ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 32 - 103 | 1.8e-07 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 478 |
| AccIII | TCCGGA | 1 cut(s) | 534 |
| AciI | CCGC | 1 cut(s) | 38 |
| AcuI | CTGAAG | 1 cut(s) | 518 |
| AfaI | GTAC | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 83, 398, 523 |
| AjiI | CACGTC | 1 cut(s) | 23 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 418, 450 |
| AluBI | AGCT | 1 cut(s) | 160 |
| AluI | AGCT | 1 cut(s) | 160 |
| Aor13HI | TCCGGA | 1 cut(s) | 534 |
| AoxI | GGCC | 1 cut(s) | 382 |
| ApeKI | GCWGC | 2 cut(s) | 32, 35 |
| AseI | ATTAAT | 1 cut(s) | 540 |
| AspLEI | GCGC | 1 cut(s) | 28 |
| AspS9I | GGNCC | 2 cut(s) | 166, 532 |
| AsuC2I | CCSGG | 1 cut(s) | 338 |
| AsuHPI | GGTGA | 3 cut(s) | 382, 388, 538 |
| AvaII | GGWCC | 2 cut(s) | 166, 532 |
| BbsI | GAAGAC | 1 cut(s) | 51 |
| BbvI | GCAGC | 2 cut(s) | 44, 47 |
| BccI | CCATC | 6 cut(s) | 106, 314, 343, 391, 516, 523 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 391, 425 |
| BclI | TGATCA | 1 cut(s) | 54 |
| BcnI | CCSGG | 1 cut(s) | 338 |
| BglII | AGATCT | 1 cut(s) | 363 |
| BisI | GCNGC | 3 cut(s) | 33, 36, 39 |
| BlsI | GCNGC | 3 cut(s) | 34, 37, 40 |
| Bme1390I | CCNGG | 1 cut(s) | 338 |
| Bme18I | GGWCC | 2 cut(s) | 166, 532 |
| BmgBI | CACGTC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 2 cut(s) | 166, 532 |
| BmiI | GGNNCC | 2 cut(s) | 167, 274 |
| BmrFI | CCNGG | 1 cut(s) | 338 |
| BoxI | GACNNNNGTC | 1 cut(s) | 443 |
| BpiI | GAAGAC | 1 cut(s) | 51 |
| BpuMI | CCSGG | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 1 cut(s) | 278 |
| BsaWI | WCCGGW | 1 cut(s) | 534 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 134, 164 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 83, 398, 523 |
| BseAI | TCCGGA | 1 cut(s) | 534 |
| BseDI | CCNNGG | 1 cut(s) | 278 |
| BseGI | GGATG | 2 cut(s) | 117, 325 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 83, 398, 523 |
| BseMII | CTCAG | 1 cut(s) | 69 |
| BseRI | GAGGAG | 2 cut(s) | 368, 501 |
| BseXI | GCAGC | 2 cut(s) | 44, 47 |
| BsgI | GTGCAG | 1 cut(s) | 287 |
| Bsh1285I | CGRYCG | 1 cut(s) | 10 |
| BshFI | GGCC | 1 cut(s) | 384 |
| BsiEI | CGRYCG | 1 cut(s) | 10 |
| BsiSI | CCGG | 2 cut(s) | 337, 535 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 83, 398, 523 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsnI | GGCC | 1 cut(s) | 384 |
| Bsp13I | TCCGGA | 1 cut(s) | 534 |
| Bsp143I | GATC | 3 cut(s) | 54, 363, 408 |
| Bsp19I | CCATGG | 1 cut(s) | 278 |
| BspACI | CCGC | 1 cut(s) | 38 |
| BspANI | GGCC | 1 cut(s) | 384 |
| BspCNI | CTCAG | 1 cut(s) | 70 |
| BspEI | TCCGGA | 1 cut(s) | 534 |
| BspLI | GGNNCC | 2 cut(s) | 167, 274 |
| BssECI | CCNNGG | 1 cut(s) | 278 |
| BssMI | GATC | 3 cut(s) | 54, 363, 408 |
| BssT1I | CCWWGG | 1 cut(s) | 278 |
| BstC8I | GCNNGC | 1 cut(s) | 30 |
| BstDEI | CTNAG | 1 cut(s) | 78 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 2 cut(s) | 117, 325 |
| BstHHI | GCGC | 1 cut(s) | 28 |
| BstKTI | GATC | 3 cut(s) | 57, 366, 411 |
| BstMBI | GATC | 3 cut(s) | 54, 363, 408 |
| BstMCI | CGRYCG | 1 cut(s) | 10 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 38 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 443 |
| BstSCI | CCNGG | 1 cut(s) | 336 |
| BstV1I | GCAGC | 2 cut(s) | 44, 47 |
| BstV2I | GAAGAC | 1 cut(s) | 51 |
| BstX2I | RGATCY | 1 cut(s) | 363 |
| BstYI | RGATCY | 1 cut(s) | 363 |
| BsuRI | GGCC | 1 cut(s) | 384 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtrI | CACGTC | 1 cut(s) | 23 |
| BtsCI | GGATG | 2 cut(s) | 117, 325 |
| Cac8I | GCNNGC | 1 cut(s) | 30 |
| CfoI | GCGC | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 2 cut(s) | 166, 532 |
| Csp6I | GTAC | 1 cut(s) | 177 |
| CviAII | CATG | 4 cut(s) | 279, 359, 431, 555 |
| CviJI | RGCY | 7 cut(s) | 14, 146, 160, 311, 384, 429, 549 |
| CviKI_1 | RGCY | 7 cut(s) | 14, 146, 160, 311, 384, 429, 549 |
| CviQI | GTAC | 1 cut(s) | 177 |
| DdeI | CTNAG | 1 cut(s) | 78 |
| DpnI | GATC | 3 cut(s) | 56, 365, 410 |
| DpnII | GATC | 3 cut(s) | 54, 363, 408 |
| Eco130I | CCWWGG | 1 cut(s) | 278 |
| Eco147I | AGGCCT | 1 cut(s) | 384 |
| Eco47I | GGWCC | 2 cut(s) | 166, 532 |
| Eco57I | CTGAAG | 1 cut(s) | 518 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 81 |
| EcoO109I | RGGNCCY | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 1 cut(s) | 278 |
| ErhI | CCWWGG | 1 cut(s) | 278 |
| FaeI | CATG | 4 cut(s) | 282, 362, 434, 558 |
| FaiI | YATR | 8 cut(s) | 90, 149, 217, 280, 360, 404, 432, 556 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FatI | CATG | 4 cut(s) | 278, 358, 430, 554 |
| FbaI | TGATCA | 1 cut(s) | 54 |
| FblI | GTMKAC | 1 cut(s) | 478 |
| Fnu4HI | GCNGC | 3 cut(s) | 33, 36, 39 |
| FokI | GGATG | 2 cut(s) | 124, 332 |
| Fsp4HI | GCNGC | 3 cut(s) | 33, 36, 39 |
| GlaI | GCGC | 1 cut(s) | 27 |
| GluI | GCNGC | 3 cut(s) | 33, 36, 39 |
| HaeIII | GGCC | 1 cut(s) | 384 |
| HapII | CCGG | 2 cut(s) | 337, 535 |
| HhaI | GCGC | 1 cut(s) | 28 |
| Hin1II | CATG | 4 cut(s) | 282, 362, 434, 558 |
| Hin6I | GCGC | 1 cut(s) | 26 |
| HinP1I | GCGC | 1 cut(s) | 26 |
| HinfI | GANTC | 2 cut(s) | 68, 483 |
| HpaII | CCGG | 2 cut(s) | 337, 535 |
| HphI | GGTGA | 3 cut(s) | 382, 388, 538 |
| Hpy166II | GTNNAC | 1 cut(s) | 479 |
| Hpy188I | TCNGA | 4 cut(s) | 244, 331, 449, 488 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 121, 412, 535 |
| Hpy8I | GTNNAC | 1 cut(s) | 479 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 2 cut(s) | 22, 60 |
| HpyCH4V | TGCA | 1 cut(s) | 268 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 38 |
| HpyF3I | CTNAG | 1 cut(s) | 78 |
| HpySE526I | ACGT | 2 cut(s) | 22, 60 |
| Hsp92II | CATG | 4 cut(s) | 282, 362, 434, 558 |
| HspAI | GCGC | 1 cut(s) | 26 |
| Kpn2I | TCCGGA | 1 cut(s) | 534 |
| Ksp22I | TGATCA | 1 cut(s) | 54 |
| Kzo9I | GATC | 3 cut(s) | 54, 363, 408 |
| LmnI | GCTCC | 1 cut(s) | 355 |
| LpnPI | CCDG | 9 cut(s) | 14, 90, 157, 233, 254, 350, 352, 407, 548 |
| Lsp1109I | GCAGC | 2 cut(s) | 44, 47 |
| MaeII | ACGT | 2 cut(s) | 22, 60 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MalI | GATC | 3 cut(s) | 56, 365, 410 |
| MboI | GATC | 3 cut(s) | 54, 363, 408 |
| MboII | GAAGA | 2 cut(s) | 56, 498 |
| MflI | RGATCY | 1 cut(s) | 363 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 1 cut(s) | 427 |
| MroI | TCCGGA | 1 cut(s) | 534 |
| MseI | TTAA | 2 cut(s) | 153, 540 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MspI | CCGG | 2 cut(s) | 337, 535 |
| MspR9I | CCNGG | 1 cut(s) | 338 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 38 |
| NciI | CCSGG | 1 cut(s) | 338 |
| NcoI | CCATGG | 1 cut(s) | 278 |
| NdeII | GATC | 3 cut(s) | 54, 363, 408 |
| NlaIII | CATG | 4 cut(s) | 282, 362, 434, 558 |
| NlaIV | GGNNCC | 2 cut(s) | 167, 274 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| PceI | AGGCCT | 1 cut(s) | 384 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 453 |
| PfeI | GAWTC | 1 cut(s) | 483 |
| PfoI | TCCNGGA | 1 cut(s) | 336 |
| PkrI | GCNGC | 3 cut(s) | 34, 37, 40 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| PpuMI | RGGWCCY | 1 cut(s) | 166 |
| PshAI | GACNNNNGTC | 1 cut(s) | 443 |
| PshBI | ATTAAT | 1 cut(s) | 540 |
| Psp5II | RGGWCCY | 1 cut(s) | 166 |
| PspN4I | GGNNCC | 2 cut(s) | 167, 274 |
| PspPI | GGNCC | 2 cut(s) | 166, 532 |
| PspPPI | RGGWCCY | 1 cut(s) | 166 |
| PsuI | RGATCY | 1 cut(s) | 363 |
| RsaI | GTAC | 1 cut(s) | 178 |
| RsaNI | GTAC | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 153, 540 |
| SatI | GCNGC | 3 cut(s) | 33, 36, 39 |
| Sau3AI | GATC | 3 cut(s) | 54, 363, 408 |
| Sau96I | GGNCC | 2 cut(s) | 166, 532 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 1 cut(s) | 338 |
| SetI | ASST | 7 cut(s) | 25, 63, 88, 162, 171, 264, 329 |
| SinI | GGWCC | 2 cut(s) | 166, 532 |
| SseBI | AGGCCT | 1 cut(s) | 384 |
| SsiI | CCGC | 1 cut(s) | 38 |
| StuI | AGGCCT | 1 cut(s) | 384 |
| StyD4I | CCNGG | 1 cut(s) | 336 |
| StyI | CCWWGG | 1 cut(s) | 278 |
| TaiI | ACGT | 2 cut(s) | 25, 63 |
| TaqI | TCGA | 1 cut(s) | 520 |
| TauI | GCSGC | 1 cut(s) | 41 |
| TfiI | GAWTC | 1 cut(s) | 483 |
| Tru1I | TTAA | 2 cut(s) | 153, 540 |
| Tru9I | TTAA | 2 cut(s) | 153, 540 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 2 cut(s) | 32, 35 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 2 cut(s) | 149, 204 |
| TspGWI | ACGGA | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 2 cut(s) | 166, 532 |
| VspI | ATTAAT | 1 cut(s) | 540 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 81 |
| XmiI | GTMKAC | 1 cut(s) | 478 |