Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 118 - 166 | 6.1e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 643 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 533 |
| AccBSI | CCGCTC | 1 cut(s) | 918 |
| AccIII | TCCGGA | 1 cut(s) | 1127 |
| AciI | CCGC | 3 cut(s) | 230, 803, 916 |
| AclWI | GGATC | 6 cut(s) | 71, 167, 180, 218, 363, 822 |
| AcsI | RAATTY | 2 cut(s) | 225, 829 |
| AcuI | CTGAAG | 2 cut(s) | 355, 380 |
| AfaI | GTAC | 1 cut(s) | 771 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| AgsI | TTSAA | 1 cut(s) | 886 |
| AjnI | CCWGG | 1 cut(s) | 1081 |
| AluBI | AGCT | 2 cut(s) | 203, 420 |
| AluI | AGCT | 2 cut(s) | 203, 420 |
| Alw21I | GWGCWC | 1 cut(s) | 1048 |
| Alw26I | GTCTC | 2 cut(s) | 294, 396 |
| AlwI | GGATC | 6 cut(s) | 71, 167, 180, 218, 363, 822 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 89 |
| Aor13HI | TCCGGA | 1 cut(s) | 1127 |
| AoxI | GGCC | 1 cut(s) | 785 |
| ApeKI | GCWGC | 3 cut(s) | 139, 217, 776 |
| ApoI | RAATTY | 2 cut(s) | 225, 829 |
| AspA2I | CCTAGG | 1 cut(s) | 931 |
| AsuHPI | GGTGA | 2 cut(s) | 646, 755 |
| AvrII | CCTAGG | 1 cut(s) | 931 |
| BamHI | GGATCC | 1 cut(s) | 172 |
| BanI | GGYRCC | 1 cut(s) | 643 |
| BanII | GRGCYC | 2 cut(s) | 1127, 1141 |
| BauI | CACGAG | 1 cut(s) | 919 |
| BbsI | GAAGAC | 1 cut(s) | 943 |
| Bbv12I | GWGCWC | 1 cut(s) | 1048 |
| BbvI | GCAGC | 3 cut(s) | 126, 204, 788 |
| BccI | CCATC | 7 cut(s) | 155, 247, 725, 757, 902, 1114, 1149 |
| BciT130I | CCWGG | 1 cut(s) | 1083 |
| BclI | TGATCA | 2 cut(s) | 130, 516 |
| BcoDI | GTCTC | 2 cut(s) | 294, 396 |
| BfaI | CTAG | 3 cut(s) | 653, 711, 932 |
| BfmI | CTRYAG | 1 cut(s) | 905 |
| BisI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| BlnI | CCTAGG | 1 cut(s) | 931 |
| BlpI | GCTNAGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 4 cut(s) | 141, 219, 778, 805 |
| Bme1390I | CCNGG | 1 cut(s) | 1083 |
| BmiI | GGNNCC | 5 cut(s) | 174, 186, 525, 645, 1126 |
| BmrFI | CCNGG | 1 cut(s) | 1083 |
| BmsI | GCATC | 2 cut(s) | 76, 867 |
| BpiI | GAAGAC | 1 cut(s) | 943 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 258 |
| Bsa29I | ATCGAT | 1 cut(s) | 555 |
| BsaBI | GATNNNNATC | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 3 cut(s) | 119, 788, 931 |
| BsaWI | WCCGGW | 1 cut(s) | 1127 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 897, 927 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| Bse118I | RCCGGY | 1 cut(s) | 772 |
| Bse1I | ACTGG | 1 cut(s) | 598 |
| Bse8I | GATNNNNATC | 1 cut(s) | 573 |
| BseAI | TCCGGA | 1 cut(s) | 1127 |
| BseBI | CCWGG | 1 cut(s) | 1083 |
| BseCI | ATCGAT | 1 cut(s) | 555 |
| BseDI | CCNNGG | 3 cut(s) | 119, 788, 931 |
| BseGI | GGATG | 3 cut(s) | 31, 166, 859 |
| BseJI | GATNNNNATC | 1 cut(s) | 573 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| BseMII | CTCAG | 2 cut(s) | 349, 1083 |
| BseNI | ACTGG | 1 cut(s) | 598 |
| BseXI | GCAGC | 3 cut(s) | 126, 204, 788 |
| Bsh1285I | CGRYCG | 1 cut(s) | 405 |
| BshFI | GGCC | 1 cut(s) | 787 |
| BshNI | GGYRCC | 1 cut(s) | 643 |
| BshVI | ATCGAT | 1 cut(s) | 555 |
| BsiEI | CGRYCG | 1 cut(s) | 405 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1048 |
| BsiSI | CCGG | 2 cut(s) | 773, 1128 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 533, 653 |
| BsmAI | GTCTC | 2 cut(s) | 294, 396 |
| BsnI | GGCC | 1 cut(s) | 787 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1048, 1127, 1141 |
| Bsp13I | TCCGGA | 1 cut(s) | 1127 |
| Bsp143I | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 258 |
| Bsp19I | CCATGG | 1 cut(s) | 119 |
| BspACI | CCGC | 3 cut(s) | 230, 803, 916 |
| BspANI | GGCC | 1 cut(s) | 787 |
| BspCNI | CTCAG | 2 cut(s) | 348, 1084 |
| BspDI | ATCGAT | 1 cut(s) | 555 |
| BspEI | TCCGGA | 1 cut(s) | 1127 |
| BspHI | TCATGA | 1 cut(s) | 1144 |
| BspLI | GGNNCC | 5 cut(s) | 174, 186, 525, 645, 1126 |
| BspPI | GGATC | 6 cut(s) | 71, 167, 180, 218, 363, 822 |
| BspT107I | GGYRCC | 1 cut(s) | 643 |
| BsrBI | CCGCTC | 1 cut(s) | 918 |
| BsrFI | RCCGGY | 1 cut(s) | 772 |
| BsrI | ACTGG | 1 cut(s) | 598 |
| BssAI | RCCGGY | 1 cut(s) | 772 |
| BssECI | CCNNGG | 3 cut(s) | 119, 788, 931 |
| BssMI | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| BssSI | CACGAG | 1 cut(s) | 919 |
| BssT1I | CCWWGG | 2 cut(s) | 119, 931 |
| Bst2BI | CACGAG | 1 cut(s) | 919 |
| Bst2UI | CCWGG | 1 cut(s) | 1083 |
| BstC8I | GCNNGC | 4 cut(s) | 234, 414, 418, 808 |
| BstDEI | CTNAG | 4 cut(s) | 258, 335, 1077, 1092 |
| BstDSI | CCRYGG | 1 cut(s) | 119 |
| BstF5I | GGATG | 3 cut(s) | 31, 166, 859 |
| BstKTI | GATC | 9 cut(s) | 61, 66, 133, 175, 213, 358, 519, 817, 1135 |
| BstMAI | GTCTC | 2 cut(s) | 294, 396 |
| BstMBI | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| BstMCI | CGRYCG | 1 cut(s) | 405 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 773 |
| BstNI | CCWGG | 1 cut(s) | 1083 |
| BstNSI | RCATGY | 1 cut(s) | 810 |
| BstSCI | CCNGG | 1 cut(s) | 1081 |
| BstSFI | CTRYAG | 1 cut(s) | 905 |
| BstV1I | GCAGC | 3 cut(s) | 126, 204, 788 |
| BstV2I | GAAGAC | 1 cut(s) | 943 |
| BstX2I | RGATCY | 3 cut(s) | 172, 355, 814 |
| BstYI | RGATCY | 3 cut(s) | 172, 355, 814 |
| Bsu15I | ATCGAT | 1 cut(s) | 555 |
| BsuRI | GGCC | 1 cut(s) | 787 |
| BsuTUI | ATCGAT | 1 cut(s) | 555 |
| BtgI | CCRYGG | 1 cut(s) | 119 |
| BtgZI | GCGATG | 1 cut(s) | 330 |
| BtsCI | GGATG | 3 cut(s) | 31, 166, 859 |
| BtsI | GCAGTG | 1 cut(s) | 721 |
| BtsIMutI | CAGTG | 3 cut(s) | 50, 591, 721 |
| Cac8I | GCNNGC | 4 cut(s) | 234, 414, 418, 808 |
| CaiI | CAGNNNCTG | 1 cut(s) | 89 |
| CciI | TCATGA | 1 cut(s) | 1144 |
| Cfr10I | RCCGGY | 1 cut(s) | 772 |
| ClaI | ATCGAT | 1 cut(s) | 555 |
| Csp6I | GTAC | 1 cut(s) | 770 |
| CviAII | CATG | 7 cut(s) | 120, 134, 221, 479, 807, 1031, 1145 |
| CviQI | GTAC | 1 cut(s) | 770 |
| DdeI | CTNAG | 4 cut(s) | 258, 335, 1077, 1092 |
| DpnI | GATC | 9 cut(s) | 60, 65, 132, 174, 212, 357, 518, 816, 1134 |
| DpnII | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| EciI | GGCGGA | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 2 cut(s) | 119, 931 |
| Eco24I | GRGCYC | 2 cut(s) | 1127, 1141 |
| Eco32I | GATATC | 1 cut(s) | 571 |
| Eco57I | CTGAAG | 2 cut(s) | 355, 380 |
| EcoRI | GAATTC | 1 cut(s) | 225 |
| EcoRII | CCWGG | 1 cut(s) | 1081 |
| EcoRV | GATATC | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 2 cut(s) | 119, 931 |
| EcoT22I | ATGCAT | 1 cut(s) | 840 |
| EcoT38I | GRGCYC | 2 cut(s) | 1127, 1141 |
| ErhI | CCWWGG | 2 cut(s) | 119, 931 |
| FaeI | CATG | 7 cut(s) | 123, 137, 224, 482, 810, 1034, 1148 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 353, 385, 409, 441 |
| FatI | CATG | 7 cut(s) | 119, 133, 220, 478, 806, 1030, 1144 |
| FbaI | TGATCA | 2 cut(s) | 130, 516 |
| Fnu4HI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| FokI | GGATG | 3 cut(s) | 38, 173, 866 |
| FriOI | GRGCYC | 2 cut(s) | 1127, 1141 |
| Fsp4HI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| FspBI | CTAG | 3 cut(s) | 653, 711, 932 |
| GluI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| HaeIII | GGCC | 1 cut(s) | 787 |
| HapII | CCGG | 2 cut(s) | 773, 1128 |
| Hin1II | CATG | 7 cut(s) | 123, 137, 224, 482, 810, 1034, 1148 |
| HindIII | AAGCTT | 1 cut(s) | 201 |
| HinfI | GANTC | 8 cut(s) | 264, 339, 475, 649, 755, 821, 845, 970 |
| HpaII | CCGG | 2 cut(s) | 773, 1128 |
| HphI | GGTGA | 2 cut(s) | 646, 755 |
| Hpy166II | GTNNAC | 1 cut(s) | 1010 |
| Hpy8I | GTNNAC | 1 cut(s) | 1010 |
| Hpy99I | CGWCG | 2 cut(s) | 681, 1053 |
| HpyAV | CCTTC | 7 cut(s) | 93, 373, 379, 627, 791, 957, 995 |
| HpyCH4IV | ACGT | 2 cut(s) | 529, 1012 |
| HpyCH4V | TGCA | 4 cut(s) | 220, 694, 810, 838 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 773 |
| HpyF3I | CTNAG | 4 cut(s) | 258, 335, 1077, 1092 |
| HpySE526I | ACGT | 2 cut(s) | 529, 1012 |
| Hsp92II | CATG | 7 cut(s) | 123, 137, 224, 482, 810, 1034, 1148 |
| Kpn2I | TCCGGA | 1 cut(s) | 1127 |
| Ksp22I | TGATCA | 2 cut(s) | 130, 516 |
| Kzo9I | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| LmnI | GCTCC | 2 cut(s) | 523, 1130 |
| Lsp1109I | GCAGC | 3 cut(s) | 126, 204, 788 |
| LweI | GCATC | 2 cut(s) | 76, 867 |
| MaeI | CTAG | 3 cut(s) | 653, 711, 932 |
| MaeII | ACGT | 2 cut(s) | 529, 1012 |
| MalI | GATC | 9 cut(s) | 60, 65, 132, 174, 212, 357, 518, 816, 1134 |
| MbiI | CCGCTC | 1 cut(s) | 918 |
| MboI | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| MboII | GAAGA | 3 cut(s) | 108, 388, 948 |
| MflI | RGATCY | 3 cut(s) | 172, 355, 814 |
| MhlI | GDGCHC | 3 cut(s) | 1048, 1127, 1141 |
| MluCI | AATT | 5 cut(s) | 52, 225, 668, 829, 1098 |
| MlyI | GAGTC | 3 cut(s) | 333, 484, 764 |
| MmeI | TCCRAC | 3 cut(s) | 732, 738, 774 |
| MnlI | CCTC | 9 cut(s) | 264, 302, 531, 783, 923, 998, 1010, 1016, 1078 |
| Mph1103I | ATGCAT | 1 cut(s) | 840 |
| MroI | TCCGGA | 1 cut(s) | 1127 |
| MseI | TTAA | 6 cut(s) | 107, 242, 833, 861, 899, 1110 |
| MspI | CCGG | 2 cut(s) | 773, 1128 |
| MspR9I | CCNGG | 1 cut(s) | 1083 |
| MvaI | CCWGG | 1 cut(s) | 1083 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 773 |
| NcoI | CCATGG | 1 cut(s) | 119 |
| NdeII | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| NlaIII | CATG | 7 cut(s) | 123, 137, 224, 482, 810, 1034, 1148 |
| NlaIV | GGNNCC | 5 cut(s) | 174, 186, 525, 645, 1126 |
| NmeAIII | GCCGAG | 1 cut(s) | 813 |
| NsiI | ATGCAT | 1 cut(s) | 840 |
| NspI | RCATGY | 1 cut(s) | 810 |
| PaeI | GCATGC | 1 cut(s) | 810 |
| PagI | TCATGA | 1 cut(s) | 1144 |
| PfeI | GAWTC | 5 cut(s) | 264, 649, 821, 845, 970 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 533 |
| PkrI | GCNGC | 4 cut(s) | 141, 219, 778, 805 |
| PleI | GAGTC | 3 cut(s) | 333, 483, 763 |
| PpsI | GAGTC | 3 cut(s) | 333, 483, 763 |
| Psp6I | CCWGG | 1 cut(s) | 1081 |
| PspGI | CCWGG | 1 cut(s) | 1081 |
| PspN4I | GGNNCC | 5 cut(s) | 174, 186, 525, 645, 1126 |
| PstNI | CAGNNNCTG | 1 cut(s) | 89 |
| PsuI | RGATCY | 3 cut(s) | 172, 355, 814 |
| RsaI | GTAC | 1 cut(s) | 771 |
| RsaNI | GTAC | 1 cut(s) | 770 |
| SaqAI | TTAA | 6 cut(s) | 107, 242, 833, 861, 899, 1110 |
| SatI | GCNGC | 4 cut(s) | 140, 218, 777, 804 |
| Sau3AI | GATC | 9 cut(s) | 58, 63, 130, 172, 210, 355, 516, 814, 1132 |
| SchI | GAGTC | 3 cut(s) | 333, 484, 764 |
| ScrFI | CCNGG | 1 cut(s) | 1083 |
| SduI | GDGCHC | 3 cut(s) | 1048, 1127, 1141 |
| SfaNI | GCATC | 2 cut(s) | 76, 867 |
| SfcI | CTRYAG | 1 cut(s) | 905 |
| SphI | GCATGC | 1 cut(s) | 810 |
| Sse9I | AATT | 5 cut(s) | 52, 225, 668, 829, 1098 |
| SsiI | CCGC | 3 cut(s) | 230, 803, 916 |
| SspMI | CTAG | 3 cut(s) | 653, 711, 932 |
| StyD4I | CCNGG | 1 cut(s) | 1081 |
| StyI | CCWWGG | 2 cut(s) | 119, 931 |
| TaiI | ACGT | 2 cut(s) | 532, 1015 |
| TaqI | TCGA | 5 cut(s) | 267, 405, 555, 1048, 1135 |
| TaqII | GACCGA | 1 cut(s) | 391 |
| TasI | AATT | 5 cut(s) | 52, 225, 668, 829, 1098 |
| TauI | GCSGC | 1 cut(s) | 806 |
| TfiI | GAWTC | 5 cut(s) | 264, 649, 821, 845, 970 |
| Tru1I | TTAA | 6 cut(s) | 107, 242, 833, 861, 899, 1110 |
| Tru9I | TTAA | 6 cut(s) | 107, 242, 833, 861, 899, 1110 |
| TscAI | CASTG | 3 cut(s) | 50, 598, 721 |
| TseI | GCWGC | 3 cut(s) | 139, 217, 776 |
| TspDTI | ATGAA | 4 cut(s) | 42, 699, 842, 1019 |
| TspGWI | ACGGA | 2 cut(s) | 827, 1105 |
| TspRI | CASTG | 3 cut(s) | 50, 598, 721 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 533 |
| XapI | RAATTY | 2 cut(s) | 225, 829 |
| XceI | RCATGY | 1 cut(s) | 810 |
| XmaJI | CCTAGG | 1 cut(s) | 931 |
| XspI | CTAG | 3 cut(s) | 653, 711, 932 |
| Zsp2I | ATGCAT | 1 cut(s) | 840 |