212, 262 |
| NdeI | CATATG | 1 cut(s) | 143 |
| NdeII | GATC | 4 cut(s) | 264, 391, 460, 631 |
| NlaIII | CATG | 2 cut(s) | 386, 638 |
| NlaIV | GGNNCC | 3 cut(s) | 331, 332, 333 |
| NmuCI | GTSAC | 2 cut(s) | 215, 623 |
| PctI | GAATGC | 1 cut(s) | 653 |
| PdmI | GAANNNNTTC | 1 cut(s) | 597 |
| PfeI | GAWTC | 2 cut(s) | 74, 555 |
| PfoI | TCCNGGA | 1 cut(s) | 260 |
| PkrI | GCNGC | 1 cut(s) | 159 |
| PleI | GAGTC | 2 cut(s) | 509, 681 |
| PpsI | GAGTC | 2 cut(s) | 509, 681 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| Psp124BI | GAGCTC | 1 cut(s) | 134 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| Psp6I | CCWGG | 2 cut(s) | 210, 260 |
| PspEI | GGTNACC | 1 cut(s) | 623 |
| PspGI | CCWGG | 2 cut(s) | 210, 260 |
| PspN4I | GGNNCC | 3 cut(s) | 331, 332, 333 |
| PspOMI | GGGCCC | 1 cut(s) | 330 |
| PspPI | GGNCC | 4 cut(s) | 7, 124, 330, 331 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| RsaI | GTAC | 1 cut(s) | 375 |
| RsaNI | GTAC | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 134 |
| SaqAI | TTAA | 6 cut(s) | 162, 485, 534, 569, 639, 721 |
| SatI | GCNGC | 1 cut(s) | 158 |
| Sau3AI | GATC | 4 cut(s) | 264, 391, 460, 631 |
| Sau96I | GGNCC | 4 cut(s) | 7, 124, 330, 331 |
| SchI | GAGTC | 2 cut(s) | 510, 682 |
| ScrFI | CCNGG | 2 cut(s) | 212, 262 |
| SduI | GDGCHC | 2 cut(s) | 134, 334 |
| SetI | ASST | 9 cut(s) | 12, 134, 208, 253, 301, 552, 569, 590, 630 |
| SfaNI | GCATC | 1 cut(s) | 460 |
| SinI | GGWCC | 2 cut(s) | 7, 124 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| Sse9I | AATT | 3 cut(s) | 364, 604, 692 |
| SspMI | CTAG | 4 cut(s) | 11, 93, 440, 474 |
| SstI | GAGCTC | 1 cut(s) | 134 |
| StyD4I | CCNGG | 2 cut(s) | 210, 260 |
| TaaI | ACNGT | 1 cut(s) | 665 |
| TaqI | TCGA | 3 cut(s) | 199, 291, 390 |
| TasI | AATT | 3 cut(s) | 364, 604, 692 |
| TfiI | GAWTC | 2 cut(s) | 74, 555 |
| Tru1I | TTAA | 6 cut(s) | 162, 485, 534, 569, 639, 721 |
| Tru9I | TTAA | 6 cut(s) | 162, 485, 534, 569, 639, 721 |
| TseFI | GTSAC | 2 cut(s) | 215, 623 |
| TseI | GCWGC | 1 cut(s) | 157 |
| Tsp45I | GTSAC | 2 cut(s) | 215, 623 |
| TspDTI | ATGAA | 3 cut(s) | 371, 594, 606 |
| Vha464I | CTTAAG | 1 cut(s) | 161 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 124 |
| XapI | RAATTY | 1 cut(s) | 364 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XmnI | GAANNNNTTC | 1 cut(s) | 597 |
| XspI | CTAG | 4 cut(s) | 11, 93, 440, 474 |