Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 47 - 94 | 8.1e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 130, 243 |
| AccB1I | GGYRCC | 1 cut(s) | 583 |
| AccI | GTMKAC | 1 cut(s) | 64 |
| AciI | CCGC | 1 cut(s) | 446 |
| AclWI | GGATC | 3 cut(s) | 66, 353, 457 |
| AcsI | RAATTY | 1 cut(s) | 203 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AfaI | GTAC | 1 cut(s) | 460 |
| AgeI | ACCGGT | 1 cut(s) | 547 |
| AgsI | TTSAA | 3 cut(s) | 44, 147, 606 |
| AjiI | CACGTC | 1 cut(s) | 580 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 194, 226, 300, 332 |
| AluBI | AGCT | 3 cut(s) | 185, 270, 394 |
| AluI | AGCT | 3 cut(s) | 185, 270, 394 |
| Alw21I | GWGCWC | 1 cut(s) | 272 |
| Alw26I | GTCTC | 1 cut(s) | 556 |
| AlwI | GGATC | 3 cut(s) | 66, 353, 457 |
| ApeKI | GCWGC | 1 cut(s) | 182 |
| ApoI | RAATTY | 1 cut(s) | 203 |
| AsiGI | ACCGGT | 1 cut(s) | 547 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 687 |
| AspLEI | GCGC | 1 cut(s) | 558 |
| AspS9I | GGNCC | 1 cut(s) | 518 |
| AsuC2I | CCSGG | 2 cut(s) | 522, 648 |
| AsuHPI | GGTGA | 1 cut(s) | 503 |
| AvaII | GGWCC | 1 cut(s) | 518 |
| BanI | GGYRCC | 1 cut(s) | 583 |
| BanII | GRGCYC | 2 cut(s) | 19, 272 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 313, 345 |
| Bbv12I | GWGCWC | 1 cut(s) | 272 |
| BbvI | GCAGC | 1 cut(s) | 194 |
| BccI | CCATC | 6 cut(s) | 156, 179, 318, 425, 499, 509 |
| BciVI | GTATCC | 1 cut(s) | 134 |
| BclI | TGATCA | 1 cut(s) | 706 |
| BcnI | CCSGG | 2 cut(s) | 522, 648 |
| BcoDI | GTCTC | 1 cut(s) | 556 |
| BfaI | CTAG | 1 cut(s) | 692 |
| BfoI | RGCGCY | 1 cut(s) | 559 |
| BfuAI | ACCTGC | 2 cut(s) | 130, 243 |
| BfuI | GTATCC | 1 cut(s) | 134 |
| BisI | GCNGC | 1 cut(s) | 183 |
| BlsI | GCNGC | 1 cut(s) | 184 |
| Bme1390I | CCNGG | 2 cut(s) | 522, 648 |
| Bme18I | GGWCC | 1 cut(s) | 518 |
| BmgBI | CACGTC | 1 cut(s) | 580 |
| BmgT120I | GGNCC | 1 cut(s) | 518 |
| BmiI | GGNNCC | 2 cut(s) | 543, 585 |
| BmrFI | CCNGG | 2 cut(s) | 522, 648 |
| BmsI | GCATC | 2 cut(s) | 232, 685 |
| BpmI | CTGGAG | 1 cut(s) | 488 |
| Bpu10I | CCTNAGC | 1 cut(s) | 339 |
| BpuMI | CCSGG | 2 cut(s) | 522, 648 |
| BsaBI | GATNNNNATC | 2 cut(s) | 57, 711 |
| BsaWI | WCCGGW | 2 cut(s) | 207, 547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 75, 105 |
| Bse118I | RCCGGY | 1 cut(s) | 547 |
| Bse1I | ACTGG | 1 cut(s) | 471 |
| Bse8I | GATNNNNATC | 2 cut(s) | 57, 711 |
| BseGI | GGATG | 1 cut(s) | 349 |
| BseJI | GATNNNNATC | 2 cut(s) | 57, 711 |
| BseNI | ACTGG | 1 cut(s) | 471 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BseXI | GCAGC | 1 cut(s) | 194 |
| BseYI | CCCAGC | 1 cut(s) | 185 |
| Bsh1285I | CGRYCG | 1 cut(s) | 197 |
| BshNI | GGYRCC | 1 cut(s) | 583 |
| BshTI | ACCGGT | 1 cut(s) | 547 |
| BsiEI | CGRYCG | 1 cut(s) | 197 |
| BsiHKAI | GWGCWC | 1 cut(s) | 272 |
| BsiSI | CCGG | 5 cut(s) | 208, 521, 548, 559, 647 |
| BsmAI | GTCTC | 1 cut(s) | 556 |
| BsmBI | CGTCTC | 1 cut(s) | 556 |
| Bsp1286I | GDGCHC | 2 cut(s) | 19, 272 |
| Bsp143I | GATC | 4 cut(s) | 58, 358, 449, 706 |
| BspACI | CCGC | 1 cut(s) | 446 |
| BspLI | GGNNCC | 2 cut(s) | 543, 585 |
| BspMI | ACCTGC | 2 cut(s) | 130, 243 |
| BspPI | GGATC | 3 cut(s) | 66, 353, 457 |
| BspT107I | GGYRCC | 1 cut(s) | 583 |
| BsrFI | RCCGGY | 1 cut(s) | 547 |
| BsrI | ACTGG | 1 cut(s) | 471 |
| BssAI | RCCGGY | 1 cut(s) | 547 |
| BssMI | GATC | 4 cut(s) | 58, 358, 449, 706 |
| BssNAI | GTATAC | 1 cut(s) | 65 |
| Bst1107I | GTATAC | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 3 cut(s) | 195, 372, 488 |
| BstC8I | GCNNGC | 1 cut(s) | 336 |
| BstDEI | CTNAG | 2 cut(s) | 20, 339 |
| BstEII | GGTNACC | 2 cut(s) | 31, 166 |
| BstF5I | GGATG | 1 cut(s) | 349 |
| BstH2I | RGCGCY | 1 cut(s) | 559 |
| BstHHI | GCGC | 1 cut(s) | 558 |
| BstKTI | GATC | 4 cut(s) | 61, 361, 452, 709 |
| BstMAI | GTCTC | 1 cut(s) | 556 |
| BstMBI | GATC | 4 cut(s) | 58, 358, 449, 706 |
| BstMCI | CGRYCG | 1 cut(s) | 197 |
| BstPI | GGTNACC | 2 cut(s) | 31, 166 |
| BstSCI | CCNGG | 2 cut(s) | 520, 646 |
| BstV1I | GCAGC | 1 cut(s) | 194 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 178 |
| BstZ17I | GTATAC | 1 cut(s) | 65 |
| BsuI | GTATCC | 1 cut(s) | 134 |
| BtrI | CACGTC | 1 cut(s) | 580 |
| BtsCI | GGATG | 1 cut(s) | 349 |
| BveI | ACCTGC | 2 cut(s) | 130, 243 |
| Cac8I | GCNNGC | 1 cut(s) | 336 |
| CfoI | GCGC | 1 cut(s) | 558 |
| Cfr10I | RCCGGY | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 1 cut(s) | 518 |
| Csp6I | GTAC | 1 cut(s) | 459 |
| CspAI | ACCGGT | 1 cut(s) | 547 |
| CviAII | CATG | 1 cut(s) | 263 |
| CviJI | RGCY | 7 cut(s) | 10, 17, 185, 270, 394, 542, 638 |
| CviKI_1 | RGCY | 7 cut(s) | 10, 17, 185, 270, 394, 542, 638 |
| CviQI | GTAC | 1 cut(s) | 459 |
| DdeI | CTNAG | 2 cut(s) | 20, 339 |
| DpnI | GATC | 4 cut(s) | 60, 360, 451, 708 |
| DpnII | GATC | 4 cut(s) | 58, 358, 449, 706 |
| Ecl136II | GAGCTC | 1 cut(s) | 270 |
| Eco24I | GRGCYC | 2 cut(s) | 19, 272 |
| Eco47I | GGWCC | 1 cut(s) | 518 |
| Eco53kI | GAGCTC | 1 cut(s) | 270 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| Eco91I | GGTNACC | 2 cut(s) | 31, 166 |
| EcoICRI | GAGCTC | 1 cut(s) | 270 |
| EcoO65I | GGTNACC | 2 cut(s) | 31, 166 |
| EcoT38I | GRGCYC | 2 cut(s) | 19, 272 |
| Esp3I | CGTCTC | 1 cut(s) | 556 |
| FaeI | CATG | 1 cut(s) | 266 |
| FaiI | YATR | 5 cut(s) | 65, 219, 264, 288, 711 |
| FatI | CATG | 1 cut(s) | 262 |
| FauI | CCCGC | 1 cut(s) | 439 |
| FbaI | TGATCA | 1 cut(s) | 706 |
| FblI | GTMKAC | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 1 cut(s) | 183 |
| FokI | GGATG | 1 cut(s) | 356 |
| FriOI | GRGCYC | 2 cut(s) | 19, 272 |
| Fsp4HI | GCNGC | 1 cut(s) | 183 |
| FspBI | CTAG | 1 cut(s) | 692 |
| GlaI | GCGC | 1 cut(s) | 557 |
| GluI | GCNGC | 1 cut(s) | 183 |
| GsaI | CCCAGC | 1 cut(s) | 189 |
| GsuI | CTGGAG | 1 cut(s) | 488 |
| HaeII | RGCGCY | 1 cut(s) | 559 |
| HapII | CCGG | 5 cut(s) | 208, 521, 548, 559, 647 |
| HhaI | GCGC | 1 cut(s) | 558 |
| Hin1II | CATG | 1 cut(s) | 266 |
| Hin6I | GCGC | 1 cut(s) | 556 |
| HinP1I | GCGC | 1 cut(s) | 556 |
| HinfI | GANTC | 3 cut(s) | 53, 617, 673 |
| HpaII | CCGG | 5 cut(s) | 208, 521, 548, 559, 647 |
| HphI | GGTGA | 1 cut(s) | 503 |
| Hpy166II | GTNNAC | 2 cut(s) | 65, 383 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 199, 682 |
| Hpy188III | TCNNGA | 2 cut(s) | 475, 692 |
| Hpy8I | GTNNAC | 2 cut(s) | 65, 383 |
| HpyAV | CCTTC | 3 cut(s) | 472, 612, 677 |
| HpyCH4III | ACNGT | 3 cut(s) | 195, 372, 488 |
| HpyCH4IV | ACGT | 2 cut(s) | 579, 630 |
| HpyCH4V | TGCA | 3 cut(s) | 139, 376, 698 |
| HpyF3I | CTNAG | 2 cut(s) | 20, 339 |
| HpySE526I | ACGT | 2 cut(s) | 579, 630 |
| Hsp92II | CATG | 1 cut(s) | 266 |
| HspAI | GCGC | 1 cut(s) | 556 |
| Ksp22I | TGATCA | 1 cut(s) | 706 |
| Kzo9I | GATC | 4 cut(s) | 58, 358, 449, 706 |
| LmnI | GCTCC | 1 cut(s) | 547 |
| Lsp1109I | GCAGC | 1 cut(s) | 194 |
| LweI | GCATC | 2 cut(s) | 232, 685 |
| MaeI | CTAG | 1 cut(s) | 692 |
| MaeII | ACGT | 2 cut(s) | 579, 630 |
| MaeIII | GTNAC | 4 cut(s) | 31, 166, 189, 491 |
| MalI | GATC | 4 cut(s) | 60, 360, 451, 708 |
| MboI | GATC | 4 cut(s) | 58, 358, 449, 706 |
| MboII | GAAGA | 5 cut(s) | 62, 110, 320, 333, 585 |
| MhlI | GDGCHC | 2 cut(s) | 19, 272 |
| MluCI | AATT | 2 cut(s) | 203, 589 |
| MmeI | TCCRAC | 3 cut(s) | 177, 192, 516 |
| MnlI | CCTC | 9 cut(s) | 19, 22, 77, 91, 105, 286, 475, 532, 654 |
| MroXI | GAANNNNTTC | 1 cut(s) | 687 |
| MseI | TTAA | 3 cut(s) | 419, 552, 657 |
| MspA1I | CMGCKG | 1 cut(s) | 185 |
| MspI | CCGG | 5 cut(s) | 208, 521, 548, 559, 647 |
| MspR9I | CCNGG | 2 cut(s) | 522, 648 |
| NciI | CCSGG | 2 cut(s) | 522, 648 |
| NdeII | GATC | 4 cut(s) | 58, 358, 449, 706 |
| NlaIII | CATG | 1 cut(s) | 266 |
| NlaIV | GGNNCC | 2 cut(s) | 543, 585 |
| NmuCI | GTSAC | 1 cut(s) | 491 |
| PdmI | GAANNNNTTC | 1 cut(s) | 687 |
| PfeI | GAWTC | 3 cut(s) | 53, 617, 673 |
| PfoI | TCCNGGA | 1 cut(s) | 646 |
| PinAI | ACCGGT | 1 cut(s) | 547 |
| PkrI | GCNGC | 1 cut(s) | 184 |
| Psp124BI | GAGCTC | 1 cut(s) | 272 |
| PspEI | GGTNACC | 2 cut(s) | 31, 166 |
| PspFI | CCCAGC | 1 cut(s) | 185 |
| PspN4I | GGNNCC | 2 cut(s) | 543, 585 |
| PspPI | GGNCC | 1 cut(s) | 518 |
| PvuII | CAGCTG | 1 cut(s) | 185 |
| RsaI | GTAC | 1 cut(s) | 460 |
| RsaNI | GTAC | 1 cut(s) | 459 |
| SacI | GAGCTC | 1 cut(s) | 272 |
| SaqAI | TTAA | 3 cut(s) | 419, 552, 657 |
| SatI | GCNGC | 1 cut(s) | 183 |
| Sau3AI | GATC | 4 cut(s) | 58, 358, 449, 706 |
| Sau96I | GGNCC | 1 cut(s) | 518 |
| ScrFI | CCNGG | 2 cut(s) | 522, 648 |
| SduI | GDGCHC | 2 cut(s) | 19, 272 |
| SfaNI | GCATC | 2 cut(s) | 232, 685 |
| SinI | GGWCC | 1 cut(s) | 518 |
| Sse9I | AATT | 2 cut(s) | 203, 589 |
| SsiI | CCGC | 1 cut(s) | 446 |
| SspMI | CTAG | 1 cut(s) | 692 |
| SstI | GAGCTC | 1 cut(s) | 272 |
| StyD4I | CCNGG | 2 cut(s) | 520, 646 |
| TaaI | ACNGT | 3 cut(s) | 195, 372, 488 |
| TaiI | ACGT | 2 cut(s) | 582, 633 |
| TaqI | TCGA | 3 cut(s) | 390, 463, 474 |
| TasI | AATT | 2 cut(s) | 203, 589 |
| TfiI | GAWTC | 3 cut(s) | 53, 617, 673 |
| Tru1I | TTAA | 3 cut(s) | 419, 552, 657 |
| Tru9I | TTAA | 3 cut(s) | 419, 552, 657 |
| TseFI | GTSAC | 1 cut(s) | 491 |
| TseI | GCWGC | 1 cut(s) | 182 |
| Tsp45I | GTSAC | 1 cut(s) | 491 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 3 cut(s) | 446, 522, 580 |
| VpaK11BI | GGWCC | 1 cut(s) | 518 |
| XapI | RAATTY | 1 cut(s) | 203 |
| XbaI | TCTAGA | 1 cut(s) | 691 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 159 |
| XmiI | GTMKAC | 1 cut(s) | 64 |
| XmnI | GAANNNNTTC | 1 cut(s) | 687 |
| XspI | CTAG | 1 cut(s) | 692 |