ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 363 |
| AccI | GTMKAC | 1 cut(s) | 710 |
| AccII | CGCG | 1 cut(s) | 501 |
| AciI | CCGC | 4 cut(s) | 26, 60, 303, 501 |
| AclWI | GGATC | 3 cut(s) | 24, 37, 158 |
| AcoI | YGGCCR | 1 cut(s) | 658 |
| AcsI | RAATTY | 2 cut(s) | 50, 680 |
| AcuI | CTGAAG | 2 cut(s) | 800, 1158 |
| AcvI | CACGTG | 1 cut(s) | 332 |
| AfaI | GTAC | 1 cut(s) | 211 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 416, 560, 618, 1045, 1227 |
| AflII | CTTAAG | 1 cut(s) | 932 |
| AgsI | TTSAA | 7 cut(s) | 56, 235, 284, 316, 771, 916, 1122 |
| AhlI | ACTAGT | 1 cut(s) | 752 |
| AjnI | CCWGG | 2 cut(s) | 390, 1095 |
| AluBI | AGCT | 6 cut(s) | 290, 400, 596, 645, 675, 1126 |
| AluI | AGCT | 6 cut(s) | 290, 400, 596, 645, 675, 1126 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 4 cut(s) | 139, 275, 539, 932 |
| AlwI | GGATC | 3 cut(s) | 24, 37, 158 |
| AoxI | GGCC | 3 cut(s) | 393, 451, 658 |
| ApeKI | GCWGC | 3 cut(s) | 152, 642, 672 |
| ApoI | RAATTY | 2 cut(s) | 50, 680 |
| AseI | ATTAAT | 2 cut(s) | 173, 1053 |
| AspLEI | GCGC | 1 cut(s) | 364 |
| AspS9I | GGNCC | 3 cut(s) | 377, 388, 394 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 995 |
| AvaII | GGWCC | 2 cut(s) | 377, 388 |
| BalI | TGGCCA | 1 cut(s) | 660 |
| BamHI | GGATCC | 1 cut(s) | 29 |
| BanII | GRGCYC | 1 cut(s) | 778 |
| BbrPI | CACGTG | 1 cut(s) | 332 |
| BbsI | GAAGAC | 1 cut(s) | 572 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 3 cut(s) | 164, 654, 684 |
| BccI | CCATC | 4 cut(s) | 79, 89, 780, 1153 |
| BceAI | ACGGC | 2 cut(s) | 155, 756 |
| BciT130I | CCWGG | 2 cut(s) | 392, 1097 |
| BcoDI | GTCTC | 4 cut(s) | 139, 275, 539, 932 |
| BcuI | ACTAGT | 1 cut(s) | 752 |
| BfaI | CTAG | 4 cut(s) | 63, 426, 447, 753 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BfrI | CTTAAG | 1 cut(s) | 932 |
| BisI | GCNGC | 5 cut(s) | 60, 153, 502, 643, 673 |
| BlsI | GCNGC | 5 cut(s) | 61, 154, 503, 644, 674 |
| Bme1390I | CCNGG | 2 cut(s) | 392, 1097 |
| Bme18I | GGWCC | 2 cut(s) | 377, 388 |
| BmgT120I | GGNCC | 3 cut(s) | 377, 388, 394 |
| BmiI | GGNNCC | 2 cut(s) | 31, 606 |
| BmrFI | CCNGG | 2 cut(s) | 392, 1097 |
| BmsI | GCATC | 4 cut(s) | 373, 540, 1101, 1133 |
| BpiI | GAAGAC | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 1 cut(s) | 563 |
| BsaAI | YACGTR | 1 cut(s) | 332 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1200 |
| BsaJI | CCNNGG | 3 cut(s) | 661, 815, 1006 |
| BsaWI | WCCGGW | 1 cut(s) | 127 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 929, 959 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 416, 560, 618, 1045, 1227 |
| Bse3DI | GCAATG | 1 cut(s) | 511 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1200 |
| BseBI | CCWGG | 2 cut(s) | 392, 1097 |
| BseDI | CCNNGG | 3 cut(s) | 661, 815, 1006 |
| BseGI | GGATG | 4 cut(s) | 100, 1092, 1148, 1264 |
| BseJI | GATNNNNATC | 1 cut(s) | 1200 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 416, 560, 618, 1045, 1227 |
| BseMI | GCAATG | 1 cut(s) | 511 |
| BseMII | CTCAG | 2 cut(s) | 119, 1182 |
| BseRI | GAGGAG | 3 cut(s) | 95, 446, 854 |
| BseXI | GCAGC | 3 cut(s) | 164, 654, 684 |
| BseYI | CCCAGC | 2 cut(s) | 396, 695 |
| BsgI | GTGCAG | 1 cut(s) | 661 |
| Bsh1236I | CGCG | 1 cut(s) | 501 |
| BshFI | GGCC | 3 cut(s) | 395, 453, 660 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 2 cut(s) | 128, 524 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 416, 560, 618, 1045, 1227 |
| BsmAI | GTCTC | 4 cut(s) | 139, 275, 539, 932 |
| BsmBI | CGTCTC | 1 cut(s) | 539 |
| BsmI | GAATGC | 2 cut(s) | 181, 1103 |
| BsnI | GGCC | 3 cut(s) | 395, 453, 660 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 778 |
| Bsp143I | GATC | 4 cut(s) | 29, 163, 686, 985 |
| Bsp19I | CCATGG | 2 cut(s) | 661, 1006 |
| BspACI | CCGC | 4 cut(s) | 26, 60, 303, 501 |
| BspANI | GGCC | 3 cut(s) | 395, 453, 660 |
| BspCNI | CTCAG | 2 cut(s) | 118, 1183 |
| BspFNI | CGCG | 1 cut(s) | 501 |
| BspLI | GGNNCC | 2 cut(s) | 31, 606 |
| BspMAI | CTGCAG | 1 cut(s) | 418 |
| BspPI | GGATC | 3 cut(s) | 24, 37, 158 |
| BspTI | CTTAAG | 1 cut(s) | 932 |
| BsrDI | GCAATG | 1 cut(s) | 511 |
| BssECI | CCNNGG | 3 cut(s) | 661, 815, 1006 |
| BssMI | GATC | 4 cut(s) | 29, 163, 686, 985 |
| BssT1I | CCWWGG | 3 cut(s) | 661, 815, 1006 |
| Bst2UI | CCWGG | 2 cut(s) | 392, 1097 |
| Bst4CI | ACNGT | 2 cut(s) | 639, 1040 |
| Bst6I | CTCTTC | 1 cut(s) | 884 |
| BstAFI | CTTAAG | 1 cut(s) | 932 |
| BstBAI | YACGTR | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 1 cut(s) | 609 |
| BstDEI | CTNAG | 2 cut(s) | 105, 1191 |
| BstDSI | CCRYGG | 2 cut(s) | 661, 1006 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1225 |
| BstF5I | GGATG | 4 cut(s) | 100, 1092, 1148, 1264 |
| BstFNI | CGCG | 1 cut(s) | 501 |
| BstHHI | GCGC | 1 cut(s) | 364 |
| BstKTI | GATC | 4 cut(s) | 32, 166, 689, 988 |
| BstMAI | GTCTC | 4 cut(s) | 139, 275, 539, 932 |
| BstMBI | GATC | 4 cut(s) | 29, 163, 686, 985 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 158 |
| BstNI | CCWGG | 2 cut(s) | 392, 1097 |
| BstSCI | CCNGG | 2 cut(s) | 390, 1095 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstUI | CGCG | 1 cut(s) | 501 |
| BstV1I | GCAGC | 3 cut(s) | 164, 654, 684 |
| BstV2I | GAAGAC | 1 cut(s) | 572 |
| BstX2I | RGATCY | 2 cut(s) | 29, 163 |
| BstYI | RGATCY | 2 cut(s) | 29, 163 |
| BsuRI | GGCC | 3 cut(s) | 395, 453, 660 |
| BtgI | CCRYGG | 2 cut(s) | 661, 1006 |
| BtgZI | GCGATG | 2 cut(s) | 527, 799 |
| BtsCI | GGATG | 4 cut(s) | 100, 1092, 1148, 1264 |
| Cac8I | GCNNGC | 1 cut(s) | 609 |
| CfoI | GCGC | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 3 cut(s) | 377, 388, 394 |
| Csp6I | GTAC | 1 cut(s) | 210 |
| CviAII | CATG | 5 cut(s) | 186, 374, 662, 969, 1007 |
| CviQI | GTAC | 1 cut(s) | 210 |
| DdeI | CTNAG | 2 cut(s) | 105, 1191 |
| DpnI | GATC | 4 cut(s) | 31, 165, 688, 987 |
| DpnII | GATC | 4 cut(s) | 29, 163, 686, 985 |
| EaeI | YGGCCR | 1 cut(s) | 658 |
| Eam1104I | CTCTTC | 1 cut(s) | 884 |
| EarI | CTCTTC | 1 cut(s) | 884 |
| Eco130I | CCWWGG | 3 cut(s) | 661, 815, 1006 |
| Eco24I | GRGCYC | 1 cut(s) | 778 |
| Eco47I | GGWCC | 2 cut(s) | 377, 388 |
| Eco57I | CTGAAG | 2 cut(s) | 800, 1158 |
| Eco72I | CACGTG | 1 cut(s) | 332 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1225 |
| EcoRII | CCWGG | 2 cut(s) | 390, 1095 |
| EcoT14I | CCWWGG | 3 cut(s) | 661, 815, 1006 |
| EcoT38I | GRGCYC | 1 cut(s) | 778 |
| ErhI | CCWWGG | 3 cut(s) | 661, 815, 1006 |
| Esp3I | CGTCTC | 1 cut(s) | 539 |
| FaeI | CATG | 5 cut(s) | 189, 377, 665, 972, 1010 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 841, 873 |
| FatI | CATG | 5 cut(s) | 185, 373, 661, 968, 1006 |
| FauI | CCCGC | 2 cut(s) | 19, 296 |
| FauNDI | CATATG | 1 cut(s) | 1152 |
| FblI | GTMKAC | 1 cut(s) | 710 |
| Fnu4HI | GCNGC | 5 cut(s) | 60, 153, 502, 643, 673 |
| FokI | GGATG | 3 cut(s) | 107, 1079, 1155 |
| FriOI | GRGCYC | 1 cut(s) | 778 |
| Fsp4HI | GCNGC | 5 cut(s) | 60, 153, 502, 643, 673 |
| FspAI | RTGCGCAY | 1 cut(s) | 363 |
| FspBI | CTAG | 4 cut(s) | 63, 426, 447, 753 |
| FspI | TGCGCA | 1 cut(s) | 363 |
| GlaI | GCGC | 1 cut(s) | 363 |
| GluI | GCNGC | 5 cut(s) | 60, 153, 502, 643, 673 |
| GsaI | CCCAGC | 2 cut(s) | 400, 699 |
| HaeIII | GGCC | 3 cut(s) | 395, 453, 660 |
| HapII | CCGG | 2 cut(s) | 128, 524 |
| HhaI | GCGC | 1 cut(s) | 364 |
| Hin1II | CATG | 5 cut(s) | 189, 377, 665, 972, 1010 |
| Hin6I | GCGC | 1 cut(s) | 362 |
| HinP1I | GCGC | 1 cut(s) | 362 |
| HinfI | GANTC | 5 cut(s) | 197, 280, 1079, 1174, 1201 |
| HpaII | CCGG | 2 cut(s) | 128, 524 |
| HphI | GGTGA | 2 cut(s) | 110, 995 |
| Hpy166II | GTNNAC | 3 cut(s) | 631, 711, 1131 |
| Hpy188I | TCNGA | 8 cut(s) | 118, 604, 724, 780, 1063, 1084, 1138, 1206 |
| Hpy188III | TCNNGA | 3 cut(s) | 42, 542, 748 |
| Hpy8I | GTNNAC | 3 cut(s) | 631, 711, 1131 |
| Hpy99I | CGWCG | 1 cut(s) | 141 |
| HpyAV | CCTTC | 6 cut(s) | 301, 521, 889, 974, 1023, 1133 |
| HpyCH4III | ACNGT | 2 cut(s) | 639, 1040 |
| HpyCH4IV | ACGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 9 cut(s) | 152, 181, 229, 340, 416, 642, 883, 1016, 1146 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 158 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 1191 |
| HpySE526I | ACGT | 1 cut(s) | 331 |
| Hsp92II | CATG | 5 cut(s) | 189, 377, 665, 972, 1010 |
| HspAI | GCGC | 1 cut(s) | 362 |
| Kzo9I | GATC | 4 cut(s) | 29, 163, 686, 985 |
| LmnI | GCTCC | 3 cut(s) | 287, 604, 680 |
| Lsp1109I | GCAGC | 3 cut(s) | 164, 654, 684 |
| LweI | GCATC | 4 cut(s) | 373, 540, 1101, 1133 |
| MaeI | CTAG | 4 cut(s) | 63, 426, 447, 753 |
| MaeII | ACGT | 1 cut(s) | 331 |
| MaeIII | GTNAC | 2 cut(s) | 39, 1186 |
| MalI | GATC | 4 cut(s) | 31, 165, 688, 987 |
| MboI | GATC | 4 cut(s) | 29, 163, 686, 985 |
| MboII | GAAGA | 5 cut(s) | 577, 681, 832, 901, 1045 |
| MfeI | CAATTG | 1 cut(s) | 230 |
| MflI | RGATCY | 2 cut(s) | 29, 163 |
| MhlI | GDGCHC | 2 cut(s) | 348, 778 |
| MlsI | TGGCCA | 1 cut(s) | 660 |
| MluCI | AATT | 8 cut(s) | 50, 170, 174, 230, 311, 680, 865, 1057 |
| MluNI | TGGCCA | 1 cut(s) | 660 |
| MlyI | GAGTC | 1 cut(s) | 1088 |
| MmeI | TCCRAC | 2 cut(s) | 334, 582 |
| Mox20I | TGGCCA | 1 cut(s) | 660 |
| MscI | TGGCCA | 1 cut(s) | 660 |
| MseI | TTAA | 5 cut(s) | 173, 737, 762, 933, 1053 |
| MslI | CAYNNNNRTG | 1 cut(s) | 190 |
| Msp20I | TGGCCA | 1 cut(s) | 660 |
| MspCI | CTTAAG | 1 cut(s) | 932 |
| MspI | CCGG | 2 cut(s) | 128, 524 |
| MspR9I | CCNGG | 2 cut(s) | 392, 1097 |
| MunI | CAATTG | 1 cut(s) | 230 |
| Mva1269I | GAATGC | 2 cut(s) | 181, 1103 |
| MvaI | CCWGG | 2 cut(s) | 392, 1097 |
| MvnI | CGCG | 1 cut(s) | 501 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 158 |
| NcoI | CCATGG | 2 cut(s) | 661, 1006 |
| NdeI | CATATG | 1 cut(s) | 1152 |
| NdeII | GATC | 4 cut(s) | 29, 163, 686, 985 |
| NlaIII | CATG | 5 cut(s) | 189, 377, 665, 972, 1010 |
| NlaIV | GGNNCC | 2 cut(s) | 31, 606 |
| NmuCI | GTSAC | 1 cut(s) | 39 |
| NsbI | TGCGCA | 1 cut(s) | 363 |
| PctI | GAATGC | 2 cut(s) | 181, 1103 |
| PfeI | GAWTC | 4 cut(s) | 197, 280, 1174, 1201 |
| PfoI | TCCNGGA | 1 cut(s) | 1095 |
| PkrI | GCNGC | 5 cut(s) | 61, 154, 503, 644, 674 |
| PleI | GAGTC | 1 cut(s) | 1087 |
| PmaCI | CACGTG | 1 cut(s) | 332 |
| PmlI | CACGTG | 1 cut(s) | 332 |
| PpsI | GAGTC | 1 cut(s) | 1087 |
| Ppu21I | YACGTR | 1 cut(s) | 332 |
| PshBI | ATTAAT | 2 cut(s) | 173, 1053 |
| Psp6I | CCWGG | 2 cut(s) | 390, 1095 |
| PspCI | CACGTG | 1 cut(s) | 332 |
| PspFI | CCCAGC | 2 cut(s) | 396, 695 |
| PspGI | CCWGG | 2 cut(s) | 390, 1095 |
| PspN4I | GGNNCC | 2 cut(s) | 31, 606 |
| PspPI | GGNCC | 3 cut(s) | 377, 388, 394 |
| PstI | CTGCAG | 1 cut(s) | 418 |
| PsuI | RGATCY | 2 cut(s) | 29, 163 |
| RsaI | GTAC | 1 cut(s) | 211 |
| RsaNI | GTAC | 1 cut(s) | 210 |
| RseI | CAYNNNNRTG | 1 cut(s) | 190 |
| SaqAI | TTAA | 5 cut(s) | 173, 737, 762, 933, 1053 |
| SatI | GCNGC | 5 cut(s) | 60, 153, 502, 643, 673 |
| Sau3AI | GATC | 4 cut(s) | 29, 163, 686, 985 |
| Sau96I | GGNCC | 3 cut(s) | 377, 388, 394 |
| SchI | GAGTC | 1 cut(s) | 1088 |
| ScrFI | CCNGG | 2 cut(s) | 392, 1097 |
| SduI | GDGCHC | 2 cut(s) | 348, 778 |
| SfaNI | GCATC | 4 cut(s) | 373, 540, 1101, 1133 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| SinI | GGWCC | 2 cut(s) | 377, 388 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 190 |
| SmlI | CTYRAG | 2 cut(s) | 542, 932 |
| SmoI | CTYRAG | 2 cut(s) | 542, 932 |
| SpeI | ACTAGT | 1 cut(s) | 752 |
| Sse9I | AATT | 8 cut(s) | 50, 170, 174, 230, 311, 680, 865, 1057 |
| SsiI | CCGC | 4 cut(s) | 26, 60, 303, 501 |
| SspMI | CTAG | 4 cut(s) | 63, 426, 447, 753 |
| StyD4I | CCNGG | 2 cut(s) | 390, 1095 |
| StyI | CCWWGG | 3 cut(s) | 661, 815, 1006 |
| TaaI | ACNGT | 2 cut(s) | 639, 1040 |
| TaiI | ACGT | 1 cut(s) | 334 |
| TaqI | TCGA | 2 cut(s) | 572, 685 |
| TaqII | GACCGA | 3 cut(s) | 27, 376, 794 |
| TasI | AATT | 8 cut(s) | 50, 170, 174, 230, 311, 680, 865, 1057 |
| TatI | WGTACW | 1 cut(s) | 209 |
| TauI | GCSGC | 2 cut(s) | 62, 504 |
| TfiI | GAWTC | 4 cut(s) | 197, 280, 1174, 1201 |
| Tru1I | TTAA | 5 cut(s) | 173, 737, 762, 933, 1053 |
| Tru9I | TTAA | 5 cut(s) | 173, 737, 762, 933, 1053 |
| TseFI | GTSAC | 1 cut(s) | 39 |
| TseI | GCWGC | 3 cut(s) | 152, 642, 672 |
| Tsp45I | GTSAC | 1 cut(s) | 39 |
| TspDTI | ATGAA | 4 cut(s) | 33, 174, 957, 1214 |
| Vha464I | CTTAAG | 1 cut(s) | 932 |
| VpaK11BI | GGWCC | 2 cut(s) | 377, 388 |
| VspI | ATTAAT | 2 cut(s) | 173, 1053 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1225 |
| XapI | RAATTY | 2 cut(s) | 50, 680 |
| XmiI | GTMKAC | 1 cut(s) | 710 |
| XspI | CTAG | 4 cut(s) | 63, 426, 447, 753 |