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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 213, 367 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 424 |
| AcuI | CTGAAG | 1 cut(s) | 419 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 319, 320, 468 |
| AgsI | TTSAA | 2 cut(s) | 91, 295 |
| Alw26I | GTCTC | 1 cut(s) | 283 |
| Ama87I | CYCGRG | 2 cut(s) | 313, 468 |
| AoxI | GGCC | 2 cut(s) | 3, 471 |
| ApaI | GGGCCC | 1 cut(s) | 475 |
| ApeKI | GCWGC | 1 cut(s) | 111 |
| ApoI | RAATTY | 1 cut(s) | 424 |
| AspS9I | GGNCC | 2 cut(s) | 471, 472 |
| AsuC2I | CCSGG | 4 cut(s) | 314, 315, 469, 470 |
| AvaI | CYCGRG | 2 cut(s) | 313, 468 |
| AxyI | CCTNAGG | 1 cut(s) | 18 |
| BaeGI | GKGCMC | 1 cut(s) | 475 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 475 |
| BbsI | GAAGAC | 1 cut(s) | 77 |
| BbvI | GCAGC | 1 cut(s) | 123 |
| BccI | CCATC | 3 cut(s) | 41, 433, 483 |
| BcnI | CCSGG | 4 cut(s) | 314, 315, 469, 470 |
| BcoDI | GTCTC | 1 cut(s) | 283 |
| BfaI | CTAG | 1 cut(s) | 429 |
| BisI | GCNGC | 2 cut(s) | 112, 368 |
| BlsI | GCNGC | 2 cut(s) | 113, 369 |
| Bme1390I | CCNGG | 4 cut(s) | 314, 315, 469, 470 |
| BmeT110I | CYCGRG | 2 cut(s) | 313, 468 |
| BmgT120I | GGNCC | 2 cut(s) | 471, 472 |
| BmiI | GGNNCC | 2 cut(s) | 459, 473 |
| BmrFI | CCNGG | 4 cut(s) | 314, 315, 469, 470 |
| BpiI | GAAGAC | 1 cut(s) | 77 |
| BpuMI | CCSGG | 4 cut(s) | 314, 315, 469, 470 |
| BsaJI | CCNNGG | 5 cut(s) | 115, 312, 313, 314, 468 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 319, 320, 468 |
| Bse1I | ACTGG | 1 cut(s) | 80 |
| Bse21I | CCTNAGG | 1 cut(s) | 18 |
| BseDI | CCNNGG | 5 cut(s) | 115, 312, 313, 314, 468 |
| BseGI | GGATG | 2 cut(s) | 52, 308 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 319, 320, 468 |
| BseMII | CTCAG | 2 cut(s) | 9, 212 |
| BseNI | ACTGG | 1 cut(s) | 80 |
| BseRI | GAGGAG | 2 cut(s) | 255, 281 |
| BseSI | GKGCMC | 1 cut(s) | 475 |
| BseXI | GCAGC | 1 cut(s) | 123 |
| BsgI | GTGCAG | 1 cut(s) | 130 |
| BshFI | GGCC | 2 cut(s) | 5, 473 |
| BsiHKCI | CYCGRG | 2 cut(s) | 313, 468 |
| BsiSI | CCGG | 2 cut(s) | 314, 469 |
| BslFI | GGGAC | 2 cut(s) | 208, 457 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 319, 320, 468 |
| BsmAI | GTCTC | 1 cut(s) | 283 |
| BsmFI | GGGAC | 2 cut(s) | 208, 457 |
| BsnI | GGCC | 2 cut(s) | 5, 473 |
| BsoBI | CYCGRG | 2 cut(s) | 313, 468 |
| Bsp120I | GGGCCC | 1 cut(s) | 471 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| BspACI | CCGC | 2 cut(s) | 213, 367 |
| BspANI | GGCC | 2 cut(s) | 5, 473 |
| BspCNI | CTCAG | 2 cut(s) | 10, 211 |
| BspLI | GGNNCC | 2 cut(s) | 459, 473 |
| BspQI | GCTCTTC | 1 cut(s) | 323 |
| BsrI | ACTGG | 1 cut(s) | 80 |
| BssECI | CCNNGG | 5 cut(s) | 115, 312, 313, 314, 468 |
| BssT1I | CCWWGG | 1 cut(s) | 115 |
| Bst4CI | ACNGT | 1 cut(s) | 421 |
| Bst6I | CTCTTC | 2 cut(s) | 149, 323 |
| BstC8I | GCNNGC | 2 cut(s) | 133, 372 |
| BstDEI | CTNAG | 5 cut(s) | 18, 105, 198, 228, 359 |
| BstF5I | GGATG | 2 cut(s) | 52, 308 |
| BstMAI | GTCTC | 1 cut(s) | 283 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstSCI | CCNGG | 4 cut(s) | 312, 313, 467, 468 |
| BstSLI | GKGCMC | 1 cut(s) | 475 |
| BstV1I | GCAGC | 1 cut(s) | 123 |
| BstV2I | GAAGAC | 1 cut(s) | 77 |
| Bsu36I | CCTNAGG | 1 cut(s) | 18 |
| BsuRI | GGCC | 2 cut(s) | 5, 473 |
| BtsCI | GGATG | 2 cut(s) | 52, 308 |
| Cac8I | GCNNGC | 2 cut(s) | 133, 372 |
| Cfr13I | GGNCC | 2 cut(s) | 471, 472 |
| Cfr9I | CCCGGG | 2 cut(s) | 313, 468 |
| CviAII | CATG | 1 cut(s) | 220 |
| CviJI | RGCY | 6 cut(s) | 5, 114, 135, 370, 467, 473 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 114, 135, 370, 467, 473 |
| DdeI | CTNAG | 5 cut(s) | 18, 105, 198, 228, 359 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 2 cut(s) | 149, 323 |
| EarI | CTCTTC | 2 cut(s) | 149, 323 |
| Eco130I | CCWWGG | 1 cut(s) | 115 |
| Eco24I | GRGCYC | 1 cut(s) | 475 |
| Eco57I | CTGAAG | 1 cut(s) | 419 |
| Eco81I | CCTNAGG | 1 cut(s) | 18 |
| Eco88I | CYCGRG | 2 cut(s) | 313, 468 |
| EcoRI | GAATTC | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 1 cut(s) | 115 |
| EcoT38I | GRGCYC | 1 cut(s) | 475 |
| ErhI | CCWWGG | 1 cut(s) | 115 |
| FaeI | CATG | 1 cut(s) | 223 |
| FaiI | YATR | 1 cut(s) | 221 |
| FaqI | GGGAC | 2 cut(s) | 208, 457 |
| FatI | CATG | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 2 cut(s) | 112, 368 |
| FokI | GGATG | 2 cut(s) | 59, 295 |
| FriOI | GRGCYC | 1 cut(s) | 475 |
| Fsp4HI | GCNGC | 2 cut(s) | 112, 368 |
| FspBI | CTAG | 1 cut(s) | 429 |
| GluI | GCNGC | 2 cut(s) | 112, 368 |
| HaeIII | GGCC | 2 cut(s) | 5, 473 |
| HapII | CCGG | 2 cut(s) | 314, 469 |
| Hin1II | CATG | 1 cut(s) | 223 |
| HinfI | GANTC | 2 cut(s) | 178, 196 |
| HpaII | CCGG | 2 cut(s) | 314, 469 |
| Hpy166II | GTNNAC | 1 cut(s) | 12 |
| Hpy188I | TCNGA | 3 cut(s) | 123, 344, 387 |
| Hpy188III | TCNNGA | 3 cut(s) | 17, 436, 479 |
| Hpy8I | GTNNAC | 1 cut(s) | 12 |
| HpyAV | CCTTC | 2 cut(s) | 250, 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 421 |
| HpyCH4V | TGCA | 2 cut(s) | 111, 219 |
| HpyF3I | CTNAG | 5 cut(s) | 18, 105, 198, 228, 359 |
| Hsp92II | CATG | 1 cut(s) | 223 |
| LguI | GCTCTTC | 1 cut(s) | 323 |
| LpnPI | CCDG | 6 cut(s) | 30, 93, 167, 185, 327, 482 |
| Lsp1109I | GCAGC | 1 cut(s) | 123 |
| MaeI | CTAG | 1 cut(s) | 429 |
| MboII | GAAGA | 7 cut(s) | 82, 166, 244, 340, 400, 412, 415 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 99, 424 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 187, 190 |
| MnlI | CCTC | 8 cut(s) | 13, 34, 179, 199, 233, 236, 259, 262 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 162 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 314, 469 |
| MspR9I | CCNGG | 4 cut(s) | 314, 315, 469, 470 |
| NciI | CCSGG | 4 cut(s) | 314, 315, 469, 470 |
| NlaIII | CATG | 1 cut(s) | 223 |
| NlaIV | GGNNCC | 2 cut(s) | 459, 473 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PciSI | GCTCTTC | 1 cut(s) | 323 |
| PkrI | GCNGC | 2 cut(s) | 113, 369 |
| PleI | GAGTC | 2 cut(s) | 186, 190 |
| PpsI | GAGTC | 2 cut(s) | 186, 190 |
| PspN4I | GGNNCC | 2 cut(s) | 459, 473 |
| PspOMI | GGGCCC | 1 cut(s) | 471 |
| PspPI | GGNCC | 2 cut(s) | 471, 472 |
| SapI | GCTCTTC | 1 cut(s) | 323 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| SatI | GCNGC | 2 cut(s) | 112, 368 |
| Sau96I | GGNCC | 2 cut(s) | 471, 472 |
| SchI | GAGTC | 2 cut(s) | 187, 190 |
| ScrFI | CCNGG | 4 cut(s) | 314, 315, 469, 470 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SetI | ASST | 5 cut(s) | 38, 45, 169, 190, 261 |
| SmaI | CCCGGG | 2 cut(s) | 315, 470 |
| SrfI | GCCCGGGC | 1 cut(s) | 470 |
| Sse9I | AATT | 2 cut(s) | 99, 424 |
| SsiI | CCGC | 2 cut(s) | 213, 367 |
| SspMI | CTAG | 1 cut(s) | 429 |
| StyD4I | CCNGG | 4 cut(s) | 312, 313, 467, 468 |
| StyI | CCWWGG | 1 cut(s) | 115 |
| TaaI | ACNGT | 1 cut(s) | 421 |
| TasI | AATT | 2 cut(s) | 99, 424 |
| TauI | GCSGC | 1 cut(s) | 370 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TseI | GCWGC | 1 cut(s) | 111 |
| TspDTI | ATGAA | 2 cut(s) | 297, 300 |
| TspMI | CCCGGG | 2 cut(s) | 313, 468 |
| XapI | RAATTY | 1 cut(s) | 424 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XmaI | CCCGGG | 2 cut(s) | 313, 468 |
| XspI | CTAG | 1 cut(s) | 429 |