Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 110, 517 |
| AclWI | GGATC | 3 cut(s) | 41, 54, 140 |
| AcoI | YGGCCR | 1 cut(s) | 217 |
| AfaI | GTAC | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 863 |
| AgsI | TTSAA | 5 cut(s) | 166, 406, 649, 826, 837 |
| AjiI | CACGTC | 1 cut(s) | 785 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AluBI | AGCT | 3 cut(s) | 340, 622, 812 |
| AluI | AGCT | 3 cut(s) | 340, 622, 812 |
| Alw21I | GWGCWC | 1 cut(s) | 935 |
| Alw26I | GTCTC | 1 cut(s) | 467 |
| AlwI | GGATC | 3 cut(s) | 41, 54, 140 |
| Ama87I | CYCGRG | 1 cut(s) | 367 |
| AoxI | GGCC | 3 cut(s) | 127, 217, 624 |
| ApeKI | GCWGC | 1 cut(s) | 340 |
| AseI | ATTAAT | 2 cut(s) | 240, 557 |
| AspLEI | GCGC | 1 cut(s) | 522 |
| AsuC2I | CCSGG | 1 cut(s) | 858 |
| AsuHPI | GGTGA | 2 cut(s) | 476, 759 |
| AsuNHI | GCTAGC | 1 cut(s) | 812 |
| AvaI | CYCGRG | 1 cut(s) | 367 |
| AxyI | CCTNAGG | 1 cut(s) | 83 |
| BaeGI | GKGCMC | 1 cut(s) | 657 |
| BalI | TGGCCA | 1 cut(s) | 219 |
| BamHI | GGATCC | 1 cut(s) | 46 |
| BbsI | GAAGAC | 1 cut(s) | 302 |
| Bbv12I | GWGCWC | 1 cut(s) | 935 |
| BbvI | GCAGC | 1 cut(s) | 327 |
| BccI | CCATC | 6 cut(s) | 37, 254, 285, 455, 665, 947 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 865, 899 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BcnI | CCSGG | 1 cut(s) | 858 |
| BcoDI | GTCTC | 1 cut(s) | 467 |
| BfaI | CTAG | 2 cut(s) | 693, 813 |
| BisI | GCNGC | 2 cut(s) | 341, 518 |
| BlsI | GCNGC | 2 cut(s) | 342, 519 |
| Bme1390I | CCNGG | 2 cut(s) | 248, 858 |
| BmeT110I | CYCGRG | 1 cut(s) | 367 |
| BmgBI | CACGTC | 1 cut(s) | 785 |
| BmiI | GGNNCC | 4 cut(s) | 48, 114, 396, 634 |
| BmrFI | CCNGG | 2 cut(s) | 248, 858 |
| BmsI | GCATC | 1 cut(s) | 691 |
| BmtI | GCTAGC | 1 cut(s) | 816 |
| BpiI | GAAGAC | 1 cut(s) | 302 |
| BpuMI | CCSGG | 1 cut(s) | 858 |
| BsaJI | CCNNGG | 1 cut(s) | 738 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 593, 623 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 863 |
| Bse1I | ACTGG | 2 cut(s) | 481, 531 |
| Bse21I | CCTNAGG | 1 cut(s) | 83 |
| Bse3DI | GCAATG | 1 cut(s) | 964 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseDI | CCNNGG | 1 cut(s) | 738 |
| BseGI | GGATG | 3 cut(s) | 48, 706, 958 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 863 |
| BseMI | GCAATG | 1 cut(s) | 964 |
| BseMII | CTCAG | 4 cut(s) | 80, 97, 122, 173 |
| BseNI | ACTGG | 2 cut(s) | 481, 531 |
| BseRI | GAGGAG | 1 cut(s) | 614 |
| BseSI | GKGCMC | 1 cut(s) | 657 |
| BseXI | GCAGC | 1 cut(s) | 327 |
| BshFI | GGCC | 3 cut(s) | 129, 219, 626 |
| BsiHKAI | GWGCWC | 1 cut(s) | 935 |
| BsiHKCI | CYCGRG | 1 cut(s) | 367 |
| BsiSI | CCGG | 1 cut(s) | 857 |
| BslFI | GGGAC | 2 cut(s) | 795, 843 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 863 |
| BsmAI | GTCTC | 1 cut(s) | 467 |
| BsmFI | GGGAC | 2 cut(s) | 795, 843 |
| BsnI | GGCC | 3 cut(s) | 129, 219, 626 |
| BsoBI | CYCGRG | 1 cut(s) | 367 |
| Bsp1286I | GDGCHC | 2 cut(s) | 657, 935 |
| Bsp143I | GATC | 3 cut(s) | 46, 145, 226 |
| BspACI | CCGC | 2 cut(s) | 110, 517 |
| BspANI | GGCC | 3 cut(s) | 129, 219, 626 |
| BspCNI | CTCAG | 4 cut(s) | 81, 96, 123, 172 |
| BspLI | GGNNCC | 4 cut(s) | 48, 114, 396, 634 |
| BspOI | GCTAGC | 1 cut(s) | 816 |
| BspPI | GGATC | 3 cut(s) | 41, 54, 140 |
| BspQI | GCTCTTC | 1 cut(s) | 904 |
| BsrDI | GCAATG | 1 cut(s) | 964 |
| BsrI | ACTGG | 2 cut(s) | 481, 531 |
| BssECI | CCNNGG | 1 cut(s) | 738 |
| BssMI | GATC | 3 cut(s) | 46, 145, 226 |
| BssT1I | CCWWGG | 1 cut(s) | 738 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 939 |
| Bst6I | CTCTTC | 2 cut(s) | 429, 904 |
| BstC8I | GCNNGC | 3 cut(s) | 624, 814, 849 |
| BstDEI | CTNAG | 4 cut(s) | 83, 89, 131, 159 |
| BstF5I | GGATG | 3 cut(s) | 48, 706, 958 |
| BstHHI | GCGC | 1 cut(s) | 522 |
| BstKTI | GATC | 3 cut(s) | 49, 148, 229 |
| BstMAI | GTCTC | 1 cut(s) | 467 |
| BstMBI | GATC | 3 cut(s) | 46, 145, 226 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 903 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstSCI | CCNGG | 2 cut(s) | 246, 856 |
| BstSLI | GKGCMC | 1 cut(s) | 657 |
| BstV1I | GCAGC | 1 cut(s) | 327 |
| BstV2I | GAAGAC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 1 cut(s) | 46 |
| BstYI | RGATCY | 1 cut(s) | 46 |
| Bsu36I | CCTNAGG | 1 cut(s) | 83 |
| BsuRI | GGCC | 3 cut(s) | 129, 219, 626 |
| BtrI | CACGTC | 1 cut(s) | 785 |
| BtsCI | GGATG | 3 cut(s) | 48, 706, 958 |
| Cac8I | GCNNGC | 3 cut(s) | 624, 814, 849 |
| CfoI | GCGC | 1 cut(s) | 522 |
| CseI | GACGC | 1 cut(s) | 164 |
| Csp6I | GTAC | 1 cut(s) | 331 |
| CviAII | CATG | 3 cut(s) | 221, 230, 966 |
| CviQI | GTAC | 1 cut(s) | 331 |
| DdeI | CTNAG | 4 cut(s) | 83, 89, 131, 159 |
| DpnI | GATC | 3 cut(s) | 48, 147, 228 |
| DpnII | GATC | 3 cut(s) | 46, 145, 226 |
| EaeI | YGGCCR | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 2 cut(s) | 429, 904 |
| EarI | CTCTTC | 2 cut(s) | 429, 904 |
| Eco130I | CCWWGG | 1 cut(s) | 738 |
| Eco147I | AGGCCT | 1 cut(s) | 129 |
| Eco81I | CCTNAGG | 1 cut(s) | 83 |
| Eco88I | CYCGRG | 1 cut(s) | 367 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 738 |
| ErhI | CCWWGG | 1 cut(s) | 738 |
| FaeI | CATG | 3 cut(s) | 224, 233, 969 |
| FaqI | GGGAC | 2 cut(s) | 795, 843 |
| FatI | CATG | 3 cut(s) | 220, 229, 965 |
| FauNDI | CATATG | 1 cut(s) | 355 |
| Fnu4HI | GCNGC | 2 cut(s) | 341, 518 |
| FokI | GGATG | 3 cut(s) | 55, 713, 965 |
| Fsp4HI | GCNGC | 2 cut(s) | 341, 518 |
| FspBI | CTAG | 2 cut(s) | 693, 813 |
| GlaI | GCGC | 1 cut(s) | 521 |
| GluI | GCNGC | 2 cut(s) | 341, 518 |
| HaeIII | GGCC | 3 cut(s) | 129, 219, 626 |
| HapII | CCGG | 1 cut(s) | 857 |
| HgaI | GACGC | 1 cut(s) | 164 |
| HhaI | GCGC | 1 cut(s) | 522 |
| Hin1II | CATG | 3 cut(s) | 224, 233, 969 |
| Hin6I | GCGC | 1 cut(s) | 520 |
| HinP1I | GCGC | 1 cut(s) | 520 |
| HincII | GTYRAC | 3 cut(s) | 102, 363, 441 |
| HindII | GTYRAC | 3 cut(s) | 102, 363, 441 |
| HinfI | GANTC | 5 cut(s) | 93, 442, 566, 726, 764 |
| HpaI | GTTAAC | 2 cut(s) | 102, 363 |
| HpaII | CCGG | 1 cut(s) | 857 |
| HphI | GGTGA | 2 cut(s) | 476, 759 |
| Hpy166II | GTNNAC | 4 cut(s) | 102, 316, 363, 441 |
| Hpy188I | TCNGA | 3 cut(s) | 62, 571, 930 |
| Hpy188III | TCNNGA | 1 cut(s) | 398 |
| Hpy8I | GTNNAC | 4 cut(s) | 102, 316, 363, 441 |
| HpyAV | CCTTC | 7 cut(s) | 59, 474, 745, 772, 784, 820, 943 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 939 |
| HpyCH4IV | ACGT | 2 cut(s) | 299, 784 |
| HpyCH4V | TGCA | 4 cut(s) | 139, 343, 504, 962 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 903 |
| HpyF3I | CTNAG | 4 cut(s) | 83, 89, 131, 159 |
| HpySE526I | ACGT | 2 cut(s) | 299, 784 |
| Hsp92II | CATG | 3 cut(s) | 224, 233, 969 |
| HspAI | GCGC | 1 cut(s) | 520 |
| KspAI | GTTAAC | 2 cut(s) | 102, 363 |
| Kzo9I | GATC | 3 cut(s) | 46, 145, 226 |
| LguI | GCTCTTC | 1 cut(s) | 904 |
| LmnI | GCTCC | 2 cut(s) | 400, 427 |
| Lsp1109I | GCAGC | 1 cut(s) | 327 |
| LweI | GCATC | 1 cut(s) | 691 |
| MaeI | CTAG | 2 cut(s) | 693, 813 |
| MaeII | ACGT | 2 cut(s) | 299, 784 |
| MaeIII | GTNAC | 3 cut(s) | 268, 661, 765 |
| MalI | GATC | 3 cut(s) | 48, 147, 228 |
| MboI | GATC | 3 cut(s) | 46, 145, 226 |
| MboII | GAAGA | 5 cut(s) | 307, 446, 787, 891, 958 |
| MfeI | CAATTG | 1 cut(s) | 446 |
| MflI | RGATCY | 1 cut(s) | 46 |
| MhlI | GDGCHC | 2 cut(s) | 657, 935 |
| MlsI | TGGCCA | 1 cut(s) | 219 |
| MluCI | AATT | 7 cut(s) | 12, 140, 241, 255, 401, 446, 505 |
| MluNI | TGGCCA | 1 cut(s) | 219 |
| MlyI | GAGTC | 2 cut(s) | 436, 773 |
| MmeI | TCCRAC | 1 cut(s) | 74 |
| Mox20I | TGGCCA | 1 cut(s) | 219 |
| MscI | TGGCCA | 1 cut(s) | 219 |
| MseI | TTAA | 5 cut(s) | 101, 240, 362, 557, 890 |
| Msp20I | TGGCCA | 1 cut(s) | 219 |
| MspA1I | CMGCKG | 1 cut(s) | 340 |
| MspI | CCGG | 1 cut(s) | 857 |
| MspR9I | CCNGG | 2 cut(s) | 248, 858 |
| MunI | CAATTG | 1 cut(s) | 446 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 903 |
| NciI | CCSGG | 1 cut(s) | 858 |
| NdeI | CATATG | 1 cut(s) | 355 |
| NdeII | GATC | 3 cut(s) | 46, 145, 226 |
| NheI | GCTAGC | 1 cut(s) | 812 |
| NlaIII | CATG | 3 cut(s) | 224, 233, 969 |
| NlaIV | GGNNCC | 4 cut(s) | 48, 114, 396, 634 |
| NmuCI | GTSAC | 1 cut(s) | 765 |
| PceI | AGGCCT | 1 cut(s) | 129 |
| PciSI | GCTCTTC | 1 cut(s) | 904 |
| PfeI | GAWTC | 3 cut(s) | 93, 566, 726 |
| PflFI | GACNNNGTC | 1 cut(s) | 301 |
| PkrI | GCNGC | 2 cut(s) | 342, 519 |
| PleI | GAGTC | 2 cut(s) | 436, 772 |
| PpsI | GAGTC | 2 cut(s) | 436, 772 |
| PshBI | ATTAAT | 2 cut(s) | 240, 557 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 4 cut(s) | 48, 114, 396, 634 |
| PsuI | RGATCY | 1 cut(s) | 46 |
| PsyI | GACNNNGTC | 1 cut(s) | 301 |
| PvuII | CAGCTG | 1 cut(s) | 340 |
| RsaI | GTAC | 1 cut(s) | 332 |
| RsaNI | GTAC | 1 cut(s) | 331 |
| SapI | GCTCTTC | 1 cut(s) | 904 |
| SaqAI | TTAA | 5 cut(s) | 101, 240, 362, 557, 890 |
| SatI | GCNGC | 2 cut(s) | 341, 518 |
| Sau3AI | GATC | 3 cut(s) | 46, 145, 226 |
| SchI | GAGTC | 2 cut(s) | 436, 773 |
| ScrFI | CCNGG | 2 cut(s) | 248, 858 |
| SduI | GDGCHC | 2 cut(s) | 657, 935 |
| SfaNI | GCATC | 1 cut(s) | 691 |
| Sse9I | AATT | 7 cut(s) | 12, 140, 241, 255, 401, 446, 505 |
| SseBI | AGGCCT | 1 cut(s) | 129 |
| SsiI | CCGC | 2 cut(s) | 110, 517 |
| SspI | AATATT | 1 cut(s) | 555 |
| SspMI | CTAG | 2 cut(s) | 693, 813 |
| StuI | AGGCCT | 1 cut(s) | 129 |
| StyD4I | CCNGG | 2 cut(s) | 246, 856 |
| StyI | CCWWGG | 1 cut(s) | 738 |
| TaaI | ACNGT | 2 cut(s) | 55, 939 |
| TaiI | ACGT | 2 cut(s) | 302, 787 |
| TaqI | TCGA | 4 cut(s) | 96, 180, 305, 495 |
| TasI | AATT | 7 cut(s) | 12, 140, 241, 255, 401, 446, 505 |
| TatI | WGTACW | 1 cut(s) | 330 |
| TauI | GCSGC | 1 cut(s) | 520 |
| TfiI | GAWTC | 3 cut(s) | 93, 566, 726 |
| Tru1I | TTAA | 5 cut(s) | 101, 240, 362, 557, 890 |
| Tru9I | TTAA | 5 cut(s) | 101, 240, 362, 557, 890 |
| TseFI | GTSAC | 1 cut(s) | 765 |
| TseI | GCWGC | 1 cut(s) | 340 |
| Tsp45I | GTSAC | 1 cut(s) | 765 |
| TspDTI | ATGAA | 2 cut(s) | 201, 723 |
| TspGWI | ACGGA | 2 cut(s) | 287, 883 |
| Tth111I | GACNNNGTC | 1 cut(s) | 301 |
| VspI | ATTAAT | 2 cut(s) | 240, 557 |
| XspI | CTAG | 2 cut(s) | 693, 813 |