Rh5DG399400

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000022
Physical Location & Seq
Reverse (-)
62921514 .. 62930118
8605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG399400.1

Sequence Viewer

Length: 2130 bp
ATGGATGAGATGGAGCGTAGGTTTGCTGGTACTTTGGTCTTTTCTGAGAGGGAGGCTAAAGGTTTGAGAATTGGTGGTGCGGCTGCTCAGTCTGTCATTAGGTATAAATTTGCTTTGGTCTGCAAGGTTGTAACTCCGCGCACGTTCTGTCGGCGGTATTTTATTGACTTGTTTACTAGACTGGGGGGGGGGGGGGGTGGACGTGGTGTGTTCATCAGCGATGTGGAGGACGAACGTTTTCTTGCTCGCTTTCTGTGTGAAGAGGATCTGATGAACATACTTCAGAGAGAGTCTTGGGAGTTTGATAATTCACTGGTTGTTATGGGACGTTTACCGGAGACAGGCGCGATCATGTCAGTGGACCTTTCACAGGCTATTTTCTGGGTACAAGCTCGTGGGGTTCCTCTCCGGTATCGGACTCAGGCAGTGGCAAGAGATATTGGCGGAATGGTGGGCTCTGTGGTGGACGTCAAAACTGAAGAAGATGGGAACTGTATTGGGAGGCTTACAGAATTTTGTCAAGAATGTGGCCTGATTGGGCATCCCACGAGGATATGTGATAAGAAGCTAGGAATTGTTGGAAAGTTAGAAGCTGATCGTCCCTTTCCTTCATCTTTAAGGGCAGAGTGGGACTTGCAAGGTAAGCGAATGGGGTCTCGAGGTGGAAATTATGGTGGATGTGGGGTTAGTGAAGGTGGTAGTGGTTCTGATTCTTGGGTCCACTCACAACATAGAGGTAATGTTACAGGTAGACGTGAAAGGGAGTGGGTGAATGTTGAGGGACCTCTCCCACTTGAGGGGCCTCTACAGGATACTGCCTCCTCCCCTGTGAAGACAAGTAAGTCAAGAGAGTTGGTCAGAGGTGAGTTGGGTTGGAGAACATCGAGGGAACATGCCTCTAAGGATGCCATGAGGAGATTGGAGACTTTGTTTCAAGACTCTTTTGAGGAAACGGGGACTCAGTGTGAGCCGCTAATGCTTGAGAATATTCTAGGATTGAACTTGGAAGCTGATCCAAAGGATGTTCTTAGGATGAATCCTTATCTGTTTGAGTTCAAGGTGGGGAGTCAACAAAGCTCACTTAAGTCTCCTGTTAAGGTGAATGGAAGGAAGCACTTGAGGGTTTCTGCAAGGTGGAAACTGAAACTTATTCTGGAGGAGAATGAAGGAGTTACAGTAGTGGAAAATGGGAAGCGGAAAAAGGAGGAAGACACTTCCTCTACTGATAATGTAATGACGAAGAAGCTGTTACTTGTTGAAAAGGAGGAGATACAACTCTTAGCTGTGCTATTGTGGTTGAATTGGCATGAACAGAATAATTGTTATCATAAGGGGACTGTTGTGCCTTCTGAGATTATTTTTGTGAATGGAGTTGAATTTTTAAAGAGGTATAAGGATGGCCTATGTCAACGTAAGAGAGTGGAGGTTGTACATGGTGACATGGCAGTGGGTCTGGCTAGGAGGTGGATTCCTCCAGAACGGGGTTTTTTGAAGGTTAATTGTGATGGGGCAGCAAGTGATGGTGAGAGATGTTATGGTGGTGGGGTGACTATTAGAGATGAATTTGGTACGTTACTTGCGGCAGCAGGGGAGAACTATCAGTACCAATGCTCACCTTTGGTTACTGAGCTACTTGCAATTAAGTTGGGTCTGGAAGTAGTTGTGGAAAGGAGGATGAGAAATGTGGTGGTTGAGTCTGATTGTTTGGAGGCAATTCAATTGCTTATATATAAAGATAGATGCTTGAGTGCTGAGGGTGGAATCATTGAGGACATCCAACAACTTATGGCTCTACTCAACATCCCAACCATCCACCATGTTCGTCGTGAAGGTGACAAGGCTGCTCATGCACCCTACAGGCTGGAGCACAGGGGCGCAGAGGCGGCAGAGCAATCTGACTCACTCAGCGACCTGGGTCACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACTGAGCAACCCATTACCCATCTCCGGTAGTCCGGTCTCCGAGGCTCCGAGCTCCCCACCGCGGCACCGGCACCAGCCCACCAGCCCACCGCTCCACCAGCAACCCCTCTGGCTGTCTCCGTGGACCGTGATTTGCAGAATTGATGTATTGATGTTGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

709

Amino Acids

79.28

Weight (kDa)

6.63

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 500 - 617 3.7e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000022)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18231 FvH4_1g19111 FvH4_1g25603 FvH4_1g25612 FvH4_1g27352 FvH4_2g10730 FvH4_2g13120 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g05891 FvH4_3g22921 FvH4_3g23592 FvH4_3g23822 FvH4_5g04250 FvH4_5g23151 FvH4_5g37180 FvH4_6g29732 FvH4_7g18821 FvH4_7g32131
prunus_persica Prupe.1G197400_v2.0.a1 Prupe.2G026100_v2.0.a1 Prupe.2G059100_v2.0.a1 Prupe.2G099000_v2.0.a1 Prupe.3G105700_v2.0.a1 Prupe.3G153700_v2.0.a1 Prupe.3G196300_v2.0.a1 Prupe.3G237600_v2.0.a1 Prupe.6G195300_v2.0.a1 Prupe.7G028300_v2.0.a1 Prupe.7G030300_v2.0.a1 Prupe.7G035300_v2.0.a1 Prupe.7G053200_v2.0.a1 Prupe.7G053800_v2.0.a1
pyrus_communis pycom04g19620 pycom10g05030
rosa_chinensis RchiOBHm_Chr3g0468751 RchiOBHm_Chr4g0412211 RchiOBHm_Chr4g0435351 RchiOBHm_Chr4g0435361
rosa_laevigata RLG00000000658 RLG00000004042 RLG00000004625 RLG00000005981 RLG00000007988 RLG00000008105 RLG00000009047 RLG00000011402 RLG00000011415 RLG00000012178 RLG00000012218 RLG00000012251 RLG00000012412 RLG00000012647 RLG00000013541 RLG00000013547 RLG00000013548 RLG00000014198 RLG00000015054 RLG00000015221 RLG00000018021 RLG00000018022 RLG00000018285 RLG00000018569 RLG00000018897 RLG00000019206 RLG00000021674 RLG00000022785 RLG00000023709 RLG00000030006 RLG00000030958 RLG00000032025 RLG00000032026 RLG00000032326 RLG00000032591 RLG00000032797 RLG00000033436 RLG00000033536 RLG00000033572 RLG00000033974 RLG00000034193 RLG00000034718 RLG00000034721 RLG00000035117 RLG00000035348 RLG00000035349 RLG00000035579 RLG00000035708 RLG00000035775 RLG00000036281 RLG00000036638 RLG00000036661 RLG00000036836
rosa_multiflora Rmu_co8092304.1_g000001 Rmu_co8122208.1_g000001 Rmu_co8124144.1_g000001 Rmu_co8176690.1_g000001 Rmu_co8198582.1_g000001 Rmu_co8290821.1_g000001 Rmu_co8299115.1_g000001 Rmu_co8362595.1_g000001 Rmu_co8372359.1_g000001 Rmu_co8402715.1_g000001 Rmu_sc0000077.1_g000014 Rmu_sc0000105.1_g000001 Rmu_sc0000156.1_g000012 Rmu_sc0000338.1_g000021 Rmu_sc0000381.1_g000006 Rmu_sc0000545.1_g000025 Rmu_sc0000556.1_g000013 Rmu_sc0000556.1_g000014 Rmu_sc0000565.1_g000001 Rmu_sc0000580.1_g000005 Rmu_sc0000580.1_g000124 Rmu_sc0000595.1_g000001 Rmu_sc0000608.1_g000006 Rmu_sc0000744.1_g000086 Rmu_sc0000776.1_g000041 Rmu_sc0000791.1_g000060 Rmu_sc0000791.1_g000072 Rmu_sc0000796.1_g000014 Rmu_sc0000876.1_g000019 Rmu_sc0000892.1_g000009 Rmu_sc0000898.1_g000087 Rmu_sc0000948.1_g000026 Rmu_sc0001001.1_g000005 Rmu_sc0001148.1_g000023 Rmu_sc0001148.1_g000027 Rmu_sc0001161.1_g000008 Rmu_sc0001215.1_g000016 Rmu_sc0001251.1_g000019 Rmu_sc0001264.1_g000018 Rmu_sc0001291.1_g000031 Rmu_sc0001293.1_g000015 Rmu_sc0001323.1_g000008 Rmu_sc0001334.1_g000008 Rmu_sc0001356.1_g000001 Rmu_sc0001356.1_g000002 Rmu_sc0001382.1_g000002 Rmu_sc0001436.1_g000012 Rmu_sc0001647.1_g000014 Rmu_sc0001665.1_g000036 Rmu_sc0001698.1_g000013 Rmu_sc0001711.1_g000028 Rmu_sc0001767.1_g000012 Rmu_sc0001836.1_g000042 Rmu_sc0001911.1_g000021 Rmu_sc0001939.1_g000021 Rmu_sc0001940.1_g000012 Rmu_sc0002036.1_g000003 Rmu_sc0002138.1_g000004 Rmu_sc0002154.1_g000008 Rmu_sc0002267.1_g000004 Rmu_sc0002267.1_g000007 Rmu_sc0002451.1_g000016 Rmu_sc0002516.1_g000008 Rmu_sc0002530.1_g000008 Rmu_sc0002571.1_g000012 Rmu_sc0002667.1_g000021 Rmu_sc0002695.1_g000004 Rmu_sc0002784.1_g000031 Rmu_sc0002833.1_g000023 Rmu_sc0002848.1_g000014 Rmu_sc0002945.1_g000003 Rmu_sc0002952.1_g000020 Rmu_sc0002960.1_g000008 Rmu_sc0003060.1_g000001 Rmu_sc0003102.1_g000001 Rmu_sc0003303.1_g000015 Rmu_sc0003354.1_g000011 Rmu_sc0003387.1_g000006 Rmu_sc0003778.1_g000041 Rmu_sc0003859.1_g000045 Rmu_sc0003878.1_g000026 Rmu_sc0004118.1_g000001 Rmu_sc0004212.1_g000008 Rmu_sc0004482.1_g000017 Rmu_sc0004482.1_g000023 Rmu_sc0004618.1_g000036 Rmu_sc0004618.1_g000037 Rmu_sc0004744.1_g000010 Rmu_sc0004762.1_g000009 Rmu_sc0004965.1_g000002 Rmu_sc0004967.1_g000001 Rmu_sc0005173.1_g000014 Rmu_sc0005431.1_g000011 Rmu_sc0005431.1_g000012 Rmu_sc0005431.1_g000022 Rmu_sc0005861.1_g000010 Rmu_sc0005861.1_g000011 Rmu_sc0005913.1_g000019 Rmu_sc0006124.1_g000018 Rmu_sc0006318.1_g000025 Rmu_sc0006616.1_g000012 Rmu_sc0006616.1_g000013 Rmu_sc0006691.1_g000007 Rmu_sc0006776.1_g000007 Rmu_sc0006824.1_g000022 Rmu_sc0006828.1_g000004 Rmu_sc0007059.1_g000005 Rmu_sc0007069.1_g000026 Rmu_sc0007074.1_g000002 Rmu_sc0007081.1_g000002 Rmu_sc0007785.1_g000004 Rmu_sc0007848.1_g000033 Rmu_sc0007883.1_g000007 Rmu_sc0008002.1_g000009 Rmu_sc0008317.1_g000011 Rmu_sc0009180.1_g000007 Rmu_sc0009185.1_g000018 Rmu_sc0010368.1_g000010 Rmu_sc0011733.1_g000008 Rmu_sc0013073.1_g000004 Rmu_sc0013075.1_g000005 Rmu_sc0013280.1_g000003 Rmu_sc0014404.1_g000012 Rmu_sc0014510.1_g000006 Rmu_sc0017005.1_g000006 Rmu_sc0017051.1_g000001 Rmu_sc0017086.1_g000004 Rmu_sc0017394.1_g000004 Rmu_sc0017563.1_g000001 Rmu_sc0018393.1_g000003 Rmu_sc0020047.1_g000001 Rmu_sc0024008.1_g000003 Rmu_sc0026560.1_g000002 Rmu_sc0027933.1_g000001 Rmu_sc0027934.1_g000001 Rmu_sc0029145.1_g000001 Rmu_sc0030686.1_g000002 Rmu_sc0034848.1_g000001 Rmu_sc0036896.1_g000001 Rmu_sc0036897.1_g000001 Rmu_sc0038027.1_g000001 Rmu_sc0041267.1_g000001 Rmu_sc0041948.1_g000001 Rmu_ssc0000011.1_g000021 Rmu_ssc0000019.1_g000009 Rmu_ssc0000127.1_g000005 Rmu_ssc0000135.1_g000011 Rmu_ssc0000264.1_g000029 Rmu_ssc0000432.1_g000047
rosa_roxburghii Rroxscaffold_157G00438300 Rroxscaffold_176G00431540 Rroxscaffold_1G00032330 Rroxscaffold_1G00037330 Rroxscaffold_1G00039780 Rroxscaffold_1G00044330 Rroxscaffold_1G00059840 Rroxscaffold_1G00061850 Rroxscaffold_1G00067020 Rroxscaffold_2G00094770 Rroxscaffold_2G00097970 Rroxscaffold_2G00111380 Rroxscaffold_2G00114430 Rroxscaffold_2G00118370 Rroxscaffold_3G00244430 Rroxscaffold_3G00245450 Rroxscaffold_3G00252790 Rroxscaffold_3G00252800 Rroxscaffold_3G00253930 Rroxscaffold_3G00263900 Rroxscaffold_3G00266650 Rroxscaffold_4G00283310 Rroxscaffold_4G00285100 Rroxscaffold_4G00287050 Rroxscaffold_4G00293050 Rroxscaffold_4G00311960 Rroxscaffold_4G00317580 Rroxscaffold_4G00318840 Rroxscaffold_4G00330920 Rroxscaffold_5G00333040 Rroxscaffold_5G00338150 Rroxscaffold_5G00353130 Rroxscaffold_5G00362630 Rroxscaffold_5G00373970 Rroxscaffold_6G00398030 Rroxscaffold_6G00403960 Rroxscaffold_6G00404110 Rroxscaffold_6G00408470 Rroxscaffold_6G00411860 Rroxscaffold_7G00187970 Rroxscaffold_7G00190970 Rroxscaffold_7G00196980 Rroxscaffold_7G00203070 Rroxscaffold_8G00436830 Rroxscaffold_8G00436840
rosa_rugosa Rorug01G0001300 Rorug01G0273100 Rorug02G0195100 Rorug02G0231300 Rorug02G0441000 Rorug02G0513500 Rorug02G0654500 Rorug03G0189500 Rorug03G0355500 Rorug04G0026700 Rorug04G0103000 Rorug04G0128300 Rorug04G0134700 Rorug04G0203100 Rorug05G0010600 Rorug05G0010700 Rorug05G0010800 Rorug05G0142000 Rorug05G0143200 Rorug05G0158300 Rorug05G0207700 Rorug05G0235800 Rorug06G0014100 Rorug06G0041600 Rorug06G0170300 Rorug07G0106500 Rorug07G0129200 Rorug07G0151100 Rorug07G0210500 Rorug07G0310600
rosa_samantha Rh1AG215600 Rh1AG231300 Rh1BG029100 Rh1BG029200 Rh1BG029300 Rh1BG061600 Rh1BG089300 Rh1BG103900 Rh1BG119800 Rh1BG126600 Rh1BG172800 Rh1BG305900 Rh1CG019500 Rh1CG061200 Rh1CG178900 Rh1CG200100 Rh1CG215200 Rh1DG008800 Rh1DG065300 Rh1DG102700 Rh1DG161600 Rh1DG202700 Rh1DG228800 Rh1DG338100 Rh2AG031400 Rh2AG031500 Rh2AG031600 Rh2AG239800 Rh2AG352400 Rh2AG420700 Rh2AG468100 Rh2BG064800 Rh2BG355600 Rh2BG563200 Rh2CG031200 Rh2CG031300 Rh2CG031400 Rh2CG066300 Rh2CG202000 Rh2CG217900 Rh2CG407600 Rh2CG407700 Rh2CG563800 Rh2DG016500 Rh2DG031100 Rh2DG073700 Rh2DG221200 Rh2DG247700 Rh2DG317700 Rh2DG320500 Rh2DG572500 Rh3BG168200 Rh3CG044300 Rh3CG234500 Rh3CG234600 Rh3CG280700 Rh3CG280800 Rh3CG315800 Rh3DG276800 Rh4AG055600 Rh4AG070200 Rh4AG076400 Rh4AG207200 Rh4AG215300 Rh4BG017000 Rh4BG035100 Rh4BG053700 Rh4BG068000 Rh4BG083600 Rh4BG085100 Rh4BG085400 Rh4BG085500 Rh4BG129100 Rh4BG226900 Rh4CG075900 Rh4CG082300 Rh5AG085800 Rh5AG105400 Rh5AG111000 Rh5AG310300 Rh5AG517300 Rh5AG518000 Rh5BG101600 Rh5BG101700 Rh5BG136100 Rh5BG192800 Rh5BG457600 Rh5BG535800 Rh5CG113500 Rh5CG166800 Rh5CG221300 Rh5CG284500 Rh5CG284600 Rh5CG300000 Rh5CG309400 Rh5CG380000 Rh5DG053700 Rh5DG100200 Rh5DG123700 Rh5DG123800 Rh5DG242500 Rh5DG273200 Rh5DG284200 Rh5DG329000 Rh5DG399400 Rh5DG412700 Rh5DG428300 Rh5DG472200 Rh5DG472300 Rh6AG027400 Rh6AG087000 Rh6AG088900 Rh6AG135900 Rh6AG162100 Rh6AG169800 Rh6AG172500 Rh6AG341600 Rh6AG417800 Rh6BG023500 Rh6BG229100 Rh6BG381600 Rh6BG390400 Rh6CG160200 Rh6CG190500 Rh6CG322500 Rh6DG073200 Rh6DG188800 Rh6DG308300 Rh6DG320800 Rh7AG010500 Rh7AG225800 Rh7AG248100 Rh7AG248200 Rh7AG303700 Rh7AG320800 Rh7AG331700 Rh7AG428300 Rh7AG466200 Rh7BG098200 Rh7BG107900 Rh7BG297200 Rh7BG358100 Rh7CG255500 Rh7CG263600 Rh7CG281500 Rh7CG349100 Rh7DG091300 Rh7DG114500 Rh7DG254200 Rh7DG316800 Rh7DG378500
rosa_wichuraiana Rw0G006200 Rw0G010380 Rw0G018260 Rw1G016250 Rw1G017620 Rw1G018280 Rw1G018390 Rw2G002470 Rw2G008750 Rw2G028260 Rw2G033640 Rw2G033840 Rw4G000510 Rw4G003170 Rw4G004830 Rw4G006220 Rw4G010290 Rw5G009180 Rw5G009680 Rw5G015760 Rw5G017730 Rw5G021440 Rw5G035270 Rw5G042770 Rw6G002880 Rw6G003090 Rw6G003400 Rw6G007620 Rw6G011710 Rw6G017000 Rw6G029770 Rw7G009660 Rw7G020940 Rw7G032200 Rw7G034460 Rw7G034840 Rw7G038460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 841
AatII GACGTC 1 cut(s) 471
AccB1I GGYRCC 2 cut(s) 2028, 2034
AccBSI CCGCTC 1 cut(s) 2056
AccI GTMKAC 1 cut(s) 751
AccII CGCG 3 cut(s) 139, 347, 2026
AclI AACGTT 1 cut(s) 235
AclWI GGATC 2 cut(s) 273, 1007
AcsI RAATTY 4 cut(s) 107, 512, 1376, 1562
AcuI CTGAAG 2 cut(s) 266, 498
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 5 cut(s) 31, 387, 1431, 1570, 1604
AfiI CCNNNNNNNGG 7 cut(s) 341, 370, 796, 797, 1481, 1988, 2025
AflII CTTAAG 1 cut(s) 1082
AgsI TTSAA 8 cut(s) 935, 1000, 1057, 1259, 1300, 1376, 1492, 1718
AjiI CACGTC 2 cut(s) 203, 755
AjnI CCWGG 2 cut(s) 1911, 1952
AluBI AGCT 9 cut(s) 392, 568, 593, 1010, 1077, 1246, 1283, 1630, 2016
AluI AGCT 9 cut(s) 392, 568, 593, 1010, 1077, 1246, 1283, 1630, 2016
Alw21I GWGCWC 2 cut(s) 1869, 2018
Alw26I GTCTC 6 cut(s) 332, 660, 917, 1092, 2005, 2085
AlwI GGATC 2 cut(s) 273, 1007
AlwNI CAGNNNCTG 1 cut(s) 1966
Ama87I CYCGRG 1 cut(s) 657
AoxI GGCC 3 cut(s) 529, 800, 1399
ApeKI GCWGC 4 cut(s) 83, 1511, 1583, 1841
ApoI RAATTY 4 cut(s) 107, 512, 1376, 1562
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 3 cut(s) 141, 347, 1877
AspS9I GGNCC 5 cut(s) 361, 718, 782, 800, 2088
AsuC2I CCSGG 1 cut(s) 1922
AsuHPI GGTGA 9 cut(s) 781, 875, 1111, 1448, 1535, 1558, 1605, 1844, 1910
AvaI CYCGRG 1 cut(s) 657
AvaII GGWCC 4 cut(s) 361, 718, 782, 2088
BaeI ACNNNNGTAYC 2 cut(s) 21, 54
BanI GGYRCC 2 cut(s) 2028, 2034
BanII GRGCYC 2 cut(s) 458, 2018
BauI CACGAG 2 cut(s) 393, 547
BbsI GAAGAC 2 cut(s) 839, 1215
Bbv12I GWGCWC 2 cut(s) 1869, 2018
BbvCI CCTCAGC 1 cut(s) 1752
BbvI GCAGC 4 cut(s) 70, 1523, 1595, 1828
BccI CCATC 7 cut(s) 4, 479, 1391, 1499, 1514, 1817, 1991
BciT130I CCWGG 2 cut(s) 1913, 1954
BciVI GTATCC 1 cut(s) 805
BcnI CCSGG 1 cut(s) 1922
BcoDI GTCTC 6 cut(s) 332, 660, 917, 1092, 2005, 2085
BfaI CTAG 4 cut(s) 177, 569, 992, 1458
BfmI CTRYAG 2 cut(s) 806, 1855
BfrI CTTAAG 1 cut(s) 1082
BfuI GTATCC 1 cut(s) 805
BisI GCNGC 9 cut(s) 81, 84, 971, 1512, 1581, 1584, 1842, 1884, 2027
BlsI GCNGC 9 cut(s) 82, 85, 972, 1513, 1582, 1585, 1843, 1885, 2028
Bme1390I CCNGG 3 cut(s) 1913, 1922, 1954
Bme18I GGWCC 4 cut(s) 361, 718, 782, 2088
BmeT110I CYCGRG 1 cut(s) 657
BmgBI CACGTC 2 cut(s) 203, 755
BmgT120I GGNCC 5 cut(s) 361, 718, 782, 800, 2088
BmiI GGNNCC 8 cut(s) 402, 719, 783, 801, 1958, 2010, 2030, 2036
BmrFI CCNGG 3 cut(s) 1913, 1922, 1954
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 3 cut(s) 550, 895, 1730
BmuI ACTGGG 1 cut(s) 191
BoxI GACNNNNGTC 1 cut(s) 1914
BpiI GAAGAC 2 cut(s) 839, 1215
BpmI CTGGAG 3 cut(s) 1175, 1458, 1883
Bpu10I CCTNAGC 1 cut(s) 1752
BpuEI CTTGAG 4 cut(s) 815, 1001, 1138, 1765
BpuMI CCSGG 1 cut(s) 1922
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 2 cut(s) 660, 2005
BsaJI CCNNGG 4 cut(s) 1912, 2004, 2024, 2084
BsaWI WCCGGW 4 cut(s) 334, 408, 1988, 1996
BsaXI ACNNNNNCTCC 6 cut(s) 5, 35, 914, 944, 1161, 1191
Bsc4I CCNNNNNNNGG 7 cut(s) 341, 370, 796, 797, 1481, 1988, 2025
Bse118I RCCGGY 1 cut(s) 2031
Bse1I ACTGG 2 cut(s) 186, 318
BseBI CCWGG 2 cut(s) 1913, 1954
BseDI CCNNGG 4 cut(s) 1912, 2004, 2024, 2084
BseLI CCNNNNNNNGG 7 cut(s) 341, 370, 796, 797, 1481, 1988, 2025
BseMII CTCAG 9 cut(s) 36, 101, 434, 974, 1341, 1617, 1743, 1918, 1958
BseNI ACTGG 2 cut(s) 186, 318
BseRI GAGGAG 4 cut(s) 811, 928, 1172, 1280
BseXI GCAGC 4 cut(s) 70, 1523, 1595, 1828
Bsh1236I CGCG 3 cut(s) 139, 347, 2026
BshFI GGCC 3 cut(s) 531, 802, 1401
BshNI GGYRCC 2 cut(s) 2028, 2034
BsiHKAI GWGCWC 2 cut(s) 1869, 2018
BsiHKCI CYCGRG 1 cut(s) 657
BsiSI CCGG 6 cut(s) 335, 409, 1922, 1989, 1997, 2032
BslFI GGGAC 6 cut(s) 339, 585, 644, 795, 970, 1348
BslI CCNNNNNNNGG 7 cut(s) 341, 370, 796, 797, 1481, 1988, 2025
BsmAI GTCTC 6 cut(s) 332, 660, 917, 1092, 2005, 2085
BsmFI GGGAC 6 cut(s) 339, 585, 644, 795, 970, 1348
BsnI GGCC 3 cut(s) 531, 802, 1401
Bso31I GGTCTC 2 cut(s) 660, 2005
BsoBI CYCGRG 1 cut(s) 657
Bsp1286I GDGCHC 3 cut(s) 458, 1869, 2018
Bsp1407I TGTACA 1 cut(s) 1429
Bsp143I GATC 5 cut(s) 265, 348, 595, 1012, 1926
BspANI GGCC 3 cut(s) 531, 802, 1401
BspCNI CTCAG 9 cut(s) 37, 100, 433, 973, 1342, 1618, 1744, 1917, 1959
BspFNI CGCG 3 cut(s) 139, 347, 2026
BspLI GGNNCC 8 cut(s) 402, 719, 783, 801, 1958, 2010, 2030, 2036
BspPI GGATC 2 cut(s) 273, 1007
BspT107I GGYRCC 2 cut(s) 2028, 2034
BspTI CTTAAG 1 cut(s) 1082
BspTNI GGTCTC 2 cut(s) 660, 2005
BsrBI CCGCTC 1 cut(s) 2056
BsrFI RCCGGY 1 cut(s) 2031
BsrGI TGTACA 1 cut(s) 1429
BsrI ACTGG 2 cut(s) 186, 318
BssAI RCCGGY 1 cut(s) 2031
BssECI CCNNGG 4 cut(s) 1912, 2004, 2024, 2084
BssMI GATC 5 cut(s) 265, 348, 595, 1012, 1926
BssNI GRCGYC 1 cut(s) 468
BssSI CACGAG 2 cut(s) 393, 547
Bst2BI CACGAG 2 cut(s) 393, 547
Bst2UI CCWGG 2 cut(s) 1913, 1954
Bst4CI ACNGT 4 cut(s) 494, 1177, 1339, 2092
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 468
BstAFI CTTAAG 1 cut(s) 1082
BstAUI TGTACA 1 cut(s) 1429
BstC8I GCNNGC 1 cut(s) 247
BstDSI CCRYGG 2 cut(s) 2024, 2084
BstEII GGTNACC 1 cut(s) 1916
BstENI CCTNNNNNAGG 1 cut(s) 368
BstFNI CGCG 3 cut(s) 139, 347, 2026
BstHHI GCGC 3 cut(s) 141, 347, 1877
BstKTI GATC 5 cut(s) 268, 351, 598, 1015, 1929
BstMAI GTCTC 6 cut(s) 332, 660, 917, 1092, 2005, 2085
BstMBI GATC 5 cut(s) 265, 348, 595, 1012, 1926
BstMWI GCNNNNNNNGC 6 cut(s) 643, 976, 1847, 1883, 2032, 2062
BstNI CCWGG 2 cut(s) 1913, 1954
BstNSI RCATGY 1 cut(s) 896
BstPAI GACNNNNGTC 1 cut(s) 1914
BstPI GGTNACC 1 cut(s) 1916
BstSCI CCNGG 3 cut(s) 1911, 1920, 1952
BstSFI CTRYAG 2 cut(s) 806, 1855
BstUI CGCG 3 cut(s) 139, 347, 2026
BstV1I GCAGC 4 cut(s) 70, 1523, 1595, 1828
BstV2I GAAGAC 2 cut(s) 839, 1215
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuI GTATCC 1 cut(s) 805
BsuRI GGCC 3 cut(s) 531, 802, 1401
BtgI CCRYGG 2 cut(s) 2024, 2084
BtgZI GCGATG 1 cut(s) 234
BtrI CACGTC 2 cut(s) 203, 755
BtsI GCAGTG 2 cut(s) 432, 1452
BtsIMutI CAGTG 5 cut(s) 311, 363, 432, 968, 1452
Cac8I GCNNGC 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 1966
CfoI GCGC 3 cut(s) 141, 347, 1877
Cfr10I RCCGGY 1 cut(s) 2031
Cfr13I GGNCC 5 cut(s) 361, 718, 782, 800, 2088
Cfr42I CCGCGG 1 cut(s) 2027
Csp6I GTAC 5 cut(s) 30, 386, 1430, 1569, 1603
CviAII CATG 8 cut(s) 352, 893, 910, 1307, 1433, 1441, 1817, 1847
CviQI GTAC 5 cut(s) 30, 386, 1430, 1569, 1603
DpnI GATC 5 cut(s) 267, 350, 597, 1014, 1928
DpnII GATC 5 cut(s) 265, 348, 595, 1012, 1926
DraI TTTAAA 1 cut(s) 1383
DrdI GACNNNNNNGTC 1 cut(s) 841
DseDI GACNNNNNNGTC 1 cut(s) 841
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 2016
Eco24I GRGCYC 2 cut(s) 458, 2018
Eco31I GGTCTC 2 cut(s) 660, 2005
Eco47I GGWCC 4 cut(s) 361, 718, 782, 2088
Eco53kI GAGCTC 1 cut(s) 2016
Eco57I CTGAAG 2 cut(s) 266, 498
Eco88I CYCGRG 1 cut(s) 657
Eco91I GGTNACC 1 cut(s) 1916
EcoICRI GAGCTC 1 cut(s) 2016
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoO109I RGGNCCY 2 cut(s) 782, 800
EcoO65I GGTNACC 1 cut(s) 1916
EcoRII CCWGG 2 cut(s) 1911, 1952
EcoT38I GRGCYC 2 cut(s) 458, 2018
FaeI CATG 8 cut(s) 355, 896, 913, 1310, 1436, 1444, 1820, 1850
FaqI GGGAC 6 cut(s) 339, 585, 644, 795, 970, 1348
FatI CATG 8 cut(s) 351, 892, 909, 1306, 1432, 1440, 1816, 1846
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 9 cut(s) 81, 84, 971, 1512, 1581, 1584, 1842, 1884, 2027
FriOI GRGCYC 2 cut(s) 458, 2018
Fsp4HI GCNGC 9 cut(s) 81, 84, 971, 1512, 1581, 1584, 1842, 1884, 2027
FspBI CTAG 4 cut(s) 177, 569, 992, 1458
GlaI GCGC 3 cut(s) 140, 346, 1876
GluI GCNGC 9 cut(s) 81, 84, 971, 1512, 1581, 1584, 1842, 1884, 2027
GsuI CTGGAG 3 cut(s) 1175, 1458, 1883
HaeIII GGCC 3 cut(s) 531, 802, 1401
HapII CCGG 6 cut(s) 335, 409, 1922, 1989, 1997, 2032
HhaI GCGC 3 cut(s) 141, 347, 1877
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 8 cut(s) 355, 896, 913, 1310, 1436, 1444, 1820, 1850
Hin6I GCGC 3 cut(s) 139, 345, 1875
HinP1I GCGC 3 cut(s) 139, 345, 1875
HincII GTYRAC 2 cut(s) 1070, 1409
HindII GTYRAC 2 cut(s) 1070, 1409
HpaII CCGG 6 cut(s) 335, 409, 1922, 1989, 1997, 2032
HphI GGTGA 9 cut(s) 781, 875, 1111, 1448, 1535, 1558, 1605, 1844, 1910
Hpy188III TCNNGA 8 cut(s) 521, 657, 846, 935, 1154, 1475, 1652, 1826
Hpy99I CGWCG 1 cut(s) 1827
HpyAV CCTTC 7 cut(s) 618, 686, 1101, 1160, 1356, 1486, 1823
HpyCH4III ACNGT 4 cut(s) 494, 1177, 1339, 2092
HpyCH4IV ACGT 8 cut(s) 143, 202, 235, 328, 468, 754, 1411, 1571
HpyCH4V TGCA 8 cut(s) 123, 637, 1130, 1637, 1850, 1932, 1940, 2100
HpyF10VI GCNNNNNNNGC 6 cut(s) 643, 976, 1847, 1883, 2032, 2062
HpySE526I ACGT 8 cut(s) 143, 202, 235, 328, 468, 754, 1411, 1571
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 8 cut(s) 355, 896, 913, 1310, 1436, 1444, 1820, 1850
HspAI GCGC 3 cut(s) 139, 345, 1875
KspI CCGCGG 1 cut(s) 2027
Kzo9I GATC 5 cut(s) 265, 348, 595, 1012, 1926
LmnI GCTCC 5 cut(s) 13, 1864, 2014, 2021, 2061
Lsp1109I GCAGC 4 cut(s) 70, 1523, 1595, 1828
LweI GCATC 3 cut(s) 550, 895, 1730
MaeI CTAG 4 cut(s) 177, 569, 992, 1458
MaeII ACGT 8 cut(s) 143, 202, 235, 328, 468, 754, 1411, 1571
MalI GATC 5 cut(s) 267, 350, 597, 1014, 1928
MbiI CCGCTC 1 cut(s) 2056
MboI GATC 5 cut(s) 265, 348, 595, 1012, 1926
MboII GAAGA 6 cut(s) 272, 491, 494, 844, 1220, 1252
MfeI CAATTG 1 cut(s) 1718
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 3 cut(s) 458, 1869, 2018
MlyI GAGTC 7 cut(s) 299, 412, 932, 952, 1075, 1703, 1892
MmeI TCCRAC 3 cut(s) 559, 854, 1801
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 6 cut(s) 617, 1083, 1095, 1382, 1497, 1641
MslI CAYNNNNRTG 2 cut(s) 356, 1445
MspA1I CMGCKG 1 cut(s) 2026
MspCI CTTAAG 1 cut(s) 1082
MspI CCGG 6 cut(s) 335, 409, 1922, 1989, 1997, 2032
MspR9I CCNGG 3 cut(s) 1913, 1922, 1954
MunI CAATTG 1 cut(s) 1718
MvaI CCWGG 2 cut(s) 1913, 1954
MvnI CGCG 3 cut(s) 139, 347, 2026
MwoI GCNNNNNNNGC 6 cut(s) 643, 976, 1847, 1883, 2032, 2062
NciI CCSGG 1 cut(s) 1922
NdeII GATC 5 cut(s) 265, 348, 595, 1012, 1926
NlaIII CATG 8 cut(s) 355, 896, 913, 1310, 1436, 1444, 1820, 1850
NlaIV GGNNCC 8 cut(s) 402, 719, 783, 801, 1958, 2010, 2030, 2036
NmuCI GTSAC 4 cut(s) 1436, 1546, 1832, 1916
NspI RCATGY 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 4 cut(s) 710, 1036, 1468, 1761
PkrI GCNGC 9 cut(s) 82, 85, 972, 1513, 1582, 1585, 1843, 1885, 2028
PleI GAGTC 7 cut(s) 298, 412, 932, 952, 1074, 1702, 1892
PpsI GAGTC 7 cut(s) 298, 412, 932, 952, 1074, 1702, 1892
PpuMI RGGWCCY 1 cut(s) 782
PshAI GACNNNNGTC 1 cut(s) 1914
Psp124BI GAGCTC 1 cut(s) 2018
Psp1406I AACGTT 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 782
Psp6I CCWGG 2 cut(s) 1911, 1952
PspEI GGTNACC 1 cut(s) 1916
PspGI CCWGG 2 cut(s) 1911, 1952
PspN4I GGNNCC 8 cut(s) 402, 719, 783, 801, 1958, 2010, 2030, 2036
PspPI GGNCC 5 cut(s) 361, 718, 782, 800, 2088
PspPPI RGGWCCY 1 cut(s) 782
PsrI GAACNNNNNNTAC 2 cut(s) 1586, 1618
PstNI CAGNNNCTG 1 cut(s) 1966
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 5 cut(s) 31, 387, 1431, 1570, 1604
RsaNI GTAC 5 cut(s) 30, 386, 1430, 1569, 1603
RseI CAYNNNNRTG 2 cut(s) 356, 1445
SacI GAGCTC 1 cut(s) 2018
SacII CCGCGG 1 cut(s) 2027
SaqAI TTAA 6 cut(s) 617, 1083, 1095, 1382, 1497, 1641
SatI GCNGC 9 cut(s) 81, 84, 971, 1512, 1581, 1584, 1842, 1884, 2027
Sau3AI GATC 5 cut(s) 265, 348, 595, 1012, 1926
Sau96I GGNCC 5 cut(s) 361, 718, 782, 800, 2088
SchI GAGTC 7 cut(s) 299, 412, 932, 952, 1075, 1703, 1892
ScrFI CCNGG 3 cut(s) 1913, 1922, 1954
SduI GDGCHC 3 cut(s) 458, 1869, 2018
SfaNI GCATC 3 cut(s) 550, 895, 1730
SfcI CTRYAG 2 cut(s) 806, 1855
Sfr274I CTCGAG 1 cut(s) 657
Sfr303I CCGCGG 1 cut(s) 2027
SgrBI CCGCGG 1 cut(s) 2027
SinI GGWCC 4 cut(s) 361, 718, 782, 2088
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 356, 1445
SmlI CTYRAG 6 cut(s) 657, 794, 980, 1082, 1117, 1744
SmoI CTYRAG 6 cut(s) 657, 794, 980, 1082, 1117, 1744
SspI AATATT 1 cut(s) 988
SspMI CTAG 4 cut(s) 177, 569, 992, 1458
SstI GAGCTC 1 cut(s) 2018
StyD4I CCNGG 3 cut(s) 1911, 1920, 1952
TaaI ACNGT 4 cut(s) 494, 1177, 1339, 2092
TaiI ACGT 8 cut(s) 146, 205, 238, 331, 471, 757, 1414, 1574
TaqI TCGA 2 cut(s) 658, 884
TatI WGTACW 1 cut(s) 1429
TauI GCSGC 5 cut(s) 83, 973, 1583, 1886, 2029
TfiI GAWTC 4 cut(s) 710, 1036, 1468, 1761
Tru1I TTAA 6 cut(s) 617, 1083, 1095, 1382, 1497, 1641
Tru9I TTAA 6 cut(s) 617, 1083, 1095, 1382, 1497, 1641
TscAI CASTG 5 cut(s) 318, 363, 432, 968, 1452
TseFI GTSAC 4 cut(s) 1436, 1546, 1832, 1916
TseI GCWGC 4 cut(s) 83, 1511, 1583, 1841
Tsp45I GTSAC 4 cut(s) 1436, 1546, 1832, 1916
TspDTI ATGAA 7 cut(s) 202, 287, 600, 1049, 1179, 1323, 1575
TspGWI ACGGA 1 cut(s) 2073
TspRI CASTG 5 cut(s) 318, 363, 432, 968, 1452
Vha464I CTTAAG 1 cut(s) 1082
VpaK11BI GGWCC 4 cut(s) 361, 718, 782, 2088
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 4 cut(s) 107, 512, 1376, 1562
XceI RCATGY 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XhoI CTCGAG 1 cut(s) 657
XmiI GTMKAC 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 4 cut(s) 177, 569, 992, 1458
ZraI GACGTC 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.