ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1809 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1374 |
| AatII | GACGTC | 1 cut(s) | 522 |
| Acc65I | GGTACC | 1 cut(s) | 988 |
| AccB1I | GGYRCC | 3 cut(s) | 793, 988, 1570 |
| AccI | GTMKAC | 2 cut(s) | 157, 1994 |
| AccII | CGCG | 2 cut(s) | 501, 2295 |
| AccIII | TCCGGA | 1 cut(s) | 2631 |
| AciI | CCGC | 9 cut(s) | 742, 910, 1121, 1124, 1829, 1975, 2324, 2669, 2760 |
| AclI | AACGTT | 1 cut(s) | 2122 |
| AclWI | GGATC | 5 cut(s) | 272, 340, 2469, 2732, 2745 |
| AcoI | YGGCCR | 1 cut(s) | 442 |
| AcsI | RAATTY | 5 cut(s) | 934, 2129, 2138, 2276, 2626 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AcyI | GRCGYC | 3 cut(s) | 519, 2425, 2784 |
| AfaI | GTAC | 5 cut(s) | 375, 869, 990, 1177, 2554 |
| AfeI | AGCGCT | 1 cut(s) | 539 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 202, 687, 909, 1047, 2034, 2041 |
| AflII | CTTAAG | 4 cut(s) | 161, 268, 1190, 1849 |
| AflIII | ACRYGT | 6 cut(s) | 499, 924, 1148, 1617, 2309, 2824 |
| AgeI | ACCGGT | 1 cut(s) | 917 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2313 |
| AjiI | CACGTC | 4 cut(s) | 925, 1618, 1992, 2827 |
| AjnI | CCWGG | 3 cut(s) | 69, 101, 1684 |
| AleI | CACNNNNGTG | 1 cut(s) | 2814 |
| Alw26I | GTCTC | 7 cut(s) | 244, 449, 820, 943, 1031, 1599, 1753 |
| AlwI | GGATC | 5 cut(s) | 272, 340, 2469, 2732, 2745 |
| Ama87I | CYCGRG | 2 cut(s) | 1171, 2028 |
| Aor13HI | TCCGGA | 1 cut(s) | 2631 |
| Aor51HI | AGCGCT | 1 cut(s) | 539 |
| AoxI | GGCC | 9 cut(s) | 193, 385, 442, 1463, 1845, 1890, 1924, 2382, 2693 |
| ApaI | GGGCCC | 1 cut(s) | 1928 |
| ApeKI | GCWGC | 3 cut(s) | 1436, 1717, 1826 |
| ApoI | RAATTY | 5 cut(s) | 934, 2129, 2138, 2276, 2626 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1901, 1933 |
| AseI | ATTAAT | 3 cut(s) | 561, 1277, 2520 |
| AsiGI | ACCGGT | 1 cut(s) | 917 |
| Asp718I | GGTACC | 1 cut(s) | 988 |
| AspA2I | CCTAGG | 1 cut(s) | 1721 |
| AspLEI | GCGC | 2 cut(s) | 540, 2295 |
| AsuC2I | CCSGG | 3 cut(s) | 1022, 1172, 1173 |
| AvaI | CYCGRG | 2 cut(s) | 1171, 2028 |
| AvrII | CCTAGG | 1 cut(s) | 1721 |
| BaeGI | GKGCMC | 2 cut(s) | 1928, 2494 |
| BalI | TGGCCA | 1 cut(s) | 444 |
| BamHI | GGATCC | 1 cut(s) | 2737 |
| BanI | GGYRCC | 3 cut(s) | 793, 988, 1570 |
| BanII | GRGCYC | 3 cut(s) | 1656, 1928, 2212 |
| BbsI | GAAGAC | 2 cut(s) | 12, 514 |
| BbvCI | CCTCAGC | 1 cut(s) | 128 |
| BbvI | GCAGC | 3 cut(s) | 1448, 1729, 1813 |
| BccI | CCATC | 9 cut(s) | 690, 753, 1075, 1280, 1448, 1670, 2078, 2330, 2738 |
| BceAI | ACGGC | 3 cut(s) | 3, 2571, 2708 |
| BciT130I | CCWGG | 3 cut(s) | 71, 103, 1686 |
| BciVI | GTATCC | 1 cut(s) | 991 |
| BclI | TGATCA | 2 cut(s) | 631, 2059 |
| BcnI | CCSGG | 3 cut(s) | 1022, 1172, 1173 |
| BcoDI | GTCTC | 7 cut(s) | 244, 449, 820, 943, 1031, 1599, 1753 |
| BfaI | CTAG | 7 cut(s) | 261, 828, 1065, 1722, 1904, 1929, 2049 |
| BfmI | CTRYAG | 1 cut(s) | 1440 |
| BfoI | RGCGCY | 1 cut(s) | 541 |
| BfrI | CTTAAG | 4 cut(s) | 161, 268, 1190, 1849 |
| BfuI | GTATCC | 1 cut(s) | 991 |
| BglII | AGATCT | 2 cut(s) | 165, 1011 |
| BisI | GCNGC | 5 cut(s) | 1122, 1437, 1718, 1827, 2761 |
| BlnI | CCTAGG | 1 cut(s) | 1721 |
| BlsI | GCNGC | 5 cut(s) | 1123, 1438, 1719, 1828, 2762 |
| BmcAI | AGTACT | 1 cut(s) | 869 |
| Bme1390I | CCNGG | 6 cut(s) | 71, 103, 1022, 1172, 1173, 1686 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2313 |
| BmeT110I | CYCGRG | 2 cut(s) | 1171, 2028 |
| BmgBI | CACGTC | 4 cut(s) | 925, 1618, 1992, 2827 |
| BmrFI | CCNGG | 6 cut(s) | 71, 103, 1022, 1172, 1173, 1686 |
| BmrI | ACTGGG | 2 cut(s) | 1713, 2664 |
| BmsI | GCATC | 3 cut(s) | 307, 1533, 1873 |
| BmuI | ACTGGG | 2 cut(s) | 1713, 2664 |
| BpiI | GAAGAC | 2 cut(s) | 12, 514 |
| BpmI | CTGGAG | 1 cut(s) | 2284 |
| Bpu10I | CCTNAGC | 3 cut(s) | 128, 1650, 2436 |
| BpuEI | CTTGAG | 2 cut(s) | 2099, 2171 |
| BpuMI | CCSGG | 3 cut(s) | 1022, 1172, 1173 |
| BsaAI | YACGTR | 2 cut(s) | 2312, 2495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 344 |
| BsaHI | GRCGYC | 3 cut(s) | 519, 2425, 2784 |
| BsaI | GGTCTC | 2 cut(s) | 1031, 1599 |
| BsaJI | CCNNGG | 9 cut(s) | 281, 984, 994, 1171, 1588, 1684, 1721, 1787, 2102 |
| BsaWI | WCCGGW | 3 cut(s) | 796, 917, 2631 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 202, 687, 909, 1047, 2034, 2041 |
| Bse118I | RCCGGY | 1 cut(s) | 917 |
| Bse1I | ACTGG | 7 cut(s) | 883, 1041, 1572, 1708, 2267, 2358, 2659 |
| Bse3DI | GCAATG | 1 cut(s) | 2375 |
| Bse8I | GATNNNNATC | 1 cut(s) | 344 |
| BseAI | TCCGGA | 1 cut(s) | 2631 |
| BseBI | CCWGG | 3 cut(s) | 71, 103, 1686 |
| BseDI | CCNNGG | 9 cut(s) | 281, 984, 994, 1171, 1588, 1684, 1721, 1787, 2102 |
| BseGI | GGATG | 8 cut(s) | 1030, 1291, 1501, 1548, 1681, 2070, 2617, 2713 |
| BseJI | GATNNNNATC | 1 cut(s) | 344 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 202, 687, 909, 1047, 2034, 2041 |
| BseMI | GCAATG | 1 cut(s) | 2375 |
| BseMII | CTCAG | 8 cut(s) | 142, 399, 920, 1599, 1641, 1719, 2613, 2826 |
| BseNI | ACTGG | 7 cut(s) | 883, 1041, 1572, 1708, 2267, 2358, 2659 |
| BseRI | GAGGAG | 3 cut(s) | 232, 425, 1976 |
| BseSI | GKGCMC | 2 cut(s) | 1928, 2494 |
| BseXI | GCAGC | 3 cut(s) | 1448, 1729, 1813 |
| Bsh1236I | CGCG | 2 cut(s) | 501, 2295 |
| BshFI | GGCC | 9 cut(s) | 195, 387, 444, 1465, 1847, 1892, 1926, 2384, 2695 |
| BshNI | GGYRCC | 3 cut(s) | 793, 988, 1570 |
| BshTI | ACCGGT | 1 cut(s) | 917 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1171, 2028 |
| BsiSI | CCGG | 7 cut(s) | 797, 918, 1022, 1172, 2021, 2035, 2632 |
| BslFI | GGGAC | 4 cut(s) | 318, 1922, 2326, 2468 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 202, 687, 909, 1047, 2034, 2041 |
| BsmAI | GTCTC | 7 cut(s) | 244, 449, 820, 943, 1031, 1599, 1753 |
| BsmBI | CGTCTC | 1 cut(s) | 943 |
| BsmFI | GGGAC | 4 cut(s) | 318, 1922, 2326, 2468 |
| BsmI | GAATGC | 1 cut(s) | 2518 |
| BsnI | GGCC | 9 cut(s) | 195, 387, 444, 1465, 1847, 1892, 1926, 2384, 2695 |
| Bso31I | GGTCTC | 2 cut(s) | 1031, 1599 |
| BsoBI | CYCGRG | 2 cut(s) | 1171, 2028 |
| Bsp120I | GGGCCC | 1 cut(s) | 1924 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1656, 1928, 2212, 2494 |
| Bsp13I | TCCGGA | 1 cut(s) | 2631 |
| Bsp19I | CCATGG | 1 cut(s) | 1787 |
| BspACI | CCGC | 9 cut(s) | 742, 910, 1121, 1124, 1829, 1975, 2324, 2669, 2760 |
| BspANI | GGCC | 9 cut(s) | 195, 387, 444, 1465, 1847, 1892, 1926, 2384, 2695 |
| BspCNI | CTCAG | 8 cut(s) | 141, 400, 919, 1600, 1642, 1720, 2614, 2827 |
| BspEI | TCCGGA | 1 cut(s) | 2631 |
| BspFNI | CGCG | 2 cut(s) | 501, 2295 |
| BspHI | TCATGA | 1 cut(s) | 862 |
| BspPI | GGATC | 5 cut(s) | 272, 340, 2469, 2732, 2745 |
| BspQI | GCTCTTC | 1 cut(s) | 2059 |
| BspT107I | GGYRCC | 3 cut(s) | 793, 988, 1570 |
| BspTI | CTTAAG | 4 cut(s) | 161, 268, 1190, 1849 |
| BspTNI | GGTCTC | 2 cut(s) | 1031, 1599 |
| BsrDI | GCAATG | 1 cut(s) | 2375 |
| BsrFI | RCCGGY | 1 cut(s) | 917 |
| BsrI | ACTGG | 7 cut(s) | 883, 1041, 1572, 1708, 2267, 2358, 2659 |
| BssAI | RCCGGY | 1 cut(s) | 917 |
| BssECI | CCNNGG | 9 cut(s) | 281, 984, 994, 1171, 1588, 1684, 1721, 1787, 2102 |
| BssNI | GRCGYC | 3 cut(s) | 519, 2425, 2784 |
| BssT1I | CCWWGG | 5 cut(s) | 281, 994, 1588, 1721, 1787 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 103, 1686 |
| Bst4CI | ACNGT | 4 cut(s) | 872, 979, 1736, 2770 |
| Bst6I | CTCTTC | 4 cut(s) | 2059, 2568, 2617, 2723 |
| BstACI | GRCGYC | 3 cut(s) | 519, 2425, 2784 |
| BstAFI | CTTAAG | 4 cut(s) | 161, 268, 1190, 1849 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1543 |
| BstBAI | YACGTR | 2 cut(s) | 2312, 2495 |
| BstC8I | GCNNGC | 1 cut(s) | 2382 |
| BstDSI | CCRYGG | 1 cut(s) | 1787 |
| BstEII | GGTNACC | 1 cut(s) | 1679 |
| BstF5I | GGATG | 8 cut(s) | 1030, 1291, 1501, 1548, 1681, 2070, 2617, 2713 |
| BstFNI | CGCG | 2 cut(s) | 501, 2295 |
| BstH2I | RGCGCY | 1 cut(s) | 541 |
| BstHHI | GCGC | 2 cut(s) | 540, 2295 |
| BstMAI | GTCTC | 7 cut(s) | 244, 449, 820, 943, 1031, 1599, 1753 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 535, 1543, 2381, 2692 |
| BstNI | CCWGG | 3 cut(s) | 71, 103, 1686 |
| BstNSI | RCATGY | 2 cut(s) | 1152, 2417 |
| BstPI | GGTNACC | 1 cut(s) | 1679 |
| BstSCI | CCNGG | 6 cut(s) | 69, 101, 1020, 1170, 1171, 1684 |
| BstSFI | CTRYAG | 1 cut(s) | 1440 |
| BstSLI | GKGCMC | 2 cut(s) | 1928, 2494 |
| BstUI | CGCG | 2 cut(s) | 501, 2295 |
| BstV1I | GCAGC | 3 cut(s) | 1448, 1729, 1813 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 514 |
| BstX2I | RGATCY | 5 cut(s) | 165, 264, 1011, 2461, 2737 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1567, 1692 |
| BstYI | RGATCY | 5 cut(s) | 165, 264, 1011, 2461, 2737 |
| BsuI | GTATCC | 1 cut(s) | 991 |
| BsuRI | GGCC | 9 cut(s) | 195, 387, 444, 1465, 1847, 1892, 1926, 2384, 2695 |
| BtgI | CCRYGG | 1 cut(s) | 1787 |
| BtrI | CACGTC | 4 cut(s) | 925, 1618, 1992, 2827 |
| BtsCI | GGATG | 8 cut(s) | 1030, 1291, 1501, 1548, 1681, 2070, 2617, 2713 |
| BtsIMutI | CAGTG | 1 cut(s) | 2365 |
| Cac8I | GCNNGC | 1 cut(s) | 2382 |
| CciI | TCATGA | 1 cut(s) | 862 |
| CfoI | GCGC | 2 cut(s) | 540, 2295 |
| Cfr10I | RCCGGY | 1 cut(s) | 917 |
| Cfr9I | CCCGGG | 1 cut(s) | 1171 |
| CseI | GACGC | 3 cut(s) | 490, 2414, 2792 |
| Csp6I | GTAC | 5 cut(s) | 374, 868, 989, 1176, 2553 |
| CspAI | ACCGGT | 1 cut(s) | 917 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1936, 1971 |
| CviQI | GTAC | 5 cut(s) | 374, 868, 989, 1176, 2553 |
| DraI | TTTAAA | 3 cut(s) | 1428, 2128, 2289 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1374 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2313 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1374 |
| EaeI | YGGCCR | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 4 cut(s) | 2059, 2568, 2617, 2723 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2313 |
| EarI | CTCTTC | 4 cut(s) | 2059, 2568, 2617, 2723 |
| EciI | GGCGGA | 2 cut(s) | 1139, 1964 |
| Eco130I | CCWWGG | 5 cut(s) | 281, 994, 1588, 1721, 1787 |
| Eco24I | GRGCYC | 3 cut(s) | 1656, 1928, 2212 |
| Eco31I | GGTCTC | 2 cut(s) | 1031, 1599 |
| Eco32I | GATATC | 1 cut(s) | 1240 |
| Eco47III | AGCGCT | 1 cut(s) | 539 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco88I | CYCGRG | 2 cut(s) | 1171, 2028 |
| Eco91I | GGTNACC | 1 cut(s) | 1679 |
| EcoO109I | RGGNCCY | 6 cut(s) | 278, 332, 725, 1845, 1925, 2340 |
| EcoO65I | GGTNACC | 1 cut(s) | 1679 |
| EcoRII | CCWGG | 3 cut(s) | 69, 101, 1684 |
| EcoRV | GATATC | 1 cut(s) | 1240 |
| EcoT14I | CCWWGG | 5 cut(s) | 281, 994, 1588, 1721, 1787 |
| EcoT22I | ATGCAT | 1 cut(s) | 1881 |
| EcoT38I | GRGCYC | 3 cut(s) | 1656, 1928, 2212 |
| ErhI | CCWWGG | 5 cut(s) | 281, 994, 1588, 1721, 1787 |
| Esp3I | CGTCTC | 1 cut(s) | 943 |
| FaqI | GGGAC | 4 cut(s) | 318, 1922, 2326, 2468 |
| FauI | CCCGC | 1 cut(s) | 903 |
| FbaI | TGATCA | 2 cut(s) | 631, 2059 |
| FblI | GTMKAC | 2 cut(s) | 157, 1994 |
| Fnu4HI | GCNGC | 5 cut(s) | 1122, 1437, 1718, 1827, 2761 |
| FokI | GGATG | 8 cut(s) | 1037, 1298, 1508, 1555, 1688, 2057, 2604, 2720 |
| FriOI | GRGCYC | 3 cut(s) | 1656, 1928, 2212 |
| Fsp4HI | GCNGC | 5 cut(s) | 1122, 1437, 1718, 1827, 2761 |
| FspBI | CTAG | 7 cut(s) | 261, 828, 1065, 1722, 1904, 1929, 2049 |
| GlaI | GCGC | 2 cut(s) | 539, 2294 |
| GluI | GCNGC | 5 cut(s) | 1122, 1437, 1718, 1827, 2761 |
| GsuI | CTGGAG | 1 cut(s) | 2284 |
| HaeII | RGCGCY | 1 cut(s) | 541 |
| HaeIII | GGCC | 9 cut(s) | 195, 387, 444, 1465, 1847, 1892, 1926, 2384, 2695 |
| HapII | CCGG | 7 cut(s) | 797, 918, 1022, 1172, 2021, 2035, 2632 |
| HgaI | GACGC | 3 cut(s) | 490, 2414, 2792 |
| HhaI | GCGC | 2 cut(s) | 540, 2295 |
| Hin1I | GRCGYC | 3 cut(s) | 519, 2425, 2784 |
| Hin6I | GCGC | 2 cut(s) | 538, 2293 |
| HinP1I | GCGC | 2 cut(s) | 538, 2293 |
| HincII | GTYRAC | 7 cut(s) | 28, 422, 1060, 1347, 1422, 1739, 2318 |
| HindII | GTYRAC | 7 cut(s) | 28, 422, 1060, 1347, 1422, 1739, 2318 |
| HinfI | GANTC | 4 cut(s) | 74, 809, 2031, 2156 |
| HpaI | GTTAAC | 1 cut(s) | 28 |
| HpaII | CCGG | 7 cut(s) | 797, 918, 1022, 1172, 2021, 2035, 2632 |
| Hpy99I | CGWCG | 4 cut(s) | 2505, 2753, 2792, 2831 |
| HpyCH4III | ACNGT | 4 cut(s) | 872, 979, 1736, 2770 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 535, 1543, 2381, 2692 |
| Hsp92I | GRCGYC | 3 cut(s) | 519, 2425, 2784 |
| HspAI | GCGC | 2 cut(s) | 538, 2293 |
| KflI | GGGWCCC | 2 cut(s) | 332, 2340 |
| Kpn2I | TCCGGA | 1 cut(s) | 2631 |
| KpnI | GGTACC | 1 cut(s) | 992 |
| Ksp22I | TGATCA | 2 cut(s) | 631, 2059 |
| KspAI | GTTAAC | 1 cut(s) | 28 |
| LguI | GCTCTTC | 1 cut(s) | 2059 |
| LmnI | GCTCC | 5 cut(s) | 1259, 1321, 1338, 1645, 2410 |
| Lsp1109I | GCAGC | 3 cut(s) | 1448, 1729, 1813 |
| LweI | GCATC | 3 cut(s) | 307, 1533, 1873 |
| MaeI | CTAG | 7 cut(s) | 261, 828, 1065, 1722, 1904, 1929, 2049 |
| MaeIII | GTNAC | 8 cut(s) | 920, 1166, 1376, 1679, 2225, 2360, 2650, 2780 |
| MfeI | CAATTG | 1 cut(s) | 1763 |
| MflI | RGATCY | 5 cut(s) | 165, 264, 1011, 2461, 2737 |
| MhlI | GDGCHC | 4 cut(s) | 1656, 1928, 2212, 2494 |
| MlsI | TGGCCA | 1 cut(s) | 444 |
| MluI | ACGCGT | 1 cut(s) | 499 |
| MluNI | TGGCCA | 1 cut(s) | 444 |
| MlyI | GAGTC | 1 cut(s) | 2040 |
| MmeI | TCCRAC | 5 cut(s) | 1593, 1609, 2378, 2483, 2521 |
| Mox20I | TGGCCA | 1 cut(s) | 444 |
| Mph1103I | ATGCAT | 1 cut(s) | 1881 |
| MroI | TCCGGA | 1 cut(s) | 2631 |
| MscI | TGGCCA | 1 cut(s) | 444 |
| MslI | CAYNNNNRTG | 2 cut(s) | 204, 2814 |
| Msp20I | TGGCCA | 1 cut(s) | 444 |
| MspA1I | CMGCKG | 2 cut(s) | 910, 2760 |
| MspCI | CTTAAG | 4 cut(s) | 161, 268, 1190, 1849 |
| MspI | CCGG | 7 cut(s) | 797, 918, 1022, 1172, 2021, 2035, 2632 |
| MspR9I | CCNGG | 6 cut(s) | 71, 103, 1022, 1172, 1173, 1686 |
| MunI | CAATTG | 1 cut(s) | 1763 |
| Mva1269I | GAATGC | 1 cut(s) | 2518 |
| MvaI | CCWGG | 3 cut(s) | 71, 103, 1686 |
| MvnI | CGCG | 2 cut(s) | 501, 2295 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 535, 1543, 2381, 2692 |
| NciI | CCSGG | 3 cut(s) | 1022, 1172, 1173 |
| NcoI | CCATGG | 1 cut(s) | 1787 |
| NmeAIII | GCCGAG | 1 cut(s) | 2127 |
| NmuCI | GTSAC | 8 cut(s) | 920, 1166, 1376, 1679, 2225, 2360, 2650, 2780 |
| NsiI | ATGCAT | 1 cut(s) | 1881 |
| NspI | RCATGY | 2 cut(s) | 1152, 2417 |
| OliI | CACNNNNGTG | 1 cut(s) | 2814 |
| PagI | TCATGA | 1 cut(s) | 862 |
| PciI | ACATGT | 1 cut(s) | 1148 |
| PciSI | GCTCTTC | 1 cut(s) | 2059 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 42 |
| PctI | GAATGC | 1 cut(s) | 2518 |
| PfeI | GAWTC | 3 cut(s) | 74, 809, 2156 |
| PfoI | TCCNGGA | 1 cut(s) | 69 |
| PinAI | ACCGGT | 1 cut(s) | 917 |
| PkrI | GCNGC | 5 cut(s) | 1123, 1438, 1719, 1828, 2762 |
| PleI | GAGTC | 1 cut(s) | 2039 |
| PpsI | GAGTC | 1 cut(s) | 2039 |
| Ppu21I | YACGTR | 2 cut(s) | 2312, 2495 |
| PpuMI | RGGWCCY | 4 cut(s) | 278, 332, 725, 2340 |
| PscI | ACATGT | 1 cut(s) | 1148 |
| PshBI | ATTAAT | 3 cut(s) | 561, 1277, 2520 |
| PsiI | TTATAA | 1 cut(s) | 1809 |
| Psp1406I | AACGTT | 1 cut(s) | 2122 |
| Psp5II | RGGWCCY | 4 cut(s) | 278, 332, 725, 2340 |
| Psp6I | CCWGG | 3 cut(s) | 69, 101, 1684 |
| PspEI | GGTNACC | 1 cut(s) | 1679 |
| PspGI | CCWGG | 3 cut(s) | 69, 101, 1684 |
| PspOMI | GGGCCC | 1 cut(s) | 1924 |
| PspPPI | RGGWCCY | 4 cut(s) | 278, 332, 725, 2340 |
| PsuI | RGATCY | 5 cut(s) | 165, 264, 1011, 2461, 2737 |
| RsaI | GTAC | 5 cut(s) | 375, 869, 990, 1177, 2554 |
| RsaNI | GTAC | 5 cut(s) | 374, 868, 989, 1176, 2553 |
| RseI | CAYNNNNRTG | 2 cut(s) | 204, 2814 |
| SapI | GCTCTTC | 1 cut(s) | 2059 |
| SatI | GCNGC | 5 cut(s) | 1122, 1437, 1718, 1827, 2761 |
| ScaI | AGTACT | 1 cut(s) | 869 |
| SchI | GAGTC | 1 cut(s) | 2040 |
| ScrFI | CCNGG | 6 cut(s) | 71, 103, 1022, 1172, 1173, 1686 |
| SduI | GDGCHC | 4 cut(s) | 1656, 1928, 2212, 2494 |
| SfaNI | GCATC | 3 cut(s) | 307, 1533, 1873 |
| SfcI | CTRYAG | 1 cut(s) | 1440 |
| SmaI | CCCGGG | 1 cut(s) | 1173 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 204, 2814 |
| SmlI | CTYRAG | 6 cut(s) | 161, 268, 1190, 1849, 2078, 2150 |
| SmoI | CTYRAG | 6 cut(s) | 161, 268, 1190, 1849, 2078, 2150 |
| SsiI | CCGC | 9 cut(s) | 742, 910, 1121, 1124, 1829, 1975, 2324, 2669, 2760 |
| SspI | AATATT | 1 cut(s) | 2591 |
| SspMI | CTAG | 7 cut(s) | 261, 828, 1065, 1722, 1904, 1929, 2049 |
| StyD4I | CCNGG | 6 cut(s) | 69, 101, 1020, 1170, 1171, 1684 |
| StyI | CCWWGG | 5 cut(s) | 281, 994, 1588, 1721, 1787 |
| TaaI | ACNGT | 4 cut(s) | 872, 979, 1736, 2770 |
| TaqI | TCGA | 7 cut(s) | 344, 390, 569, 1053, 1242, 1268, 2829 |
| TaqII | GACCGA | 1 cut(s) | 1648 |
| TatI | WGTACW | 1 cut(s) | 867 |
| TauI | GCSGC | 2 cut(s) | 1124, 2763 |
| TfiI | GAWTC | 3 cut(s) | 74, 809, 2156 |
| TscAI | CASTG | 1 cut(s) | 2365 |
| TseFI | GTSAC | 8 cut(s) | 920, 1166, 1376, 1679, 2225, 2360, 2650, 2780 |
| TseI | GCWGC | 3 cut(s) | 1436, 1717, 1826 |
| Tsp45I | GTSAC | 8 cut(s) | 920, 1166, 1376, 1679, 2225, 2360, 2650, 2780 |
| TspGWI | ACGGA | 2 cut(s) | 1656, 2766 |
| TspMI | CCCGGG | 1 cut(s) | 1171 |
| TspRI | CASTG | 1 cut(s) | 2365 |
| Vha464I | CTTAAG | 4 cut(s) | 161, 268, 1190, 1849 |
| VspI | ATTAAT | 3 cut(s) | 561, 1277, 2520 |
| XapI | RAATTY | 5 cut(s) | 934, 2129, 2138, 2276, 2626 |
| XceI | RCATGY | 2 cut(s) | 1152, 2417 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |
| XmaI | CCCGGG | 1 cut(s) | 1171 |
| XmaJI | CCTAGG | 1 cut(s) | 1721 |
| XmiI | GTMKAC | 2 cut(s) | 157, 1994 |
| XspI | CTAG | 7 cut(s) | 261, 828, 1065, 1722, 1904, 1929, 2049 |
| ZraI | GACGTC | 1 cut(s) | 520 |
| ZrmI | AGTACT | 1 cut(s) | 869 |
| Zsp2I | ATGCAT | 1 cut(s) | 1881 |