Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cgr1 | PF03879 | 73 - 146 | 8.4e-07 | Cgr1 family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 179 |
| AatII | GACGTC | 2 cut(s) | 498, 690 |
| AccBSI | CCGCTC | 1 cut(s) | 491 |
| AccI | GTMKAC | 1 cut(s) | 684 |
| AccII | CGCG | 2 cut(s) | 149, 250 |
| AccIII | TCCGGA | 1 cut(s) | 169 |
| AclWI | GGATC | 2 cut(s) | 138, 490 |
| AcoI | YGGCCR | 3 cut(s) | 187, 191, 213 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AcyI | GRCGYC | 2 cut(s) | 495, 687 |
| AfaI | GTAC | 1 cut(s) | 338 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 133, 185, 474, 531, 538 |
| AgsI | TTSAA | 1 cut(s) | 661 |
| AluBI | AGCT | 6 cut(s) | 198, 358, 454, 653, 673, 717 |
| AluI | AGCT | 6 cut(s) | 198, 358, 454, 653, 673, 717 |
| Alw21I | GWGCWC | 2 cut(s) | 646, 655 |
| Alw26I | GTCTC | 1 cut(s) | 229 |
| Alw44I | GTGCAC | 1 cut(s) | 642 |
| AlwI | GGATC | 2 cut(s) | 138, 490 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 720 |
| Aor13HI | TCCGGA | 1 cut(s) | 169 |
| AoxI | GGCC | 4 cut(s) | 3, 187, 191, 213 |
| ApaLI | GTGCAC | 1 cut(s) | 642 |
| ApeKI | GCWGC | 5 cut(s) | 244, 454, 555, 560, 714 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 23, 55 |
| AspLEI | GCGC | 3 cut(s) | 63, 560, 569 |
| AspS9I | GGNCC | 1 cut(s) | 447 |
| AsuC2I | CCSGG | 2 cut(s) | 217, 229 |
| AsuHPI | GGTGA | 4 cut(s) | 289, 337, 629, 635 |
| AvaII | GGWCC | 1 cut(s) | 447 |
| AxyI | CCTNAGG | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 646 |
| BanII | GRGCYC | 1 cut(s) | 655 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 320, 352 |
| BbsI | GAAGAC | 1 cut(s) | 175 |
| Bbv12I | GWGCWC | 2 cut(s) | 646, 655 |
| BbvI | GCAGC | 4 cut(s) | 256, 441, 542, 547 |
| BccI | CCATC | 2 cut(s) | 205, 545 |
| BceAI | ACGGC | 1 cut(s) | 662 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 80, 114 |
| BcnI | CCSGG | 2 cut(s) | 217, 229 |
| BcoDI | GTCTC | 1 cut(s) | 229 |
| BfaI | CTAG | 1 cut(s) | 29 |
| BfmI | CTRYAG | 1 cut(s) | 455 |
| BfoI | RGCGCY | 1 cut(s) | 570 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 229 |
| Bme18I | GGWCC | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 1 cut(s) | 447 |
| BmiI | GGNNCC | 2 cut(s) | 71, 448 |
| BmrFI | CCNGG | 2 cut(s) | 217, 229 |
| BmrI | ACTGGG | 1 cut(s) | 453 |
| BmsI | GCATC | 1 cut(s) | 88 |
| BmuI | ACTGGG | 1 cut(s) | 453 |
| BpiI | GAAGAC | 1 cut(s) | 175 |
| BpuMI | CCSGG | 2 cut(s) | 217, 229 |
| BsaBI | GATNNNNATC | 1 cut(s) | 630 |
| BsaHI | GRCGYC | 2 cut(s) | 495, 687 |
| BsaI | GGTCTC | 1 cut(s) | 229 |
| BsaJI | CCNNGG | 4 cut(s) | 105, 147, 159, 248 |
| BsaWI | WCCGGW | 1 cut(s) | 169 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 133, 185, 474, 531, 538 |
| Bse118I | RCCGGY | 1 cut(s) | 189 |
| Bse1I | ACTGG | 2 cut(s) | 179, 448 |
| Bse21I | CCTNAGG | 1 cut(s) | 407 |
| Bse8I | GATNNNNATC | 1 cut(s) | 630 |
| BseAI | TCCGGA | 1 cut(s) | 169 |
| BseDI | CCNNGG | 4 cut(s) | 105, 147, 159, 248 |
| BseJI | GATNNNNATC | 1 cut(s) | 630 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 133, 185, 474, 531, 538 |
| BseMII | CTCAG | 2 cut(s) | 398, 649 |
| BseNI | ACTGG | 2 cut(s) | 179, 448 |
| BseRI | GAGGAG | 5 cut(s) | 148, 317, 401, 409, 518 |
| BseSI | GKGCMC | 1 cut(s) | 646 |
| BseX3I | CGGCCG | 2 cut(s) | 187, 191 |
| BseXI | GCAGC | 4 cut(s) | 256, 441, 542, 547 |
| Bsh1236I | CGCG | 2 cut(s) | 149, 250 |
| Bsh1285I | CGRYCG | 2 cut(s) | 190, 194 |
| BshFI | GGCC | 4 cut(s) | 5, 189, 193, 215 |
| BsiEI | CGRYCG | 2 cut(s) | 190, 194 |
| BsiHKAI | GWGCWC | 2 cut(s) | 646, 655 |
| BsiSI | CCGG | 6 cut(s) | 170, 190, 216, 228, 283, 532 |
| BslFI | GGGAC | 3 cut(s) | 304, 460, 508 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 133, 185, 474, 531, 538 |
| BsmAI | GTCTC | 1 cut(s) | 229 |
| BsmFI | GGGAC | 3 cut(s) | 304, 460, 508 |
| BsnI | GGCC | 4 cut(s) | 5, 189, 193, 215 |
| Bso31I | GGTCTC | 1 cut(s) | 229 |
| Bsp1286I | GDGCHC | 2 cut(s) | 646, 655 |
| Bsp13I | TCCGGA | 1 cut(s) | 169 |
| Bsp143I | GATC | 3 cut(s) | 143, 482, 625 |
| Bsp19I | CCATGG | 1 cut(s) | 105 |
| BspANI | GGCC | 4 cut(s) | 5, 189, 193, 215 |
| BspCNI | CTCAG | 2 cut(s) | 399, 648 |
| BspEI | TCCGGA | 1 cut(s) | 169 |
| BspFNI | CGCG | 2 cut(s) | 149, 250 |
| BspLI | GGNNCC | 2 cut(s) | 71, 448 |
| BspMAI | CTGCAG | 1 cut(s) | 459 |
| BspPI | GGATC | 2 cut(s) | 138, 490 |
| BspQI | GCTCTTC | 1 cut(s) | 395 |
| BspTNI | GGTCTC | 1 cut(s) | 229 |
| BsrBI | CCGCTC | 1 cut(s) | 491 |
| BsrFI | RCCGGY | 1 cut(s) | 189 |
| BsrI | ACTGG | 2 cut(s) | 179, 448 |
| BssAI | RCCGGY | 1 cut(s) | 189 |
| BssECI | CCNNGG | 4 cut(s) | 105, 147, 159, 248 |
| BssMI | GATC | 3 cut(s) | 143, 482, 625 |
| BssNI | GRCGYC | 2 cut(s) | 495, 687 |
| BssT1I | CCWWGG | 1 cut(s) | 105 |
| Bst6I | CTCTTC | 3 cut(s) | 386, 395, 699 |
| BstACI | GRCGYC | 2 cut(s) | 495, 687 |
| BstC8I | GCNNGC | 6 cut(s) | 7, 65, 191, 565, 651, 655 |
| BstDEI | CTNAG | 2 cut(s) | 407, 635 |
| BstDSI | CCRYGG | 3 cut(s) | 105, 147, 248 |
| BstFNI | CGCG | 2 cut(s) | 149, 250 |
| BstH2I | RGCGCY | 1 cut(s) | 570 |
| BstHHI | GCGC | 3 cut(s) | 63, 560, 569 |
| BstKTI | GATC | 3 cut(s) | 146, 485, 628 |
| BstMAI | GTCTC | 1 cut(s) | 229 |
| BstMBI | GATC | 3 cut(s) | 143, 482, 625 |
| BstMCI | CGRYCG | 2 cut(s) | 190, 194 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 45, 195, 253, 555, 564, 566, 650 |
| BstSCI | CCNGG | 2 cut(s) | 215, 227 |
| BstSFI | CTRYAG | 1 cut(s) | 455 |
| BstSLI | GKGCMC | 1 cut(s) | 646 |
| BstUI | CGCG | 2 cut(s) | 149, 250 |
| BstV1I | GCAGC | 4 cut(s) | 256, 441, 542, 547 |
| BstV2I | GAAGAC | 1 cut(s) | 175 |
| BstZI | CGGCCG | 2 cut(s) | 187, 191 |
| Bsu36I | CCTNAGG | 1 cut(s) | 407 |
| BsuRI | GGCC | 4 cut(s) | 5, 189, 193, 215 |
| BtgI | CCRYGG | 3 cut(s) | 105, 147, 248 |
| BtgZI | GCGATG | 1 cut(s) | 564 |
| BtsI | GCAGTG | 1 cut(s) | 22 |
| BtsIMutI | CAGTG | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 6 cut(s) | 7, 65, 191, 565, 651, 655 |
| CaiI | CAGNNNCTG | 1 cut(s) | 720 |
| CfoI | GCGC | 3 cut(s) | 63, 560, 569 |
| Cfr10I | RCCGGY | 1 cut(s) | 189 |
| Cfr13I | GGNCC | 1 cut(s) | 447 |
| Cfr42I | CCGCGG | 2 cut(s) | 150, 251 |
| Csp6I | GTAC | 1 cut(s) | 337 |
| CviAII | CATG | 1 cut(s) | 106 |
| CviQI | GTAC | 1 cut(s) | 337 |
| DdeI | CTNAG | 2 cut(s) | 407, 635 |
| DpnI | GATC | 3 cut(s) | 145, 484, 627 |
| DpnII | GATC | 3 cut(s) | 143, 482, 625 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 179 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 179 |
| EaeI | YGGCCR | 3 cut(s) | 187, 191, 213 |
| EagI | CGGCCG | 2 cut(s) | 187, 191 |
| Eam1104I | CTCTTC | 3 cut(s) | 386, 395, 699 |
| EarI | CTCTTC | 3 cut(s) | 386, 395, 699 |
| EciI | GGCGGA | 2 cut(s) | 247, 368 |
| Ecl136II | GAGCTC | 1 cut(s) | 653 |
| EclXI | CGGCCG | 2 cut(s) | 187, 191 |
| Eco130I | CCWWGG | 1 cut(s) | 105 |
| Eco24I | GRGCYC | 1 cut(s) | 655 |
| Eco31I | GGTCTC | 1 cut(s) | 229 |
| Eco47I | GGWCC | 1 cut(s) | 447 |
| Eco52I | CGGCCG | 2 cut(s) | 187, 191 |
| Eco53kI | GAGCTC | 1 cut(s) | 653 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco81I | CCTNAGG | 1 cut(s) | 407 |
| EcoICRI | GAGCTC | 1 cut(s) | 653 |
| EcoT14I | CCWWGG | 1 cut(s) | 105 |
| EcoT38I | GRGCYC | 1 cut(s) | 655 |
| ErhI | CCWWGG | 1 cut(s) | 105 |
| FaeI | CATG | 1 cut(s) | 109 |
| FaiI | YATR | 2 cut(s) | 107, 667 |
| FaqI | GGGAC | 3 cut(s) | 304, 460, 508 |
| FatI | CATG | 1 cut(s) | 105 |
| FauI | CCCGC | 1 cut(s) | 556 |
| FblI | GTMKAC | 1 cut(s) | 684 |
| FriOI | GRGCYC | 1 cut(s) | 655 |
| FseI | GGCCGGCC | 1 cut(s) | 193 |
| FspBI | CTAG | 1 cut(s) | 29 |
| GlaI | GCGC | 3 cut(s) | 62, 559, 568 |
| HaeII | RGCGCY | 1 cut(s) | 570 |
| HaeIII | GGCC | 4 cut(s) | 5, 189, 193, 215 |
| HapII | CCGG | 6 cut(s) | 170, 190, 216, 228, 283, 532 |
| HhaI | GCGC | 3 cut(s) | 63, 560, 569 |
| Hin1I | GRCGYC | 2 cut(s) | 495, 687 |
| Hin1II | CATG | 1 cut(s) | 109 |
| Hin6I | GCGC | 3 cut(s) | 61, 558, 567 |
| HinP1I | GCGC | 3 cut(s) | 61, 558, 567 |
| HincII | GTYRAC | 1 cut(s) | 685 |
| HindII | GTYRAC | 1 cut(s) | 685 |
| HinfI | GANTC | 2 cut(s) | 631, 707 |
| HpaII | CCGG | 6 cut(s) | 170, 190, 216, 228, 283, 532 |
| HphI | GGTGA | 4 cut(s) | 289, 337, 629, 635 |
| Hpy166II | GTNNAC | 3 cut(s) | 593, 644, 685 |
| Hpy188I | TCNGA | 3 cut(s) | 163, 630, 722 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 439, 486, 582 |
| Hpy8I | GTNNAC | 3 cut(s) | 593, 644, 685 |
| Hpy99I | CGWCG | 8 cut(s) | 92, 95, 206, 268, 298, 680, 689, 692 |
| HpyCH4IV | ACGT | 4 cut(s) | 204, 296, 495, 687 |
| HpyCH4V | TGCA | 3 cut(s) | 9, 457, 644 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 45, 195, 253, 555, 564, 566, 650 |
| HpyF3I | CTNAG | 2 cut(s) | 407, 635 |
| HpySE526I | ACGT | 4 cut(s) | 204, 296, 495, 687 |
| Hsp92I | GRCGYC | 2 cut(s) | 495, 687 |
| Hsp92II | CATG | 1 cut(s) | 109 |
| HspAI | GCGC | 3 cut(s) | 61, 558, 567 |
| Kpn2I | TCCGGA | 1 cut(s) | 169 |
| KroI | GCCGGC | 1 cut(s) | 189 |
| KroNI | GCCGGC | 1 cut(s) | 191 |
| KspI | CCGCGG | 2 cut(s) | 150, 251 |
| Kzo9I | GATC | 3 cut(s) | 143, 482, 625 |
| LguI | GCTCTTC | 1 cut(s) | 395 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| Lsp1109I | GCAGC | 4 cut(s) | 256, 441, 542, 547 |
| LweI | GCATC | 1 cut(s) | 88 |
| MaeI | CTAG | 1 cut(s) | 29 |
| MaeII | ACGT | 4 cut(s) | 204, 296, 495, 687 |
| MalI | GATC | 3 cut(s) | 145, 484, 627 |
| MbiI | CCGCTC | 1 cut(s) | 491 |
| MboI | GATC | 3 cut(s) | 143, 482, 625 |
| MfeI | CAATTG | 1 cut(s) | 12 |
| MhlI | GDGCHC | 2 cut(s) | 646, 655 |
| MluCI | AATT | 1 cut(s) | 12 |
| MlyI | GAGTC | 1 cut(s) | 716 |
| MroI | TCCGGA | 1 cut(s) | 169 |
| MroNI | GCCGGC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 372 |
| MspA1I | CMGCKG | 3 cut(s) | 149, 250, 639 |
| MspI | CCGG | 6 cut(s) | 170, 190, 216, 228, 283, 532 |
| MspR9I | CCNGG | 2 cut(s) | 217, 229 |
| MunI | CAATTG | 1 cut(s) | 12 |
| MvnI | CGCG | 2 cut(s) | 149, 250 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 45, 195, 253, 555, 564, 566, 650 |
| NaeI | GCCGGC | 1 cut(s) | 191 |
| NciI | CCSGG | 2 cut(s) | 217, 229 |
| NcoI | CCATGG | 1 cut(s) | 105 |
| NdeII | GATC | 3 cut(s) | 143, 482, 625 |
| NgoMIV | GCCGGC | 1 cut(s) | 189 |
| NlaIII | CATG | 1 cut(s) | 109 |
| NlaIV | GGNNCC | 2 cut(s) | 71, 448 |
| NmeAIII | GCCGAG | 1 cut(s) | 219 |
| PciSI | GCTCTTC | 1 cut(s) | 395 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 681, 684 |
| PdiI | GCCGGC | 1 cut(s) | 191 |
| PfeI | GAWTC | 1 cut(s) | 631 |
| PleI | GAGTC | 1 cut(s) | 715 |
| PpsI | GAGTC | 1 cut(s) | 715 |
| Psp124BI | GAGCTC | 1 cut(s) | 655 |
| PspN4I | GGNNCC | 2 cut(s) | 71, 448 |
| PspPI | GGNCC | 1 cut(s) | 447 |
| PstI | CTGCAG | 1 cut(s) | 459 |
| PstNI | CAGNNNCTG | 1 cut(s) | 720 |
| RigI | GGCCGGCC | 1 cut(s) | 193 |
| RsaI | GTAC | 1 cut(s) | 338 |
| RsaNI | GTAC | 1 cut(s) | 337 |
| SacI | GAGCTC | 1 cut(s) | 655 |
| SacII | CCGCGG | 2 cut(s) | 150, 251 |
| SalI | GTCGAC | 1 cut(s) | 683 |
| SapI | GCTCTTC | 1 cut(s) | 395 |
| SaqAI | TTAA | 1 cut(s) | 372 |
| Sau3AI | GATC | 3 cut(s) | 143, 482, 625 |
| Sau96I | GGNCC | 1 cut(s) | 447 |
| SchI | GAGTC | 1 cut(s) | 716 |
| ScrFI | CCNGG | 2 cut(s) | 217, 229 |
| SduI | GDGCHC | 2 cut(s) | 646, 655 |
| SfaNI | GCATC | 1 cut(s) | 88 |
| SfcI | CTRYAG | 1 cut(s) | 455 |
| Sfr303I | CCGCGG | 2 cut(s) | 150, 251 |
| SgrBI | CCGCGG | 2 cut(s) | 150, 251 |
| SinI | GGWCC | 1 cut(s) | 447 |
| Sse9I | AATT | 1 cut(s) | 12 |
| SspMI | CTAG | 1 cut(s) | 29 |
| SstI | GAGCTC | 1 cut(s) | 655 |
| StyD4I | CCNGG | 2 cut(s) | 215, 227 |
| StyI | CCWWGG | 1 cut(s) | 105 |
| TaiI | ACGT | 4 cut(s) | 207, 299, 498, 690 |
| TaqI | TCGA | 5 cut(s) | 300, 678, 684, 690, 702 |
| TasI | AATT | 1 cut(s) | 12 |
| TauI | GCSGC | 5 cut(s) | 104, 119, 122, 250, 612 |
| TfiI | GAWTC | 1 cut(s) | 631 |
| Tru1I | TTAA | 1 cut(s) | 372 |
| Tru9I | TTAA | 1 cut(s) | 372 |
| TscAI | CASTG | 1 cut(s) | 29 |
| TseI | GCWGC | 5 cut(s) | 244, 454, 555, 560, 714 |
| TspDTI | ATGAA | 1 cut(s) | 688 |
| TspRI | CASTG | 1 cut(s) | 29 |
| VneI | GTGCAC | 1 cut(s) | 642 |
| VpaK11BI | GGWCC | 1 cut(s) | 447 |
| XmiI | GTMKAC | 1 cut(s) | 684 |
| XspI | CTAG | 1 cut(s) | 29 |
| ZraI | GACGTC | 2 cut(s) | 496, 688 |