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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 396, 689 |
| AclWI | GGATC | 2 cut(s) | 272, 329 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 1 cut(s) | 451 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 202, 218 |
| AflII | CTTAAG | 3 cut(s) | 161, 268, 464 |
| AgsI | TTSAA | 3 cut(s) | 236, 606, 651 |
| AhlI | ACTAGT | 1 cut(s) | 695 |
| AjnI | CCWGG | 2 cut(s) | 48, 70 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 29, 67, 99 |
| AluBI | AGCT | 3 cut(s) | 132, 251, 463 |
| AluI | AGCT | 3 cut(s) | 132, 251, 463 |
| Alw21I | GWGCWC | 1 cut(s) | 134 |
| Alw26I | GTCTC | 1 cut(s) | 244 |
| AlwI | GGATC | 2 cut(s) | 272, 329 |
| Ama87I | CYCGRG | 1 cut(s) | 127 |
| AoxI | GGCC | 5 cut(s) | 193, 524, 539, 629, 709 |
| ApeKI | GCWGC | 1 cut(s) | 157 |
| AseI | ATTAAT | 1 cut(s) | 609 |
| AspA2I | CCTAGG | 1 cut(s) | 445 |
| AspS9I | GGNCC | 8 cut(s) | 119, 124, 209, 524, 540, 560, 629, 709 |
| AsuC2I | CCSGG | 4 cut(s) | 172, 213, 352, 670 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 227 |
| AsuNHI | GCTAGC | 1 cut(s) | 431 |
| AvaI | CYCGRG | 1 cut(s) | 127 |
| AvaII | GGWCC | 4 cut(s) | 119, 124, 209, 560 |
| AvrII | CCTAGG | 1 cut(s) | 445 |
| BanII | GRGCYC | 1 cut(s) | 134 |
| BbsI | GAAGAC | 2 cut(s) | 12, 639 |
| Bbv12I | GWGCWC | 1 cut(s) | 134 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 2 cut(s) | 149, 398 |
| BceAI | ACGGC | 1 cut(s) | 235 |
| BciT130I | CCWGG | 2 cut(s) | 50, 72 |
| BciVI | GTATCC | 1 cut(s) | 685 |
| BcnI | CCSGG | 4 cut(s) | 172, 213, 352, 670 |
| BcoDI | GTCTC | 1 cut(s) | 244 |
| BcuI | ACTAGT | 1 cut(s) | 695 |
| BfaI | CTAG | 6 cut(s) | 93, 102, 339, 432, 446, 696 |
| BfmI | CTRYAG | 1 cut(s) | 145 |
| BfrI | CTTAAG | 3 cut(s) | 161, 268, 464 |
| BfuI | GTATCC | 1 cut(s) | 685 |
| BisI | GCNGC | 2 cut(s) | 158, 397 |
| BlnI | CCTAGG | 1 cut(s) | 445 |
| BlsI | GCNGC | 2 cut(s) | 159, 398 |
| Bme1390I | CCNGG | 6 cut(s) | 50, 72, 172, 213, 352, 670 |
| Bme18I | GGWCC | 4 cut(s) | 119, 124, 209, 560 |
| BmeT110I | CYCGRG | 1 cut(s) | 127 |
| BmgT120I | GGNCC | 8 cut(s) | 119, 124, 209, 524, 540, 560, 629, 709 |
| BmiI | GGNNCC | 3 cut(s) | 126, 561, 710 |
| BmrFI | CCNGG | 6 cut(s) | 50, 72, 172, 213, 352, 670 |
| BmsI | GCATC | 4 cut(s) | 307, 337, 589, 628 |
| BmtI | GCTAGC | 1 cut(s) | 435 |
| BpiI | GAAGAC | 2 cut(s) | 12, 639 |
| BpuMI | CCSGG | 4 cut(s) | 172, 213, 352, 670 |
| BsaJI | CCNNGG | 5 cut(s) | 70, 281, 351, 445, 527 |
| BsaWI | WCCGGW | 1 cut(s) | 121 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 202, 218 |
| BseBI | CCWGG | 2 cut(s) | 50, 72 |
| BseDI | CCNNGG | 5 cut(s) | 70, 281, 351, 445, 527 |
| BseGI | GGATG | 2 cut(s) | 66, 604 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 202, 218 |
| BseRI | GAGGAG | 2 cut(s) | 165, 232 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BseYI | CCCAGC | 1 cut(s) | 677 |
| BshFI | GGCC | 5 cut(s) | 195, 526, 541, 631, 711 |
| BsiHKAI | GWGCWC | 1 cut(s) | 134 |
| BsiHKCI | CYCGRG | 1 cut(s) | 127 |
| BsiSI | CCGG | 5 cut(s) | 122, 171, 212, 351, 669 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 202, 218 |
| BsmAI | GTCTC | 1 cut(s) | 244 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsnI | GGCC | 5 cut(s) | 195, 526, 541, 631, 711 |
| BsoBI | CYCGRG | 1 cut(s) | 127 |
| Bsp1286I | GDGCHC | 1 cut(s) | 134 |
| Bsp143I | GATC | 2 cut(s) | 264, 334 |
| BspACI | CCGC | 2 cut(s) | 396, 689 |
| BspANI | GGCC | 5 cut(s) | 195, 526, 541, 631, 711 |
| BspLI | GGNNCC | 3 cut(s) | 126, 561, 710 |
| BspMAI | CTGCAG | 1 cut(s) | 149 |
| BspOI | GCTAGC | 1 cut(s) | 435 |
| BspPI | GGATC | 2 cut(s) | 272, 329 |
| BspTI | CTTAAG | 3 cut(s) | 161, 268, 464 |
| BssECI | CCNNGG | 5 cut(s) | 70, 281, 351, 445, 527 |
| BssMI | GATC | 2 cut(s) | 264, 334 |
| BssT1I | CCWWGG | 2 cut(s) | 281, 445 |
| Bst2UI | CCWGG | 2 cut(s) | 50, 72 |
| Bst4CI | ACNGT | 1 cut(s) | 506 |
| BstAFI | CTTAAG | 3 cut(s) | 161, 268, 464 |
| BstC8I | GCNNGC | 1 cut(s) | 433 |
| BstDEI | CTNAG | 2 cut(s) | 10, 570 |
| BstF5I | GGATG | 2 cut(s) | 66, 604 |
| BstKTI | GATC | 2 cut(s) | 267, 337 |
| BstMAI | GTCTC | 1 cut(s) | 244 |
| BstMBI | GATC | 2 cut(s) | 264, 334 |
| BstNI | CCWGG | 2 cut(s) | 50, 72 |
| BstSCI | CCNGG | 6 cut(s) | 48, 70, 170, 211, 350, 668 |
| BstSFI | CTRYAG | 1 cut(s) | 145 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 639 |
| BstX2I | RGATCY | 1 cut(s) | 264 |
| BstYI | RGATCY | 1 cut(s) | 264 |
| BsuI | GTATCC | 1 cut(s) | 685 |
| BsuRI | GGCC | 5 cut(s) | 195, 526, 541, 631, 711 |
| BtsCI | GGATG | 2 cut(s) | 66, 604 |
| Cac8I | GCNNGC | 1 cut(s) | 433 |
| Cfr13I | GGNCC | 8 cut(s) | 119, 124, 209, 524, 540, 560, 629, 709 |
| Csp6I | GTAC | 1 cut(s) | 450 |
| CviAII | CATG | 1 cut(s) | 438 |
| CviQI | GTAC | 1 cut(s) | 450 |
| DdeI | CTNAG | 2 cut(s) | 10, 570 |
| DpnI | GATC | 2 cut(s) | 266, 336 |
| DpnII | GATC | 2 cut(s) | 264, 334 |
| EciI | GGCGGA | 1 cut(s) | 704 |
| Ecl136II | GAGCTC | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 2 cut(s) | 281, 445 |
| Eco24I | GRGCYC | 1 cut(s) | 134 |
| Eco32I | GATATC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 4 cut(s) | 119, 124, 209, 560 |
| Eco53kI | GAGCTC | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco88I | CYCGRG | 1 cut(s) | 127 |
| EcoICRI | GAGCTC | 1 cut(s) | 132 |
| EcoRII | CCWGG | 2 cut(s) | 48, 70 |
| EcoRV | GATATC | 1 cut(s) | 168 |
| EcoT14I | CCWWGG | 2 cut(s) | 281, 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 134 |
| ErhI | CCWWGG | 2 cut(s) | 281, 445 |
| FaeI | CATG | 1 cut(s) | 441 |
| FaiI | YATR | 1 cut(s) | 439 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 471, 503 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FatI | CATG | 1 cut(s) | 437 |
| Fnu4HI | GCNGC | 2 cut(s) | 158, 397 |
| FokI | GGATG | 2 cut(s) | 53, 611 |
| FriOI | GRGCYC | 1 cut(s) | 134 |
| Fsp4HI | GCNGC | 2 cut(s) | 158, 397 |
| FspBI | CTAG | 6 cut(s) | 93, 102, 339, 432, 446, 696 |
| GluI | GCNGC | 2 cut(s) | 158, 397 |
| GsaI | CCCAGC | 1 cut(s) | 681 |
| HaeIII | GGCC | 5 cut(s) | 195, 526, 541, 631, 711 |
| HapII | CCGG | 5 cut(s) | 122, 171, 212, 351, 669 |
| Hin1II | CATG | 1 cut(s) | 441 |
| HindIII | AAGCTT | 1 cut(s) | 461 |
| HinfI | GANTC | 2 cut(s) | 75, 658 |
| HpaII | CCGG | 5 cut(s) | 122, 171, 212, 351, 669 |
| HphI | GGTGA | 2 cut(s) | 28, 227 |
| Hpy188I | TCNGA | 1 cut(s) | 247 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 262, 386, 492 |
| HpyAV | CCTTC | 6 cut(s) | 178, 206, 321, 568, 572, 586 |
| HpyCH4III | ACNGT | 1 cut(s) | 506 |
| HpyCH4V | TGCA | 3 cut(s) | 26, 147, 619 |
| HpyF3I | CTNAG | 2 cut(s) | 10, 570 |
| Hsp92II | CATG | 1 cut(s) | 441 |
| Kzo9I | GATC | 2 cut(s) | 264, 334 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| LweI | GCATC | 4 cut(s) | 307, 337, 589, 628 |
| MaeI | CTAG | 6 cut(s) | 93, 102, 339, 432, 446, 696 |
| MaeIII | GTNAC | 3 cut(s) | 215, 440, 698 |
| MalI | GATC | 2 cut(s) | 266, 336 |
| MboI | GATC | 2 cut(s) | 264, 334 |
| MboII | GAAGA | 4 cut(s) | 17, 356, 601, 639 |
| MfeI | CAATTG | 1 cut(s) | 107 |
| MflI | RGATCY | 1 cut(s) | 264 |
| MhlI | GDGCHC | 1 cut(s) | 134 |
| MluCI | AATT | 2 cut(s) | 107, 606 |
| MmeI | TCCRAC | 1 cut(s) | 456 |
| MnlI | CCTC | 9 cut(s) | 44, 143, 146, 253, 388, 464, 488, 537, 666 |
| MseI | TTAA | 4 cut(s) | 162, 269, 465, 609 |
| MspCI | CTTAAG | 3 cut(s) | 161, 268, 464 |
| MspI | CCGG | 5 cut(s) | 122, 171, 212, 351, 669 |
| MspR9I | CCNGG | 6 cut(s) | 50, 72, 172, 213, 352, 670 |
| MunI | CAATTG | 1 cut(s) | 107 |
| MvaI | CCWGG | 2 cut(s) | 50, 72 |
| NciI | CCSGG | 4 cut(s) | 172, 213, 352, 670 |
| NdeII | GATC | 2 cut(s) | 264, 334 |
| NheI | GCTAGC | 1 cut(s) | 431 |
| NlaIII | CATG | 1 cut(s) | 441 |
| NlaIV | GGNNCC | 3 cut(s) | 126, 561, 710 |
| NmuCI | GTSAC | 3 cut(s) | 215, 440, 698 |
| PfeI | GAWTC | 2 cut(s) | 75, 658 |
| PfoI | TCCNGGA | 2 cut(s) | 170, 668 |
| PkrI | GCNGC | 2 cut(s) | 159, 398 |
| PshBI | ATTAAT | 1 cut(s) | 609 |
| Psp124BI | GAGCTC | 1 cut(s) | 134 |
| Psp6I | CCWGG | 2 cut(s) | 48, 70 |
| PspFI | CCCAGC | 1 cut(s) | 677 |
| PspGI | CCWGG | 2 cut(s) | 48, 70 |
| PspN4I | GGNNCC | 3 cut(s) | 126, 561, 710 |
| PspPI | GGNCC | 8 cut(s) | 119, 124, 209, 524, 540, 560, 629, 709 |
| PstI | CTGCAG | 1 cut(s) | 149 |
| PsuI | RGATCY | 1 cut(s) | 264 |
| RsaI | GTAC | 1 cut(s) | 451 |
| RsaNI | GTAC | 1 cut(s) | 450 |
| SacI | GAGCTC | 1 cut(s) | 134 |
| SaqAI | TTAA | 4 cut(s) | 162, 269, 465, 609 |
| SatI | GCNGC | 2 cut(s) | 158, 397 |
| Sau3AI | GATC | 2 cut(s) | 264, 334 |
| Sau96I | GGNCC | 8 cut(s) | 119, 124, 209, 524, 540, 560, 629, 709 |
| ScrFI | CCNGG | 6 cut(s) | 50, 72, 172, 213, 352, 670 |
| SduI | GDGCHC | 1 cut(s) | 134 |
| SetI | ASST | 7 cut(s) | 36, 134, 253, 447, 451, 465, 522 |
| SfaNI | GCATC | 4 cut(s) | 307, 337, 589, 628 |
| SfcI | CTRYAG | 1 cut(s) | 145 |
| SinI | GGWCC | 4 cut(s) | 119, 124, 209, 560 |
| SmlI | CTYRAG | 3 cut(s) | 161, 268, 464 |
| SmoI | CTYRAG | 3 cut(s) | 161, 268, 464 |
| SpeI | ACTAGT | 1 cut(s) | 695 |
| Sse9I | AATT | 2 cut(s) | 107, 606 |
| SsiI | CCGC | 2 cut(s) | 396, 689 |
| SspMI | CTAG | 6 cut(s) | 93, 102, 339, 432, 446, 696 |
| SstI | GAGCTC | 1 cut(s) | 134 |
| StyD4I | CCNGG | 6 cut(s) | 48, 70, 170, 211, 350, 668 |
| StyI | CCWWGG | 2 cut(s) | 281, 445 |
| TaaI | ACNGT | 1 cut(s) | 506 |
| TaqI | TCGA | 5 cut(s) | 45, 199, 387, 548, 587 |
| TaqII | GACCGA | 1 cut(s) | 519 |
| TasI | AATT | 2 cut(s) | 107, 606 |
| TauI | GCSGC | 1 cut(s) | 399 |
| TfiI | GAWTC | 2 cut(s) | 75, 658 |
| Tru1I | TTAA | 4 cut(s) | 162, 269, 465, 609 |
| Tru9I | TTAA | 4 cut(s) | 162, 269, 465, 609 |
| TseFI | GTSAC | 3 cut(s) | 215, 440, 698 |
| TseI | GCWGC | 1 cut(s) | 157 |
| Tsp45I | GTSAC | 3 cut(s) | 215, 440, 698 |
| TspDTI | ATGAA | 1 cut(s) | 55 |
| Vha464I | CTTAAG | 3 cut(s) | 161, 268, 464 |
| VpaK11BI | GGWCC | 4 cut(s) | 119, 124, 209, 560 |
| VspI | ATTAAT | 1 cut(s) | 609 |
| XmaJI | CCTAGG | 1 cut(s) | 445 |
| XspI | CTAG | 6 cut(s) | 93, 102, 339, 432, 446, 696 |