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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 599 |
| AccI | GTMKAC | 1 cut(s) | 119 |
| AciI | CCGC | 1 cut(s) | 557 |
| AclWI | GGATC | 2 cut(s) | 403, 569 |
| AcoI | YGGCCR | 1 cut(s) | 355 |
| AcyI | GRCGYC | 1 cut(s) | 596 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 206, 584 |
| AjnI | CCWGG | 1 cut(s) | 101 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 81, 113 |
| AluBI | AGCT | 2 cut(s) | 196, 326 |
| AluI | AGCT | 2 cut(s) | 196, 326 |
| Alw26I | GTCTC | 3 cut(s) | 148, 313, 518 |
| AlwI | GGATC | 2 cut(s) | 403, 569 |
| AoxI | GGCC | 4 cut(s) | 36, 84, 208, 355 |
| ApeKI | GCWGC | 1 cut(s) | 18 |
| AseI | ATTAAT | 1 cut(s) | 489 |
| AspLEI | GCGC | 1 cut(s) | 190 |
| AspS9I | GGNCC | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 3 cut(s) | 125, 190, 506 |
| AxyI | CCTNAGG | 1 cut(s) | 292 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| BbvI | GCAGC | 1 cut(s) | 30 |
| BccI | CCATC | 2 cut(s) | 104, 230 |
| BciT130I | CCWGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 3 cut(s) | 148, 313, 518 |
| BfaI | CTAG | 2 cut(s) | 15, 216 |
| BisI | GCNGC | 1 cut(s) | 19 |
| BlpI | GCTNAGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 1 cut(s) | 85 |
| BmrFI | CCNGG | 1 cut(s) | 103 |
| BmrI | ACTGGG | 2 cut(s) | 407, 448 |
| BmuI | ACTGGG | 2 cut(s) | 407, 448 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| BpmI | CTGGAG | 1 cut(s) | 410 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 60 |
| BsaHI | GRCGYC | 1 cut(s) | 596 |
| BsaI | GGTCTC | 1 cut(s) | 148 |
| BsaJI | CCNNGG | 1 cut(s) | 101 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 581, 611 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 206, 584 |
| Bse118I | RCCGGY | 1 cut(s) | 34 |
| Bse1I | ACTGG | 4 cut(s) | 127, 175, 413, 454 |
| Bse21I | CCTNAGG | 1 cut(s) | 292 |
| Bse3DI | GCAATG | 1 cut(s) | 546 |
| BseBI | CCWGG | 1 cut(s) | 103 |
| BseDI | CCNNGG | 1 cut(s) | 101 |
| BseGI | GGATG | 3 cut(s) | 115, 241, 310 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 206, 584 |
| BseMI | GCAATG | 1 cut(s) | 546 |
| BseMII | CTCAG | 1 cut(s) | 51 |
| BseNI | ACTGG | 4 cut(s) | 127, 175, 413, 454 |
| BseXI | GCAGC | 1 cut(s) | 30 |
| BshFI | GGCC | 4 cut(s) | 38, 86, 210, 357 |
| BsiSI | CCGG | 4 cut(s) | 35, 191, 207, 358 |
| BslFI | GGGAC | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 206, 584 |
| BsmAI | GTCTC | 3 cut(s) | 148, 313, 518 |
| BsmFI | GGGAC | 1 cut(s) | 278 |
| BsmI | GAATGC | 1 cut(s) | 541 |
| BsnI | GGCC | 4 cut(s) | 38, 86, 210, 357 |
| Bso31I | GGTCTC | 1 cut(s) | 148 |
| Bsp143I | GATC | 2 cut(s) | 408, 574 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 60 |
| BspACI | CCGC | 1 cut(s) | 557 |
| BspANI | GGCC | 4 cut(s) | 38, 86, 210, 357 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspPI | GGATC | 2 cut(s) | 403, 569 |
| BspTNI | GGTCTC | 1 cut(s) | 148 |
| BsrDI | GCAATG | 1 cut(s) | 546 |
| BsrFI | RCCGGY | 1 cut(s) | 34 |
| BsrI | ACTGG | 4 cut(s) | 127, 175, 413, 454 |
| BssAI | RCCGGY | 1 cut(s) | 34 |
| BssECI | CCNNGG | 1 cut(s) | 101 |
| BssMI | GATC | 2 cut(s) | 408, 574 |
| BssNI | GRCGYC | 1 cut(s) | 596 |
| Bst2UI | CCWGG | 1 cut(s) | 103 |
| BstACI | GRCGYC | 1 cut(s) | 596 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 449, 545 |
| BstC8I | GCNNGC | 1 cut(s) | 140 |
| BstDEI | CTNAG | 4 cut(s) | 60, 292, 327, 471 |
| BstF5I | GGATG | 3 cut(s) | 115, 241, 310 |
| BstHHI | GCGC | 1 cut(s) | 190 |
| BstKTI | GATC | 2 cut(s) | 411, 577 |
| BstMAI | GTCTC | 3 cut(s) | 148, 313, 518 |
| BstMBI | GATC | 2 cut(s) | 408, 574 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 449, 545 |
| BstNI | CCWGG | 1 cut(s) | 103 |
| BstSCI | CCNGG | 1 cut(s) | 101 |
| BstV1I | GCAGC | 1 cut(s) | 30 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BstX2I | RGATCY | 2 cut(s) | 408, 574 |
| BstYI | RGATCY | 2 cut(s) | 408, 574 |
| Bsu36I | CCTNAGG | 1 cut(s) | 292 |
| BsuRI | GGCC | 4 cut(s) | 38, 86, 210, 357 |
| BtsCI | GGATG | 3 cut(s) | 115, 241, 310 |
| BtsIMutI | CAGTG | 2 cut(s) | 420, 426 |
| Cac8I | GCNNGC | 1 cut(s) | 140 |
| CfoI | GCGC | 1 cut(s) | 190 |
| Cfr10I | RCCGGY | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 1 cut(s) | 85 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 447, 482 |
| DdeI | CTNAG | 4 cut(s) | 60, 292, 327, 471 |
| DpnI | GATC | 2 cut(s) | 410, 576 |
| DpnII | GATC | 2 cut(s) | 408, 574 |
| EaeI | YGGCCR | 1 cut(s) | 355 |
| Eco31I | GGTCTC | 1 cut(s) | 148 |
| Eco81I | CCTNAGG | 1 cut(s) | 292 |
| EcoRII | CCWGG | 1 cut(s) | 101 |
| FaiI | YATR | 1 cut(s) | 42 |
| FaqI | GGGAC | 1 cut(s) | 278 |
| FblI | GTMKAC | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 1 cut(s) | 19 |
| FokI | GGATG | 3 cut(s) | 122, 248, 317 |
| Fsp4HI | GCNGC | 1 cut(s) | 19 |
| FspBI | CTAG | 2 cut(s) | 15, 216 |
| GlaI | GCGC | 1 cut(s) | 189 |
| GluI | GCNGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 410 |
| HaeIII | GGCC | 4 cut(s) | 38, 86, 210, 357 |
| HapII | CCGG | 4 cut(s) | 35, 191, 207, 358 |
| HhaI | GCGC | 1 cut(s) | 190 |
| Hin1I | GRCGYC | 1 cut(s) | 596 |
| Hin6I | GCGC | 1 cut(s) | 188 |
| HinP1I | GCGC | 1 cut(s) | 188 |
| HincII | GTYRAC | 2 cut(s) | 565, 594 |
| HindII | GTYRAC | 2 cut(s) | 565, 594 |
| HinfI | GANTC | 3 cut(s) | 44, 116, 287 |
| HpaI | GTTAAC | 1 cut(s) | 565 |
| HpaII | CCGG | 4 cut(s) | 35, 191, 207, 358 |
| HphI | GGTGA | 3 cut(s) | 125, 190, 506 |
| Hpy166II | GTNNAC | 3 cut(s) | 120, 565, 594 |
| Hpy188I | TCNGA | 2 cut(s) | 372, 579 |
| Hpy188III | TCNNGA | 3 cut(s) | 389, 459, 572 |
| Hpy8I | GTNNAC | 3 cut(s) | 120, 565, 594 |
| Hpy99I | CGWCG | 2 cut(s) | 376, 601 |
| HpyAV | CCTTC | 1 cut(s) | 156 |
| HpyCH4IV | ACGT | 1 cut(s) | 596 |
| HpyCH4V | TGCA | 2 cut(s) | 539, 548 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 449, 545 |
| HpyF3I | CTNAG | 4 cut(s) | 60, 292, 327, 471 |
| HpySE526I | ACGT | 1 cut(s) | 596 |
| Hsp92I | GRCGYC | 1 cut(s) | 596 |
| HspAI | GCGC | 1 cut(s) | 188 |
| KspAI | GTTAAC | 1 cut(s) | 565 |
| Kzo9I | GATC | 2 cut(s) | 408, 574 |
| LmnI | GCTCC | 2 cut(s) | 193, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 30 |
| MaeI | CTAG | 2 cut(s) | 15, 216 |
| MaeII | ACGT | 1 cut(s) | 596 |
| MaeIII | GTNAC | 2 cut(s) | 494, 616 |
| MalI | GATC | 2 cut(s) | 410, 576 |
| MboI | GATC | 2 cut(s) | 408, 574 |
| MboII | GAAGA | 1 cut(s) | 22 |
| MflI | RGATCY | 2 cut(s) | 408, 574 |
| MluCI | AATT | 4 cut(s) | 23, 397, 437, 486 |
| MlyI | GAGTC | 2 cut(s) | 38, 125 |
| MmeI | TCCRAC | 2 cut(s) | 87, 395 |
| MnlI | CCTC | 7 cut(s) | 64, 128, 216, 221, 370, 455, 601 |
| MseI | TTAA | 5 cut(s) | 26, 446, 489, 519, 564 |
| MspI | CCGG | 4 cut(s) | 35, 191, 207, 358 |
| MspR9I | CCNGG | 1 cut(s) | 103 |
| Mva1269I | GAATGC | 1 cut(s) | 541 |
| MvaI | CCWGG | 1 cut(s) | 103 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 449, 545 |
| NdeII | GATC | 2 cut(s) | 408, 574 |
| NmuCI | GTSAC | 1 cut(s) | 494 |
| PctI | GAATGC | 1 cut(s) | 541 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 20 |
| PleI | GAGTC | 2 cut(s) | 38, 124 |
| PpsI | GAGTC | 2 cut(s) | 38, 124 |
| PshBI | ATTAAT | 1 cut(s) | 489 |
| Psp6I | CCWGG | 1 cut(s) | 101 |
| PspGI | CCWGG | 1 cut(s) | 101 |
| PspPI | GGNCC | 1 cut(s) | 85 |
| PsuI | RGATCY | 2 cut(s) | 408, 574 |
| SaqAI | TTAA | 5 cut(s) | 26, 446, 489, 519, 564 |
| SatI | GCNGC | 1 cut(s) | 19 |
| Sau3AI | GATC | 2 cut(s) | 408, 574 |
| Sau96I | GGNCC | 1 cut(s) | 85 |
| SchI | GAGTC | 2 cut(s) | 38, 125 |
| ScrFI | CCNGG | 1 cut(s) | 103 |
| SetI | ASST | 7 cut(s) | 107, 198, 258, 328, 348, 381, 599 |
| Sse9I | AATT | 4 cut(s) | 23, 397, 437, 486 |
| SsiI | CCGC | 1 cut(s) | 557 |
| SspMI | CTAG | 2 cut(s) | 15, 216 |
| StyD4I | CCNGG | 1 cut(s) | 101 |
| TaiI | ACGT | 1 cut(s) | 599 |
| TaqI | TCGA | 2 cut(s) | 508, 599 |
| TasI | AATT | 4 cut(s) | 23, 397, 437, 486 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 5 cut(s) | 26, 446, 489, 519, 564 |
| Tru9I | TTAA | 5 cut(s) | 26, 446, 489, 519, 564 |
| TscAI | CASTG | 2 cut(s) | 420, 433 |
| TseFI | GTSAC | 1 cut(s) | 494 |
| TseI | GCWGC | 1 cut(s) | 18 |
| Tsp45I | GTSAC | 1 cut(s) | 494 |
| TspDTI | ATGAA | 1 cut(s) | 107 |
| TspGWI | ACGGA | 1 cut(s) | 389 |
| TspRI | CASTG | 2 cut(s) | 420, 433 |
| VspI | ATTAAT | 1 cut(s) | 489 |
| XmiI | GTMKAC | 1 cut(s) | 119 |
| XspI | CTAG | 2 cut(s) | 15, 216 |
| ZraI | GACGTC | 1 cut(s) | 597 |