ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 804 |
| Acc65I | GGTACC | 1 cut(s) | 433 |
| AccB1I | GGYRCC | 2 cut(s) | 433, 694 |
| AccI | GTMKAC | 1 cut(s) | 763 |
| AciI | CCGC | 2 cut(s) | 893, 975 |
| AclWI | GGATC | 5 cut(s) | 416, 429, 521, 1032, 1045 |
| AcoI | YGGCCR | 1 cut(s) | 529 |
| AcsI | RAATTY | 2 cut(s) | 465, 856 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AcyI | GRCGYC | 2 cut(s) | 613, 801 |
| AfaI | GTAC | 2 cut(s) | 357, 435 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 677, 713, 1034 |
| AgsI | TTSAA | 4 cut(s) | 47, 328, 929, 1076 |
| AjnI | CCWGG | 3 cut(s) | 174, 676, 728 |
| Alw26I | GTCTC | 6 cut(s) | 409, 419, 502, 578, 764, 808 |
| AlwI | GGATC | 5 cut(s) | 416, 429, 521, 1032, 1045 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 992 |
| AoxI | GGCC | 3 cut(s) | 259, 529, 549 |
| ApeKI | GCWGC | 1 cut(s) | 572 |
| ApoI | RAATTY | 2 cut(s) | 465, 856 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 449 |
| Asp718I | GGTACC | 1 cut(s) | 433 |
| AspS9I | GGNCC | 3 cut(s) | 260, 289, 372 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 865 |
| AvaII | GGWCC | 2 cut(s) | 289, 372 |
| BalI | TGGCCA | 1 cut(s) | 531 |
| BamHI | GGATCC | 2 cut(s) | 421, 1037 |
| BanI | GGYRCC | 2 cut(s) | 433, 694 |
| BbsI | GAAGAC | 3 cut(s) | 345, 608, 1064 |
| BbvI | GCAGC | 1 cut(s) | 584 |
| BccI | CCATC | 4 cut(s) | 115, 404, 490, 773 |
| BceAI | ACGGC | 1 cut(s) | 857 |
| BciT130I | CCWGG | 3 cut(s) | 176, 678, 730 |
| BcoDI | GTCTC | 6 cut(s) | 409, 419, 502, 578, 764, 808 |
| BfaI | CTAG | 2 cut(s) | 504, 767 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 841 |
| BglII | AGATCT | 1 cut(s) | 214 |
| BisI | GCNGC | 2 cut(s) | 573, 894 |
| BlsI | GCNGC | 2 cut(s) | 574, 895 |
| Bme1390I | CCNGG | 3 cut(s) | 176, 678, 730 |
| Bme18I | GGWCC | 2 cut(s) | 289, 372 |
| BmgT120I | GGNCC | 3 cut(s) | 260, 289, 372 |
| BmiI | GGNNCC | 4 cut(s) | 423, 435, 696, 1039 |
| BmrFI | CCNGG | 3 cut(s) | 176, 678, 730 |
| BmrI | ACTGGG | 1 cut(s) | 358 |
| BmsI | GCATC | 2 cut(s) | 547, 808 |
| BmuI | ACTGGG | 1 cut(s) | 358 |
| BpiI | GAAGAC | 3 cut(s) | 345, 608, 1064 |
| BpuEI | CTTGAG | 1 cut(s) | 425 |
| BsaAI | YACGTR | 1 cut(s) | 359 |
| BsaHI | GRCGYC | 2 cut(s) | 613, 801 |
| BsaI | GGTCTC | 2 cut(s) | 409, 419 |
| BsaJI | CCNNGG | 3 cut(s) | 368, 729, 1041 |
| BsaWI | WCCGGW | 1 cut(s) | 165 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 677, 713, 1034 |
| Bse1I | ACTGG | 3 cut(s) | 161, 353, 887 |
| BseBI | CCWGG | 3 cut(s) | 176, 678, 730 |
| BseDI | CCNNGG | 3 cut(s) | 368, 729, 1041 |
| BseGI | GGATG | 3 cut(s) | 499, 784, 919 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 677, 713, 1034 |
| BseNI | ACTGG | 3 cut(s) | 161, 353, 887 |
| BseXI | GCAGC | 1 cut(s) | 584 |
| BshFI | GGCC | 3 cut(s) | 261, 531, 551 |
| BshNI | GGYRCC | 2 cut(s) | 433, 694 |
| BsiSI | CCGG | 3 cut(s) | 140, 166, 698 |
| BslFI | GGGAC | 2 cut(s) | 764, 812 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 677, 713, 1034 |
| BsmAI | GTCTC | 6 cut(s) | 409, 419, 502, 578, 764, 808 |
| BsmBI | CGTCTC | 2 cut(s) | 502, 808 |
| BsmFI | GGGAC | 2 cut(s) | 764, 812 |
| BsnI | GGCC | 3 cut(s) | 261, 531, 551 |
| Bso31I | GGTCTC | 2 cut(s) | 409, 419 |
| Bsp143I | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| Bsp19I | CCATGG | 1 cut(s) | 368 |
| BspACI | CCGC | 2 cut(s) | 893, 975 |
| BspANI | GGCC | 3 cut(s) | 261, 531, 551 |
| BspLI | GGNNCC | 4 cut(s) | 423, 435, 696, 1039 |
| BspPI | GGATC | 5 cut(s) | 416, 429, 521, 1032, 1045 |
| BspQI | GCTCTTC | 1 cut(s) | 567 |
| BspT107I | GGYRCC | 2 cut(s) | 433, 694 |
| BspTNI | GGTCTC | 2 cut(s) | 409, 419 |
| BsrI | ACTGG | 3 cut(s) | 161, 353, 887 |
| BssECI | CCNNGG | 3 cut(s) | 368, 729, 1041 |
| BssMI | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| BssNI | GRCGYC | 2 cut(s) | 613, 801 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst2UI | CCWGG | 3 cut(s) | 176, 678, 730 |
| Bst4CI | ACNGT | 5 cut(s) | 83, 96, 660, 908, 998 |
| Bst6I | CTCTTC | 3 cut(s) | 147, 323, 567 |
| BstACI | GRCGYC | 2 cut(s) | 613, 801 |
| BstBAI | YACGTR | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 2 cut(s) | 594, 715 |
| BstDEI | CTNAG | 1 cut(s) | 688 |
| BstDSI | CCRYGG | 1 cut(s) | 368 |
| BstF5I | GGATG | 3 cut(s) | 499, 784, 919 |
| BstKTI | GATC | 6 cut(s) | 135, 217, 424, 516, 982, 1040 |
| BstMAI | GTCTC | 6 cut(s) | 409, 419, 502, 578, 764, 808 |
| BstMBI | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 557, 841, 974, 983 |
| BstNI | CCWGG | 3 cut(s) | 176, 678, 730 |
| BstSCI | CCNGG | 3 cut(s) | 174, 676, 728 |
| BstV1I | GCAGC | 1 cut(s) | 584 |
| BstV2I | GAAGAC | 3 cut(s) | 345, 608, 1064 |
| BstX2I | RGATCY | 3 cut(s) | 214, 421, 1037 |
| BstYI | RGATCY | 3 cut(s) | 214, 421, 1037 |
| BsuRI | GGCC | 3 cut(s) | 261, 531, 551 |
| BtgI | CCRYGG | 1 cut(s) | 368 |
| BtgZI | GCGATG | 1 cut(s) | 134 |
| BtsCI | GGATG | 3 cut(s) | 499, 784, 919 |
| BtsI | GCAGTG | 4 cut(s) | 132, 646, 828, 851 |
| BtsIMutI | CAGTG | 7 cut(s) | 6, 101, 132, 646, 828, 851, 894 |
| Cac8I | GCNNGC | 2 cut(s) | 594, 715 |
| CaiI | CAGNNNCTG | 1 cut(s) | 992 |
| Cfr13I | GGNCC | 3 cut(s) | 260, 289, 372 |
| CseI | GACGC | 2 cut(s) | 602, 998 |
| CsiI | ACCWGGT | 1 cut(s) | 676 |
| Csp6I | GTAC | 2 cut(s) | 356, 434 |
| CviAII | CATG | 7 cut(s) | 73, 257, 335, 369, 418, 470, 1068 |
| CviJI | RGCY | 9 cut(s) | 261, 303, 366, 474, 531, 551, 592, 717, 1027 |
| CviKI_1 | RGCY | 9 cut(s) | 261, 303, 366, 474, 531, 551, 592, 717, 1027 |
| CviQI | GTAC | 2 cut(s) | 356, 434 |
| DdeI | CTNAG | 1 cut(s) | 688 |
| DpnI | GATC | 6 cut(s) | 134, 216, 423, 515, 981, 1039 |
| DpnII | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| EaeI | YGGCCR | 1 cut(s) | 529 |
| Eam1104I | CTCTTC | 3 cut(s) | 147, 323, 567 |
| EarI | CTCTTC | 3 cut(s) | 147, 323, 567 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco31I | GGTCTC | 2 cut(s) | 409, 419 |
| Eco47I | GGWCC | 2 cut(s) | 289, 372 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| EcoRI | GAATTC | 1 cut(s) | 465 |
| EcoRII | CCWGG | 3 cut(s) | 174, 676, 728 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| Esp3I | CGTCTC | 2 cut(s) | 502, 808 |
| FaeI | CATG | 7 cut(s) | 76, 260, 338, 372, 421, 473, 1071 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 204, 236 |
| FaqI | GGGAC | 2 cut(s) | 764, 812 |
| FatI | CATG | 7 cut(s) | 72, 256, 334, 368, 417, 469, 1067 |
| FblI | GTMKAC | 1 cut(s) | 763 |
| Fnu4HI | GCNGC | 2 cut(s) | 573, 894 |
| FokI | GGATG | 3 cut(s) | 506, 791, 926 |
| Fsp4HI | GCNGC | 2 cut(s) | 573, 894 |
| FspBI | CTAG | 2 cut(s) | 504, 767 |
| GluI | GCNGC | 2 cut(s) | 573, 894 |
| HaeIII | GGCC | 3 cut(s) | 261, 531, 551 |
| HapII | CCGG | 3 cut(s) | 140, 166, 698 |
| HgaI | GACGC | 2 cut(s) | 602, 998 |
| Hin1I | GRCGYC | 2 cut(s) | 613, 801 |
| Hin1II | CATG | 7 cut(s) | 76, 260, 338, 372, 421, 473, 1071 |
| HincII | GTYRAC | 1 cut(s) | 960 |
| HindII | GTYRAC | 1 cut(s) | 960 |
| HinfI | GANTC | 6 cut(s) | 279, 312, 445, 545, 646, 971 |
| HpaII | CCGG | 3 cut(s) | 140, 166, 698 |
| HphI | GGTGA | 2 cut(s) | 142, 865 |
| Hpy166II | GTNNAC | 4 cut(s) | 246, 764, 960, 1007 |
| Hpy188I | TCNGA | 4 cut(s) | 182, 409, 1024, 1042 |
| Hpy188III | TCNNGA | 3 cut(s) | 276, 442, 457 |
| Hpy8I | GTNNAC | 4 cut(s) | 246, 764, 960, 1007 |
| HpyAV | CCTTC | 4 cut(s) | 100, 273, 293, 574 |
| HpyCH4III | ACNGT | 5 cut(s) | 83, 96, 660, 908, 998 |
| HpyCH4IV | ACGT | 2 cut(s) | 358, 801 |
| HpyCH4V | TGCA | 5 cut(s) | 572, 713, 821, 862, 946 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 557, 841, 974, 983 |
| HpyF3I | CTNAG | 1 cut(s) | 688 |
| HpySE526I | ACGT | 2 cut(s) | 358, 801 |
| Hsp92I | GRCGYC | 2 cut(s) | 613, 801 |
| Hsp92II | CATG | 7 cut(s) | 76, 260, 338, 372, 421, 473, 1071 |
| KpnI | GGTACC | 1 cut(s) | 437 |
| Kzo9I | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| LguI | GCTCTTC | 1 cut(s) | 567 |
| Lsp1109I | GCAGC | 1 cut(s) | 584 |
| LweI | GCATC | 2 cut(s) | 547, 808 |
| MabI | ACCWGGT | 1 cut(s) | 676 |
| MaeI | CTAG | 2 cut(s) | 504, 767 |
| MaeII | ACGT | 2 cut(s) | 358, 801 |
| MaeIII | GTNAC | 1 cut(s) | 55 |
| MalI | GATC | 6 cut(s) | 134, 216, 423, 515, 981, 1039 |
| MboI | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| MfeI | CAATTG | 1 cut(s) | 708 |
| MflI | RGATCY | 3 cut(s) | 214, 421, 1037 |
| MlsI | TGGCCA | 1 cut(s) | 531 |
| MluCI | AATT | 8 cut(s) | 146, 293, 449, 465, 708, 856, 868, 947 |
| MluNI | TGGCCA | 1 cut(s) | 531 |
| MlyI | GAGTC | 3 cut(s) | 554, 655, 965 |
| MmeI | TCCRAC | 1 cut(s) | 160 |
| Mox20I | TGGCCA | 1 cut(s) | 531 |
| MroXI | GAANNNNTTC | 1 cut(s) | 449 |
| MscI | TGGCCA | 1 cut(s) | 531 |
| MseI | TTAA | 2 cut(s) | 225, 306 |
| Msp20I | TGGCCA | 1 cut(s) | 531 |
| MspA1I | CMGCKG | 1 cut(s) | 977 |
| MspI | CCGG | 3 cut(s) | 140, 166, 698 |
| MspR9I | CCNGG | 3 cut(s) | 176, 678, 730 |
| MunI | CAATTG | 1 cut(s) | 708 |
| MvaI | CCWGG | 3 cut(s) | 176, 678, 730 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 557, 841, 974, 983 |
| NcoI | CCATGG | 1 cut(s) | 368 |
| NdeII | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| NlaIII | CATG | 7 cut(s) | 76, 260, 338, 372, 421, 473, 1071 |
| NlaIV | GGNNCC | 4 cut(s) | 423, 435, 696, 1039 |
| NmuCI | GTSAC | 1 cut(s) | 55 |
| PciSI | GCTCTTC | 1 cut(s) | 567 |
| PdmI | GAANNNNTTC | 1 cut(s) | 449 |
| PfeI | GAWTC | 3 cut(s) | 279, 312, 445 |
| PkrI | GCNGC | 2 cut(s) | 574, 895 |
| PleI | GAGTC | 3 cut(s) | 553, 654, 965 |
| PpsI | GAGTC | 3 cut(s) | 553, 654, 965 |
| Ppu21I | YACGTR | 1 cut(s) | 359 |
| Psp6I | CCWGG | 3 cut(s) | 174, 676, 728 |
| PspGI | CCWGG | 3 cut(s) | 174, 676, 728 |
| PspN4I | GGNNCC | 4 cut(s) | 423, 435, 696, 1039 |
| PspPI | GGNCC | 3 cut(s) | 260, 289, 372 |
| PstNI | CAGNNNCTG | 1 cut(s) | 992 |
| PsuI | RGATCY | 3 cut(s) | 214, 421, 1037 |
| RsaI | GTAC | 2 cut(s) | 357, 435 |
| RsaNI | GTAC | 2 cut(s) | 356, 434 |
| SapI | GCTCTTC | 1 cut(s) | 567 |
| SaqAI | TTAA | 2 cut(s) | 225, 306 |
| SatI | GCNGC | 2 cut(s) | 573, 894 |
| Sau3AI | GATC | 6 cut(s) | 132, 214, 421, 513, 979, 1037 |
| Sau96I | GGNCC | 3 cut(s) | 260, 289, 372 |
| SchI | GAGTC | 3 cut(s) | 554, 655, 965 |
| ScrFI | CCNGG | 3 cut(s) | 176, 678, 730 |
| SetI | ASST | 8 cut(s) | 210, 291, 361, 435, 481, 682, 696, 804 |
| SexAI | ACCWGGT | 1 cut(s) | 676 |
| SfaNI | GCATC | 2 cut(s) | 547, 808 |
| SinI | GGWCC | 2 cut(s) | 289, 372 |
| SmlI | CTYRAG | 1 cut(s) | 440 |
| SmoI | CTYRAG | 1 cut(s) | 440 |
| Sse9I | AATT | 8 cut(s) | 146, 293, 449, 465, 708, 856, 868, 947 |
| SsiI | CCGC | 2 cut(s) | 893, 975 |
| SspMI | CTAG | 2 cut(s) | 504, 767 |
| StyD4I | CCNGG | 3 cut(s) | 174, 676, 728 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 5 cut(s) | 83, 96, 660, 908, 998 |
| TaiI | ACGT | 2 cut(s) | 361, 804 |
| TaqI | TCGA | 2 cut(s) | 28, 516 |
| TasI | AATT | 8 cut(s) | 146, 293, 449, 465, 708, 856, 868, 947 |
| TauI | GCSGC | 1 cut(s) | 896 |
| TfiI | GAWTC | 3 cut(s) | 279, 312, 445 |
| Tru1I | TTAA | 2 cut(s) | 225, 306 |
| Tru9I | TTAA | 2 cut(s) | 225, 306 |
| TscAI | CASTG | 7 cut(s) | 13, 108, 132, 646, 828, 851, 894 |
| TseFI | GTSAC | 1 cut(s) | 55 |
| TseI | GCWGC | 1 cut(s) | 572 |
| Tsp45I | GTSAC | 1 cut(s) | 55 |
| TspDTI | ATGAA | 6 cut(s) | 31, 248, 351, 393, 458, 800 |
| TspGWI | ACGGA | 1 cut(s) | 526 |
| TspRI | CASTG | 7 cut(s) | 13, 108, 132, 646, 828, 851, 894 |
| VpaK11BI | GGWCC | 2 cut(s) | 289, 372 |
| XapI | RAATTY | 2 cut(s) | 465, 856 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 678 |
| XmiI | GTMKAC | 1 cut(s) | 763 |
| XmnI | GAANNNNTTC | 1 cut(s) | 449 |
| XspI | CTAG | 2 cut(s) | 504, 767 |
| ZraI | GACGTC | 1 cut(s) | 802 |